Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 0.0e+00 1720.3 908 100.0
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 1.2e-103 382.1 753 35.1
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 2.2e-97 361.3 785 34.1
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.8e-96 358.2 790 34.3
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 6.3e-89 333.2 864 34.1
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 2.5e-69 268.1 709 31.7
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 1.6e-63 248.8 998 28.0
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 1.1e-56 226.1 610 29.5
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 2.4e-56 224.9 699 29.3
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 6.0e-55 220.3 708 29.2
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 1.7e-54 218.8 705 30.1
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 2.3e-54 218.4 736 28.8
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 2.1e-52 211.8 721 28.3
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 8.1e-52 209.9 741 27.8
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 1.8e-51 208.8 762 27.2
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 3.1e-51 208.0 696 27.6
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 6.8e-51 206.8 714 29.1
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 8.9e-51 206.5 733 27.6
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 1.2e-50 206.1 705 28.5
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 1.5e-50 205.7 702 28.9
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.6e-50 204.9 697 27.7
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 4.4e-50 204.1 695 27.8
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 4.4e-50 204.1 721 28.0
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 4.4e-50 204.1 701 28.1
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 5.8e-50 203.8 702 27.8
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 9.9e-50 203.0 692 27.2
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 1.7e-49 202.2 723 28.5
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 2.9e-49 201.4 714 28.7
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 2.9e-49 201.4 706 28.8
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 2.9e-49 201.4 741 27.5
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 3.8e-49 201.1 745 28.6
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 3.8e-49 201.1 704 28.0
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 4.9e-49 200.7 720 27.6
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 1.4e-48 199.1 743 27.5
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.9e-48 198.7 727 29.0
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 1.9e-48 198.7 744 27.0
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 1.9e-48 198.7 721 27.3
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 2.4e-48 198.4 720 27.1
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 2.4e-48 198.4 700 28.1
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 2.4e-48 198.4 744 27.3
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 3.2e-48 198.0 708 28.0
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 3.2e-48 198.0 713 27.8
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.1e-48 197.6 698 26.9
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 4.1e-48 197.6 708 28.1
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 4.1e-48 197.6 741 27.4
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 5.4e-48 197.2 723 26.8
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 7.1e-48 196.8 701 27.4
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 7.1e-48 196.8 706 27.8
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 7.1e-48 196.8 745 28.1
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 9.2e-48 196.4 712 28.8
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 9.2e-48 196.4 710 27.3
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 9.2e-48 196.4 732 27.3
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.6e-47 195.7 712 27.4
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 3.5e-47 194.5 692 28.5
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 3.5e-47 194.5 741 27.7
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 4.6e-47 194.1 691 27.5
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 4.6e-47 194.1 711 27.6
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 4.6e-47 194.1 759 28.2
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 4.6e-47 194.1 757 26.6
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 4.6e-47 194.1 732 27.5
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 1.3e-46 192.6 696 28.2
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 1.7e-46 192.2 721 27.3
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 1.7e-46 192.2 695 27.5
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 2.3e-46 191.8 719 28.1
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 3.0e-46 191.4 737 27.4
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 5.1e-46 190.7 738 27.2
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 6.6e-46 190.3 751 26.9
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 8.7e-46 189.9 712 27.1
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 8.7e-46 189.9 695 27.5
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 8.7e-46 189.9 725 26.6
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 1.1e-45 189.5 752 27.5
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 1.1e-45 189.5 700 26.0
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 1.5e-45 189.1 733 27.7
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 1.9e-45 188.7 440 31.1
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 1.9e-45 188.7 460 31.7
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 3.3e-45 188.0 728 27.7
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 5.6e-45 187.2 695 28.3
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 7.3e-45 186.8 722 28.0
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 8.1e-44 183.3 766 25.8
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 2.4e-43 181.8 437 31.4
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 9.0e-43 179.9 691 26.6
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.2e-42 179.5 716 28.1
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 2.0e-42 178.7 706 28.5
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 2.0e-42 178.7 770 26.5
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.4e-42 177.9 697 28.3
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 2.2e-41 175.3 442 31.0
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 8.4e-41 173.3 693 26.4
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 1.4e-40 172.6 832 26.9
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 4.2e-40 171.0 748 25.7
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 7.1e-40 170.2 695 26.3
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 7.1e-40 170.2 684 26.3
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 2.7e-39 168.3 793 26.0
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 3.5e-39 167.9 330 36.1
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 7.8e-39 166.8 738 25.9
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 1.0e-38 166.4 730 25.8
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 3.9e-38 164.5 698 25.9
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 8.7e-38 163.3 677 25.7
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 2.5e-37 161.8 363 32.0
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 1.1e-35 156.4 707 26.0
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 2.4e-35 155.2 461 29.3
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 3.1e-35 154.8 455 28.8
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 3.4e-34 151.4 736 25.0
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 4.8e-28 131.0 493 27.8
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.8e-27 129.0 716 24.6
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 2.0e-26 125.6 306 32.4
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 3.4e-26 124.8 273 35.9
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 9.9e-26 123.2 273 32.6
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 2.2e-25 122.1 273 31.5
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 1.1e-24 119.8 668 24.1
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 4.6e-23 114.4 257 28.0
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 1.0e-22 113.2 652 25.3
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 1.0e-22 113.2 640 24.8
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 2.3e-22 112.1 507 25.8
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.1e-21 109.8 332 29.5
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 3.3e-21 108.2 503 25.6
Cre07.g312150 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 3.3e-21 108.2 354 28.0
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 9.6e-21 106.7 503 25.4
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 4.8e-20 104.4 494 24.7
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 5.3e-19 100.9 237 34.6
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.3e-17 96.3 357 27.5
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 3.8e-17 94.7 315 28.9
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 3.2e-16 91.7 136 41.2
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 7.1e-16 90.5 123 39.8
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 9.3e-16 90.1 140 38.6
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.6e-15 89.4 140 38.6
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.0e-14 86.7 114 43.0
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 2.5e-13 82.0 98 42.9
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.5e-13 82.0 134 34.3
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 3.1e-11 75.1 96 42.7
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.3e-09 69.7 247 30.4
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 1.7e-09 69.3 400 24.8
SEGI_17474 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.5e-08 65.5 113 33.6
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 6.1e-07 60.8 166 30.1
Pp3s70_20 Physcomitrium patens HOM05D002705 ORTHO05D313936 6.1e-07 60.8 466 21.9
SEGI_14932 Sequoiadendron giganteum HOM05D016114 ORTHO05D017362 1.0e-06 60.1 43 65.1
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 5.1e-06 57.8 97 36.1
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 6.7e-06 57.4 166 28.9


User provided reference genes

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