Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO05G093 Micromonas commoda HOM05D005540 ORTHO05D006932 6.4e-174 614.0 312 100.0
Gohir.A11G161800 Gossypium hirsutum HOM05D005540 ORTHO05D006932 2.0e-90 336.7 300 58.0
Gohir.D11G168100 Gossypium hirsutum HOM05D005540 ORTHO05D006932 3.4e-90 335.9 300 58.3
Gorai.007G179400 Gossypium raimondii HOM05D005540 ORTHO05D006932 3.4e-90 335.9 300 58.3
COL.COLO4_15705 Corchorus olitorius HOM05D005540 ORTHO05D006932 1.7e-89 333.6 300 58.0
Solyc02g091340.4 Solanum lycopersicum HOM05D005540 ORTHO05D006932 2.2e-89 333.2 305 57.0
Sopen02g035960 Solanum pennellii HOM05D005540 ORTHO05D006932 2.2e-89 333.2 305 57.0
Zm00001eb135500 Zea mays HOM05D005540 ORTHO05D006932 3.1e-88 329.3 300 57.7
Pp3c7_20600 Physcomitrium patens HOM05D005540 ORTHO05D006932 5.4e-88 328.6 298 58.1
Migut.H00866 Erythranthe guttata HOM05D005540 ORTHO05D006932 7.0e-88 328.2 312 56.1
Eucgr.F02818 Eucalyptus grandis HOM05D005540 ORTHO05D006932 7.0e-88 328.2 308 56.5
Medtr5g079730 Medicago truncatula HOM05D005540 ORTHO05D006932 7.0e-88 328.2 300 58.0
Duzib138G0816 Durio zibethinus HOM05D005540 ORTHO05D006932 9.1e-88 327.8 300 56.7
Os12g0600400 Oryza sativa ssp. japonica HOM05D005540 ORTHO05D006932 1.2e-87 327.4 300 57.7
CiPaw.03G067900 Carya illinoinensis HOM05D005540 ORTHO05D006932 2.7e-87 326.2 299 55.9
Ciclev10012086m.g Citrus clementina HOM05D005540 ORTHO05D006932 2.7e-87 326.2 299 56.5
CSS0010845 Camellia sinensis var. sinensis HOM05D005540 ORTHO05D006932 3.5e-87 325.9 299 56.2
TWI77G0639 Tripterygium wilfordii HOM05D005540 ORTHO05D006932 3.5e-87 325.9 299 56.5
Pp3c11_8570 Physcomitrium patens HOM05D005540 ORTHO05D006932 5.9e-87 325.1 297 57.9
TPR.G3482 Trifolium pratense HOM05D005540 ORTHO05D006932 5.9e-87 325.1 299 58.2
C04p44790 Brassica napus HOM05D005540 ORTHO05D006932 7.7e-87 324.7 299 56.2
Potri.017G129000 Populus trichocarpa HOM05D005540 ORTHO05D006932 7.7e-87 324.7 299 57.2
THA.LOC104822414 Tarenaya hassleriana HOM05D005540 ORTHO05D006932 7.7e-87 324.7 299 57.5
Carub.0007s3304 Capsella rubella HOM05D005540 ORTHO05D006932 1.0e-86 324.3 299 56.9
GSVIVG01030869001 Vitis vinifera HOM05D005540 ORTHO05D006932 1.0e-86 324.3 299 56.5
BcaC02g09619 Brassica carinata HOM05D005540 ORTHO05D006932 1.3e-86 323.9 299 56.2
PGR004G0611 Punica granatum HOM05D005540 ORTHO05D006932 1.3e-86 323.9 298 56.0
Sp7g04170 Schrenkiella parvula HOM05D005540 ORTHO05D006932 1.3e-86 323.9 299 57.2
TAR629G0151 Trochodendron aralioides HOM05D005540 ORTHO05D006932 1.3e-86 323.9 299 56.9
Actinidia39198 Actinidia chinensis HOM05D005540 ORTHO05D006932 1.7e-86 323.6 298 56.4
Psat2g040920 Pisum sativum HOM05D005540 ORTHO05D006932 1.7e-86 323.6 299 57.5
Thecc.04G122100 Theobroma cacao HOM05D005540 ORTHO05D006932 1.7e-86 323.6 300 56.0
BraA04t16769Z Brassica rapa HOM05D005540 ORTHO05D006932 2.2e-86 323.2 299 55.9
BcaB06g27151 Brassica carinata HOM05D005540 ORTHO05D006932 2.9e-86 322.8 299 55.9
Thhalv10027854m.g Eutrema salsugineum HOM05D005540 ORTHO05D006932 3.8e-86 322.4 299 56.9
SEGI_01535 Sequoiadendron giganteum HOM05D005540 ORTHO05D006932 3.8e-86 322.4 303 55.4
Atru.chr4.1672 Acer truncatum HOM05D005540 ORTHO05D006932 6.5e-86 321.6 299 56.9
Dinv14871 Davidia involucrata HOM05D005540 ORTHO05D006932 6.5e-86 321.6 299 55.9
Cfa007847 Carpinus fangiana HOM05D005540 ORTHO05D006932 1.1e-85 320.9 300 55.0
Glyma.11G218700 Glycine max HOM05D005540 ORTHO05D006932 1.9e-85 320.1 300 56.7
BolC4t26053H Brassica oleracea HOM05D005540 ORTHO05D006932 2.5e-85 319.7 299 55.5
AT5G37850 Arabidopsis thaliana HOM05D005540 ORTHO05D006932 3.2e-85 319.3 299 55.9
CANSAT78G2033 Cannabis sativa HOM05D005540 ORTHO05D006932 3.2e-85 319.3 299 56.2
CARHR214890 Cardamine hirsuta HOM05D005540 ORTHO05D006932 3.2e-85 319.3 299 55.2
Ca_05867_v3 Cicer arietinum L. HOM05D005540 ORTHO05D006932 3.2e-85 319.3 299 56.9
ECA232G3523 Erigeron canadensis HOM05D005540 ORTHO05D006932 3.2e-85 319.3 299 56.2
MSTRG.23613 Avicennia marina HOM05D005540 ORTHO05D006932 4.2e-85 318.9 306 55.6
LjContig00141g0003223 Lotus japonicus HOM05D005540 ORTHO05D006932 4.2e-85 318.9 299 56.5
Lalb_Chr18g0053271 Lupinus albus HOM05D005540 ORTHO05D006932 4.2e-85 318.9 299 56.5
Sed0014193 Sechium edule HOM05D005540 ORTHO05D006932 4.2e-85 318.9 301 56.1
A04p11070 Brassica napus HOM05D005540 ORTHO05D006932 5.5e-85 318.5 300 55.7
Aa31LG9G17310 Aethionema arabicum HOM05D005540 ORTHO05D006932 7.2e-85 318.2 299 55.9
CsaV3_3G021680 Cucumis sativus L. HOM05D005540 ORTHO05D006932 7.2e-85 318.2 299 55.9
Glyma.18G038600 Glycine max HOM05D005540 ORTHO05D006932 9.5e-85 317.8 300 56.3
VMungo1383G3344 Vigna mungo HOM05D005540 ORTHO05D006932 1.6e-84 317.0 299 55.9
CAN.G625.83 Capsicum annuum HOM05D005540 ORTHO05D006932 2.1e-84 316.6 302 55.3
PSO017G2970 Papaver somniferum HOM05D005540 ORTHO05D006932 2.1e-84 316.6 300 57.0
Mapoly0043s0025 Marchantia polymorpha HOM05D005540 ORTHO05D006932 3.6e-84 315.8 297 55.2
ATR0686G023 Amborella trichopoda HOM05D005540 ORTHO05D006932 4.7e-84 315.5 303 56.1
Aqoxy3G00138 Aquilegia oxysepala HOM05D005540 ORTHO05D006932 4.7e-84 315.5 300 55.7
Nitab4.5_0004399g0070 Nicotiana tabacum HOM05D005540 ORTHO05D006932 8.0e-84 314.7 327 53.2
Sed0009967 Sechium edule HOM05D005540 ORTHO05D006932 1.0e-83 314.3 300 56.7
Manes.07G054300 Manihot esculenta HOM05D005540 ORTHO05D006932 1.4e-83 313.9 299 54.8
Phvul.001G232200 Phaseolus vulgaris HOM05D005540 ORTHO05D006932 1.4e-83 313.9 300 55.7
vmacro18057 Vaccinium macrocarpon HOM05D005540 ORTHO05D006932 1.8e-83 313.5 310 53.9
AL7G46750 Arabidopsis lyrata HOM05D005540 ORTHO05D006932 3.0e-83 312.8 299 55.2
ClCG05G010900 Citrullus lanatus HOM05D005540 ORTHO05D006932 8.8e-83 311.2 309 54.0
RcHm_v2.0_Chr2g0122561 Rosa chinensis HOM05D005540 ORTHO05D006932 3.4e-82 309.3 308 54.2
PSO478G5258 Papaver somniferum HOM05D005540 ORTHO05D006932 2.2e-81 306.6 259 61.4
Cc07_g08210 Coffea canephora HOM05D005540 ORTHO05D006932 4.9e-81 305.4 307 53.4
Prupe.3G158100 Prunus persica HOM05D005540 ORTHO05D006932 1.4e-80 303.9 299 54.2
AagrBONN_evm.TU.Sc2ySwM_344.3276 Anthoceros agrestis HOM05D005540 ORTHO05D006932 1.0e-78 297.7 255 60.4
SMO117G0213 Selaginella moellendorffii HOM05D005540 ORTHO05D006932 1.0e-78 297.7 299 54.5
Dinv19006 Davidia involucrata HOM05D005540 ORTHO05D006932 6.6e-78 295.0 262 58.0
arahy.Tifrunner.gnm1.ann1.A8AWVV Arachis hypogaea HOM05D005540 ORTHO05D006932 1.5e-77 293.9 300 53.7
arahy.Tifrunner.gnm1.ann1.IJ36EI Arachis hypogaea HOM05D005540 ORTHO05D006932 1.5e-77 293.9 299 53.8
EL10Ac2g04488 Beta vulgaris HOM05D005540 ORTHO05D006932 1.5e-77 293.9 299 53.2
HPP92_024102 Vanilla planifolia HOM05D005540 ORTHO05D006932 7.3e-77 291.6 346 48.8
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 9.5e-77 291.2 311 51.8
Lj4A178T43 Lonicera japonica HOM05D005540 ORTHO05D006932 1.6e-76 290.4 330 50.3
FAN28G0493 Fragaria x ananassa HOM05D005540 ORTHO05D006932 4.7e-76 288.9 353 49.0
arahy.Tifrunner.gnm1.ann1.32A9M8 Arachis hypogaea HOM05D005540 ORTHO05D006932 6.1e-76 288.5 286 54.5
Lsat_1_v5_gn_0_4201 Lactuca sativa HOM05D005540 ORTHO05D006932 5.2e-75 285.4 261 57.5
Lsat_1_v5_gn_4_154720 Lactuca sativa HOM05D005540 ORTHO05D006932 1.2e-74 284.3 334 48.2
Duzib133G1255 Durio zibethinus HOM05D005540 ORTHO05D006932 7.5e-74 281.6 304 51.0
Cre03.g173800 Chlamydomonas reinhardtii HOM05D005540 ORTHO05D006932 2.9e-73 279.6 304 54.9
CDE06G0494 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 6.4e-73 278.5 261 55.9
Sed0021451 Sechium edule HOM05D005540 ORTHO05D006932 1.4e-72 277.3 269 54.3
Nitab4.5_0002248g0040 Nicotiana tabacum HOM05D005540 ORTHO05D006932 1.8e-72 276.9 326 49.4
Sc14g0004860 Simmondsia chinensis HOM05D005540 ORTHO05D006932 7.0e-72 275.0 226 61.5
Sabra17G0107500 Salix brachista HOM05D005540 ORTHO05D006932 1.2e-71 274.2 321 49.5
CDE04G3097 Ceratophyllum demersum HOM05D005540 ORTHO05D006932 2.3e-70 270.0 307 49.5
FvH4_1g24900 Fragaria vesca HOM05D005540 ORTHO05D006932 1.9e-69 266.9 226 60.6
Atru.BG.179.p Acer truncatum HOM05D005540 ORTHO05D006932 1.6e-68 263.8 303 50.5
Peaxi162Scf00803g00528 Petunia axillaris HOM05D005540 ORTHO05D006932 1.7e-65 253.8 313 47.0
FAN23G2620 Fragaria x ananassa HOM05D005540 ORTHO05D006932 2.9e-65 253.1 306 48.7
QL11p004195 Quercus lobata HOM05D005540 ORTHO05D006932 1.1e-64 251.1 416 38.2
MD12G1075700 Malus domestica HOM05D005540 ORTHO05D006932 3.2e-64 249.6 305 47.5
SGA_v2.0_scaffold49G18144 Striga asiatica HOM05D005540 ORTHO05D006932 1.6e-63 247.3 257 51.8
Rhsim08G0085100 Rhododendron simsii HOM05D005540 ORTHO05D006932 2.0e-63 246.9 274 50.4
HPP92_024131 Vanilla planifolia HOM05D005540 ORTHO05D006932 6.6e-62 241.9 187 65.2
Sed0017329 Sechium edule HOM05D005540 ORTHO05D006932 1.9e-61 240.4 229 54.1
Ah.10g037980 Amaranthus hybridus HOM05D005540 ORTHO05D006932 6.2e-60 235.3 299 45.8
Hma1.2p1_0283F.1_g113550 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 3.2e-56 223.0 298 43.3
SalBow3G0445 Salvia bowleyana HOM05D005540 ORTHO05D006932 1.2e-55 221.1 262 48.1
CBR_g12736 Chara braunii HOM05D005540 ORTHO05D006932 4.6e-55 219.2 181 60.8
MBI16_g05922_MAGBIO Magnolia biondii HOM05D005540 ORTHO05D006932 5.2e-51 205.7 245 46.9
AUR62023244 Chenopodium quinoa HOM05D005540 ORTHO05D006932 4.9e-49 199.1 268 43.3
DCAR_025877 Daucus carota HOM05D005540 ORTHO05D006932 1.4e-48 197.6 219 47.9
Nn4g24119 Nelumbo nucifera HOM05D005540 ORTHO05D006932 1.1e-45 188.0 299 40.1
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 6.2e-44 182.2 275 39.3
Cpa.g.sc116.26 Carica papaya HOM05D005540 ORTHO05D006932 7.6e-42 175.3 120 70.0
Oeu030810.1 Olea europaea HOM05D005540 ORTHO05D006932 4.9e-41 172.6 150 59.3
Hund16203 Selenicereus undatus HOM05D005540 ORTHO05D006932 6.4e-41 172.2 184 48.4
Haze_14219 Corylus avellana HOM05D005540 ORTHO05D006932 3.5e-39 166.4 183 51.4
Nn3g18203 Nelumbo nucifera HOM05D005540 ORTHO05D006932 7.6e-34 148.7 110 67.3
SGA_v2.0_scaffold6G03270 Striga asiatica HOM05D005540 ORTHO05D006932 1.7e-33 147.5 186 44.1
SHI09520 Sapria himalayana HOM05D005540 ORTHO05D006932 3.8e-33 146.4 112 63.4
Haze_26639 Corylus avellana HOM05D005540 ORTHO05D006932 5.1e-30 136.0 307 30.9
Migut.H00263 Erythranthe guttata HOM05D005540 ORTHO05D006932 2.5e-29 133.7 162 48.8
Cfa022314 Carpinus fangiana HOM05D005540 ORTHO05D006932 9.9e-26 121.7 329 29.8
Cpa.g.sc116.24 Carica papaya HOM05D005540 ORTHO05D006932 1.8e-19 100.9 142 42.3
FAN26G0473 Fragaria x ananassa HOM05D005540 ORTHO05D006932 5.8e-18 95.9 256 31.6
Atru.chr4.2426 Acer truncatum HOM05D005540 ORTHO05D006932 1.7e-17 94.4 68 69.1
Hund16202 Selenicereus undatus HOM05D005540 ORTHO05D006932 2.2e-17 94.0 232 31.0
SalBow3G4194 Salvia bowleyana HOM05D005540 ORTHO05D006932 8.7e-14 82.0 47 83.0
AUR62023196 Chenopodium quinoa HOM05D005540 ORTHO05D006932 1.9e-13 80.9 47 80.9
FAN26G3341 Fragaria x ananassa HOM05D005540 ORTHO05D006932 1.9e-13 80.9 47 80.9
Nn3g18202 Nelumbo nucifera HOM05D005540 ORTHO05D006932 3.3e-13 80.1 88 46.6
Hma1.2p1_0179F.1_g079120 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 6.3e-12 75.9 46 76.1
MELO3C031731.2 Cucumis melo HOM05D005540 ORTHO05D006932 1.1e-11 75.1 64 60.9
MELO3C020384.2 Cucumis melo HOM05D005540 ORTHO05D006932 1.5e-10 71.2 71 53.5
arahy.Tifrunner.gnm1.ann1.XYVL4V Arachis hypogaea HOM05D005540 ORTHO05D023714 2.5e-08 63.9 43 67.4
SHI09525 Sapria himalayana HOM05D005540 ORTHO05D006932 9.3e-08 62.0 39 74.4
Hma1.2p1_0179F.1_g079130 Hydrangea macrophylla HOM05D005540 ORTHO05D006932 2.7e-07 60.5 48 64.6
Gohir.A13G035900 Gossypium hirsutum HOM05D005536 ORTHO05D006999 2.3e-06 57.4 113 34.5
Duzib132G1177 Durio zibethinus HOM05D005536 ORTHO05D006999 5.1e-06 56.2 113 29.2


User provided reference genes

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