Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G339 Micromonas commoda HOM05D005528 ORTHO05D007066 3.3e-217 758.1 372 100.0
MCO05G361 Micromonas commoda HOM05D001262 ORTHO05D001114 7.2e-39 165.6 226 38.1
MCO13G631 Micromonas commoda HOM05D005528 ORTHO05D007066 1.0e-32 145.2 266 35.7
Cfa027170 Carpinus fangiana HOM05D005528 ORTHO05D007066 2.9e-24 117.1 226 34.1
Cre03.g164350 Chlamydomonas reinhardtii HOM05D001262 ORTHO05D001114 1.9e-23 114.4 224 33.9
Os04g0669500 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 4.7e-22 109.8 230 33.0
PGR004G2776 Punica granatum HOM05D005528 ORTHO05D007066 3.0e-21 107.1 200 33.5
Cpa.g.sc152.65 Carica papaya HOM05D005528 ORTHO05D007066 3.9e-21 106.7 214 32.2
Eucgr.D01386 Eucalyptus grandis HOM05D005528 ORTHO05D007066 3.9e-21 106.7 228 31.6
SGA_v2.0_scaffold7G03770 Striga asiatica HOM05D005528 ORTHO05D007066 3.9e-21 106.7 235 31.1
COL.COLO4_31864 Corchorus olitorius HOM05D005528 ORTHO05D007066 5.2e-21 106.3 221 33.0
vmacro03653 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 6.7e-21 105.9 209 32.5
Duzib235G0675 Durio zibethinus HOM05D005528 ORTHO05D007066 1.5e-20 104.8 200 34.5
Cfa000120 Carpinus fangiana HOM05D005528 ORTHO05D007066 2.6e-20 104.0 200 33.0
SEGI_30686 Sequoiadendron giganteum HOM05D005528 ORTHO05D007066 2.6e-20 104.0 208 29.3
Ciclev10016375m.g Citrus clementina HOM05D005528 ORTHO05D007066 3.3e-20 103.6 208 31.7
Glyma.17G009100 Glycine max HOM05D005528 ORTHO05D007066 3.3e-20 103.6 208 32.7
Lj4g0026553 Lotus japonicus HOM05D005528 ORTHO05D007066 3.3e-20 103.6 200 33.5
Zm00001eb066860 Zea mays HOM05D005528 ORTHO05D007066 3.3e-20 103.6 248 31.9
HPP92_004758 Vanilla planifolia HOM05D005528 ORTHO05D007066 4.4e-20 103.2 208 31.7
Cc09_g00990 Coffea canephora HOM05D005528 ORTHO05D007066 5.7e-20 102.8 200 31.5
FAN21G0894 Fragaria x ananassa HOM05D005528 ORTHO05D007066 5.7e-20 102.8 200 33.0
Gohir.D05G176400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 5.7e-20 102.8 200 34.0
Gorai.009G181800 Gossypium raimondii HOM05D005528 ORTHO05D007066 5.7e-20 102.8 200 34.0
Ah.09g234310 Amaranthus hybridus HOM05D005528 ORTHO05D007066 7.4e-20 102.4 208 32.2
PRCOL_00004932 Prasinoderma coloniale HOM05D005528 ORTHO05D001114 7.4e-20 102.4 223 30.9
DCAR_030878 Daucus carota HOM05D005528 ORTHO05D007066 9.7e-20 102.1 200 33.5
AUR62021877 Chenopodium quinoa HOM05D005528 ORTHO05D007066 1.3e-19 101.7 208 31.7
FvH4_3g01110 Fragaria vesca HOM05D005528 ORTHO05D007066 1.3e-19 101.7 200 32.0
Medtr4g132890 Medicago truncatula HOM05D005528 ORTHO05D007066 1.7e-19 101.3 200 32.0
Manes.16G001400 Manihot esculenta HOM05D005528 ORTHO05D007066 2.2e-19 100.9 200 33.5
EL10Ac8g20170 Beta vulgaris HOM05D005528 ORTHO05D007066 2.8e-19 100.5 208 31.7
AUR62012779 Chenopodium quinoa HOM05D005528 ORTHO05D007066 2.8e-19 100.5 208 31.7
Gohir.A05G173400 Gossypium hirsutum HOM05D005528 ORTHO05D007066 2.8e-19 100.5 200 33.5
Psat4g003480 Pisum sativum HOM05D005528 ORTHO05D007066 2.8e-19 100.5 208 30.3
Thecc.06G231500 Theobroma cacao HOM05D005528 ORTHO05D007066 2.8e-19 100.5 200 33.0
CAN.G1186.18 Capsicum annuum HOM05D005528 ORTHO05D007066 3.7e-19 100.1 208 29.8
Ca_21050_v3 Cicer arietinum L. HOM05D005528 ORTHO05D007066 3.7e-19 100.1 200 31.5
FAN25G0965 Fragaria x ananassa HOM05D005528 ORTHO05D007066 3.7e-19 100.1 200 32.5
Nitab4.5_0000143g0380 Nicotiana tabacum HOM05D005528 ORTHO05D007066 3.7e-19 100.1 208 30.3
Aa31LG6G4400 Aethionema arabicum HOM05D005528 ORTHO05D007066 4.8e-19 99.8 200 31.5
AT4G22300 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 4.8e-19 99.8 200 31.0
Mapoly0191s0010 Marchantia polymorpha HOM05D005528 ORTHO05D007066 4.8e-19 99.8 191 31.4
Oeu003172.1 Olea europaea HOM05D005528 ORTHO05D007066 4.8e-19 99.8 208 30.8
Prupe.4G012400 Prunus persica HOM05D005528 ORTHO05D007066 4.8e-19 99.8 200 32.0
CiPaw.10G076700 Carya illinoinensis HOM05D005528 ORTHO05D007066 8.2e-19 99.0 201 32.8
ClCG01G021550 Citrullus lanatus HOM05D005528 ORTHO05D007066 8.2e-19 99.0 200 33.5
Sed0027431 Sechium edule HOM05D005528 ORTHO05D007066 8.2e-19 99.0 209 32.5
THA.LOC104812987 Tarenaya hassleriana HOM05D005528 ORTHO05D007066 8.2e-19 99.0 200 31.0
RcHm_v2.0_Chr5g0001681 Rosa chinensis HOM05D005528 ORTHO05D007066 1.1e-18 98.6 200 31.5
SalBow8G0359 Salvia bowleyana HOM05D005528 ORTHO05D007066 1.1e-18 98.6 223 29.1
TPR.G36996 Trifolium pratense HOM05D005528 ORTHO05D007066 1.1e-18 98.6 200 32.0
CSS0037266 Camellia sinensis var. sinensis HOM05D005528 ORTHO05D007066 1.4e-18 98.2 200 32.5
MSTRG.7174 Avicennia marina HOM05D005528 ORTHO05D007066 1.8e-18 97.8 208 30.3
Carub.0007s1900 Capsella rubella HOM05D005528 ORTHO05D007066 1.8e-18 97.8 201 31.8
Migut.M01382 Erythranthe guttata HOM05D005528 ORTHO05D007066 1.8e-18 97.8 204 31.4
ATR1128G032 Amborella trichopoda HOM05D005528 ORTHO05D007066 2.4e-18 97.4 203 31.0
AL7G31310 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 2.4e-18 97.4 201 32.8
AT4G22305 Arabidopsis thaliana HOM05D005528 ORTHO05D007066 2.4e-18 97.4 201 31.8
C07p51770 Brassica napus HOM05D005528 ORTHO05D007066 2.4e-18 97.4 194 32.0
CARHR229210 Cardamine hirsuta HOM05D005528 ORTHO05D007066 2.4e-18 97.4 201 31.3
CsaV3_6G048570 Cucumis sativus L. HOM05D005528 ORTHO05D007066 2.4e-18 97.4 200 33.5
HanXRQChr01g0006681 Helianthus annuus HOM05D005528 ORTHO05D007066 2.4e-18 97.4 196 33.2
Carub.0007s1901 Capsella rubella HOM05D005528 ORTHO05D007066 3.1e-18 97.1 200 30.0
CARHR229200 Cardamine hirsuta HOM05D005528 ORTHO05D007066 3.1e-18 97.1 208 29.3
Nn1g07332 Nelumbo nucifera HOM05D005528 ORTHO05D007066 3.1e-18 97.1 200 31.0
VMungo1215G2369 Vigna mungo HOM05D005528 ORTHO05D007066 3.1e-18 97.1 200 32.0
Thhalv10025978m.g Eutrema salsugineum HOM05D005528 ORTHO05D007066 4.1e-18 96.7 200 30.5
Sp7g20420 Schrenkiella parvula HOM05D005528 ORTHO05D007066 4.1e-18 96.7 200 30.5
MD05G1356600 Malus domestica HOM05D005528 ORTHO05D007066 5.3e-18 96.3 200 32.0
TWI38G1545 Tripterygium wilfordii HOM05D005528 ORTHO05D007066 5.3e-18 96.3 194 31.4
GSVIVG01007237001 Vitis vinifera HOM05D005528 ORTHO05D007066 5.3e-18 96.3 227 30.8
Zm00001eb066850 Zea mays HOM05D005528 ORTHO05D007066 5.3e-18 96.3 207 32.9
BcaNung02504 Brassica carinata HOM05D005528 ORTHO05D007066 7.0e-18 95.9 194 32.0
CDE04G2569 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 7.0e-18 95.9 199 31.2
Lalb_Chr15g0087911 Lupinus albus HOM05D005528 ORTHO05D007066 7.0e-18 95.9 201 31.8
Potri.011G023000 Populus trichocarpa HOM05D005528 ORTHO05D007066 7.0e-18 95.9 194 31.4
PGSC0003DMG400013339 Solanum tuberosum HOM05D005528 ORTHO05D007066 7.0e-18 95.9 200 31.5
AL7G31320 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 9.1e-18 95.5 200 30.5
arahy.Tifrunner.gnm1.ann1.T9A2AP Arachis hypogaea HOM05D005528 ORTHO05D007066 9.1e-18 95.5 210 30.5
BraA03t14410Z Brassica rapa HOM05D005528 ORTHO05D007066 9.1e-18 95.5 200 31.0
CANSAT56G1404 Cannabis sativa HOM05D005528 ORTHO05D007066 9.1e-18 95.5 200 31.5
Lj1A1238T62 Lonicera japonica HOM05D005528 ORTHO05D007066 9.1e-18 95.5 200 32.0
arahy.Tifrunner.gnm1.ann1.GWT3TM Arachis hypogaea HOM05D005528 ORTHO05D007066 1.2e-17 95.1 210 31.0
QL03p008514 Quercus lobata HOM05D005528 ORTHO05D007066 1.2e-17 95.1 200 31.0
Sopen11g006860 Solanum pennellii HOM05D005528 ORTHO05D007066 1.2e-17 95.1 217 30.0
PRCOL_00003009 Prasinoderma coloniale HOM05D005528 ORTHO05D007066 1.6e-17 94.7 209 32.1
Solyc11g012070.3 Solanum lycopersicum HOM05D005528 ORTHO05D007066 1.6e-17 94.7 200 31.0
Dinv13958 Davidia involucrata HOM05D005528 ORTHO05D007066 2.0e-17 94.4 200 31.5
Hund21156 Selenicereus undatus HOM05D005528 ORTHO05D007066 2.0e-17 94.4 231 29.0
TAR624G1052 Trochodendron aralioides HOM05D005528 ORTHO05D007066 2.0e-17 94.4 200 30.5
PSO541G4654 Papaver somniferum HOM05D005528 ORTHO05D007066 2.6e-17 94.0 233 28.8
Aqoxy1G04149 Aquilegia oxysepala HOM05D005528 ORTHO05D007066 3.5e-17 93.6 212 30.2
unitig_37.g12163 Utricularia gibba HOM05D005528 ORTHO05D007066 3.5e-17 93.6 210 31.0
Actinidia26871 Actinidia chinensis HOM05D005528 ORTHO05D007066 4.5e-17 93.2 217 30.4
BcaNung02505 Brassica carinata HOM05D005528 ORTHO05D007066 4.5e-17 93.2 200 31.0
A03p53440 Brassica napus HOM05D005528 ORTHO05D007066 4.5e-17 93.2 200 30.5
Lsat_1_v5_gn_0_40241 Lactuca sativa HOM05D005528 ORTHO05D007066 4.5e-17 93.2 201 30.8
BcaNung01697 Brassica carinata HOM05D005528 ORTHO05D007066 5.9e-17 92.8 210 29.0
QL10p003542 Quercus lobata HOM05D005528 ORTHO05D007066 5.9e-17 92.8 213 29.1
Atru.chr1.2485 Acer truncatum HOM05D000003 ORTHO05D000004 7.7e-17 92.4 189 31.2
PSO675G5657 Papaver somniferum HOM05D005528 ORTHO05D007066 7.7e-17 92.4 233 28.8
Sabra11G0014000 Salix brachista HOM05D005528 ORTHO05D007066 1.0e-16 92.0 208 29.8
BolC7t45679H Brassica oleracea HOM05D005528 ORTHO05D007066 1.3e-16 91.7 212 29.7
ECA248G2494 Erigeron canadensis HOM05D005528 ORTHO05D007066 2.9e-16 90.5 201 30.3
Sc17g0007680 Simmondsia chinensis HOM05D005528 ORTHO05D007066 2.9e-16 90.5 234 29.9
HanXRQChr01g0006671 Helianthus annuus HOM05D005528 ORTHO05D007066 3.2e-15 87.0 201 30.3
Nitab4.5_0001198g0200 Nicotiana tabacum HOM05D005528 ORTHO05D007066 5.5e-15 86.3 154 30.5
QL10p003559 Quercus lobata HOM05D005528 ORTHO05D007066 5.5e-15 86.3 146 32.9
CANSAT56G4535 Cannabis sativa HOM05D005528 ORTHO05D007066 1.6e-14 84.7 200 29.5
SMO160G0013 Selaginella moellendorffii HOM05D018706 ORTHO05D017802 3.6e-14 83.6 180 30.0
Gohir.D06G055900 Gossypium hirsutum HOM05D001262 ORTHO05D001114 4.7e-14 83.2 261 26.4
Pp3c15_7880 Physcomitrium patens HOM05D005528 ORTHO05D007066 6.1e-14 82.8 165 32.7
Os04g0669600 Oryza sativa ssp. japonica HOM05D005528 ORTHO05D007066 1.4e-13 81.6 198 29.3
CDE07G1265 Ceratophyllum demersum HOM05D005528 ORTHO05D007066 2.3e-13 80.9 154 28.6
SMO202G0087 Selaginella moellendorffii HOM05D018706 ORTHO05D017802 2.3e-13 80.9 251 26.7
SMO223G0010 Selaginella moellendorffii HOM05D018706 ORTHO05D017802 2.3e-13 80.9 179 29.6
CBR_g44615 Chara braunii HOM05D001262 ORTHO05D001114 3.0e-13 80.5 264 26.5
Peaxi162Scf00558g00217 Petunia axillaris HOM05D005528 ORTHO05D007066 2.6e-12 77.4 174 29.3
GSVIVG01002096001 Vitis vinifera HOM05D005528 ORTHO05D007066 2.6e-12 77.4 132 30.3
Prupe.3G078700 Prunus persica HOM05D001262 ORTHO05D001114 7.5e-12 75.9 236 26.7
SMO358G0188 Selaginella moellendorffii HOM05D018706 ORTHO05D017802 9.7e-12 75.5 247 25.1
GSVIVG01017241001 Vitis vinifera HOM05D001262 ORTHO05D001114 9.7e-12 75.5 231 27.7
AagrBONN_evm.TU.Sc2ySwM_228.1448 Anthoceros agrestis HOM05D001262 ORTHO05D001114 1.3e-11 75.1 228 29.4
Phvul.003G083000 Phaseolus vulgaris HOM05D005528 ORTHO05D007066 1.3e-11 75.1 144 31.9
SMO269G0041 Selaginella moellendorffii HOM05D018706 ORTHO05D017802 3.7e-11 73.6 238 26.1
SMO347G0182 Selaginella moellendorffii HOM05D001262 ORTHO05D001114 1.1e-10 72.0 220 25.5
vmacro03840 Vaccinium macrocarpon HOM05D005528 ORTHO05D007066 3.1e-10 70.5 167 28.7
Zm00001eb345070 Zea mays HOM05D001262 ORTHO05D001114 3.1e-10 70.5 262 25.6
Eucgr.J03039 Eucalyptus grandis HOM05D001262 ORTHO05D001114 2.0e-09 67.8 226 25.7
Lalb_Chr15g0087931 Lupinus albus HOM05D005528 ORTHO05D007066 3.5e-09 67.0 135 31.1
MSTRG.11774 Avicennia marina HOM05D001262 ORTHO05D001114 5.9e-09 66.2 220 24.1
HanXRQChr01g0006701 Helianthus annuus HOM05D005528 ORTHO05D007066 1.3e-08 65.1 133 34.6
SMO146G0044 Selaginella moellendorffii HOM05D018706 ORTHO05D017802 1.7e-08 64.7 133 30.1
AL8G44690 Arabidopsis lyrata HOM05D005528 ORTHO05D007066 5.0e-08 63.2 96 33.3
Potri.004G001701 Populus trichocarpa HOM05D005528 ORTHO05D007066 1.2e-06 58.5 139 30.2
Lj5g0008711 Lotus japonicus HOM05D005528 ORTHO05D007066 2.7e-06 57.4 129 30.2
Cfa025413 Carpinus fangiana HOM05D001262 ORTHO05D017802 3.6e-06 57.0 146 26.7
Zm00001eb433300 Zea mays HOM05D005528 ORTHO05D007066 3.6e-06 57.0 96 30.2


User provided reference genes

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