Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G388 Micromonas commoda HOM05D004826 ORTHO05D006367 0.0e+00 1503.8 759 100.0
SMO358G0471 Selaginella moellendorffii HOM05D004826 ORTHO05D006367 1.1e-25 122.9 388 29.4
Mapoly0048s0007 Marchantia polymorpha HOM05D004826 ORTHO05D006367 1.2e-24 119.4 485 26.4
CBR_g19915 Chara braunii HOM05D004826 ORTHO05D006367 1.6e-24 119.0 294 30.6
TPR.G24327 Trifolium pratense HOM05D004826 ORTHO05D006367 1.6e-24 119.0 488 25.2
TAR633G1509 Trochodendron aralioides HOM05D004826 ORTHO05D006367 2.0e-24 118.6 383 28.5
Ca_08614_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 2.7e-24 118.2 405 26.7
Medtr7g095190 Medicago truncatula HOM05D004826 ORTHO05D006367 2.7e-24 118.2 386 26.9
Pp3c3_10370 Physcomitrium patens HOM05D004826 ORTHO05D006367 3.5e-24 117.9 303 29.0
CSS0031998 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 6.0e-24 117.1 350 29.7
arahy.Tifrunner.gnm1.ann1.ZSCD81 Arachis hypogaea HOM05D004826 ORTHO05D006367 1.0e-23 116.3 497 27.0
arahy.Tifrunner.gnm1.ann1.HM2HLZ Arachis hypogaea HOM05D004826 ORTHO05D006367 1.3e-23 115.9 489 27.6
Ca_08622_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 1.7e-23 115.5 286 28.7
PSO210G5512 Papaver somniferum HOM05D004826 ORTHO05D006367 1.7e-23 115.5 485 27.0
Glyma.03G155900 Glycine max HOM05D004826 ORTHO05D006367 3.9e-23 114.4 405 28.4
vmacro14910 Vaccinium macrocarpon HOM05D004826 ORTHO05D006367 3.9e-23 114.4 363 27.8
CSS0030159 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 5.0e-23 114.0 350 29.1
Lj1g0007005 Lotus japonicus HOM05D004826 ORTHO05D006367 5.0e-23 114.0 420 28.1
Glyma.19G158200 Glycine max HOM05D004826 ORTHO05D006367 1.1e-22 112.8 405 27.2
PSO832G3843 Papaver somniferum HOM05D004826 ORTHO05D006367 1.5e-22 112.5 483 26.7
Actinidia24908 Actinidia chinensis HOM05D004826 ORTHO05D006367 2.5e-22 111.7 349 28.4
DCAR_002720 Daucus carota HOM05D004826 ORTHO05D006367 4.3e-22 110.9 360 26.9
ECA236G2315 Erigeron canadensis HOM05D004826 ORTHO05D006367 5.6e-22 110.5 340 27.4
Migut.D00320 Erythranthe guttata HOM05D004826 ORTHO05D006367 5.6e-22 110.5 342 28.7
Os03g0746800 Oryza sativa ssp. japonica HOM05D004826 ORTHO05D006367 5.6e-22 110.5 314 29.3
Lsat_1_v5_gn_8_56761 Lactuca sativa HOM05D004826 ORTHO05D006367 7.3e-22 110.2 340 28.8
Psat3g063080 Pisum sativum HOM05D004826 ORTHO05D006367 7.3e-22 110.2 420 26.7
Peaxi162Scf00572g00217 Petunia axillaris HOM05D004826 ORTHO05D006367 1.6e-21 109.0 305 27.5
RcHm_v2.0_Chr6g0290561 Rosa chinensis HOM05D004826 ORTHO05D006367 1.6e-21 109.0 400 27.8
PGSC0003DMG400005331 Solanum tuberosum HOM05D004826 ORTHO05D006367 1.6e-21 109.0 397 25.7
VMungo1383G1287 Vigna mungo HOM05D004826 ORTHO05D006367 4.7e-21 107.5 478 26.8
Nn1g02359 Nelumbo nucifera HOM05D004826 ORTHO05D006367 1.1e-20 106.3 354 28.2
SEGI_35891 Sequoiadendron giganteum HOM05D004826 ORTHO05D006367 1.1e-20 106.3 380 26.1
A08p37480 Brassica napus HOM05D004826 ORTHO05D006367 1.4e-20 105.9 421 25.9
Sc17g0001330 Simmondsia chinensis HOM05D004826 ORTHO05D006367 1.4e-20 105.9 395 24.8
Aqoxy5G00445 Aquilegia oxysepala HOM05D004826 ORTHO05D006367 2.3e-20 105.1 427 27.6
C08p00410 Brassica napus HOM05D004826 ORTHO05D006367 2.3e-20 105.1 422 26.1
Dinv34775 Davidia involucrata HOM05D004826 ORTHO05D006367 3.1e-20 104.8 350 28.9
Lj1A48T56 Lonicera japonica HOM05D004826 ORTHO05D006367 3.1e-20 104.8 332 26.8
Sopen06g003480 Solanum pennellii HOM05D004826 ORTHO05D006367 3.1e-20 104.8 409 25.4
Solyc06g008700.3 Solanum lycopersicum HOM05D004826 ORTHO05D006367 4.0e-20 104.4 405 25.4
Prupe.8G238200 Prunus persica HOM05D004826 ORTHO05D006367 5.2e-20 104.0 430 25.8
FvH4_2g23260 Fragaria vesca HOM05D004826 ORTHO05D006367 6.8e-20 103.6 480 25.8
Rhsim01G0273300 Rhododendron simsii HOM05D004826 ORTHO05D006367 6.8e-20 103.6 290 28.3
Gorai.008G003800 Gossypium raimondii HOM05D004826 ORTHO05D006367 8.9e-20 103.2 348 26.1
Manes.05G079700 Manihot esculenta HOM05D004826 ORTHO05D006367 8.9e-20 103.2 288 28.1
Phvul.001G153300 Phaseolus vulgaris HOM05D004826 ORTHO05D006367 8.9e-20 103.2 486 25.9
Thecc.01G275300 Theobroma cacao HOM05D004826 ORTHO05D006367 8.9e-20 103.2 341 26.4
CANSAT25G1434 Cannabis sativa HOM05D004826 ORTHO05D006367 1.2e-19 102.8 500 26.0
FAN20G2615 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.2e-19 102.8 480 25.8
FAN27G1728 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.2e-19 102.8 487 25.7
Cpa.g.sc2545.1 Carica papaya HOM05D004826 ORTHO05D006367 1.5e-19 102.4 300 27.3
CsaV3_7G027950 Cucumis sativus L. HOM05D004826 ORTHO05D006367 1.5e-19 102.4 343 26.8
FAN15G0865 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.5e-19 102.4 480 25.6
Atru.chr5.1473 Acer truncatum HOM05D004826 ORTHO05D006367 2.0e-19 102.1 297 27.3
FAN24G0969 Fragaria x ananassa HOM05D004826 ORTHO05D006367 2.0e-19 102.1 430 26.5
Oeu025741.1 Olea europaea HOM05D004826 ORTHO05D006367 2.0e-19 102.1 489 26.2
Cc01_g19270 Coffea canephora HOM05D004826 ORTHO05D006367 2.6e-19 101.7 407 27.0
Haze_04685 Corylus avellana HOM05D004826 ORTHO05D006367 2.6e-19 101.7 287 27.9
Hma1.2p1_0822F.1_g224300 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 3.4e-19 101.3 412 26.7
MELO3C015814.2 Cucumis melo HOM05D004826 ORTHO05D006367 4.4e-19 100.9 343 26.5
Gohir.A12G004300 Gossypium hirsutum HOM05D004826 ORTHO05D006367 4.4e-19 100.9 348 25.6
Ah.02g110880 Amaranthus hybridus HOM05D004826 ORTHO05D006367 5.8e-19 100.5 345 26.1
BraA08t35646Z Brassica rapa HOM05D004826 ORTHO05D006367 5.8e-19 100.5 423 26.0
MD11G1282600 Malus domestica HOM05D004826 ORTHO05D006367 5.8e-19 100.5 419 25.8
BolC8t46840H Brassica oleracea HOM05D004826 ORTHO05D006367 1.3e-18 99.4 422 25.8
Duzib138G1281 Durio zibethinus HOM05D004826 ORTHO05D006367 1.7e-18 99.0 346 24.9
Gohir.D12G004000 Gossypium hirsutum HOM05D004826 ORTHO05D006367 2.2e-18 98.6 355 26.2
AT1G03110 Arabidopsis thaliana HOM05D004826 ORTHO05D006367 2.9e-18 98.2 423 25.1
EL10Ac5g10541 Beta vulgaris HOM05D004826 ORTHO05D006367 2.9e-18 98.2 333 26.1
GSVIVG01001175001 Vitis vinifera HOM05D004826 ORTHO05D006367 2.9e-18 98.2 355 26.2
MSTRG.18248 Avicennia marina HOM05D004826 ORTHO05D006367 6.4e-18 97.1 480 25.6
PGR044G1874 Punica granatum HOM05D004826 ORTHO05D006367 6.4e-18 97.1 238 29.8
THA.LOC104801247 Tarenaya hassleriana HOM05D004826 ORTHO05D006367 8.3e-18 96.7 502 24.7
Eucgr.K03351 Eucalyptus grandis HOM05D004826 ORTHO05D006367 1.1e-17 96.3 340 24.7
Potri.005G211600 Populus trichocarpa HOM05D004826 ORTHO05D006367 1.4e-17 95.9 353 26.1
Cre08.g374800 Chlamydomonas reinhardtii HOM05D004826 ORTHO05D006367 1.9e-17 95.5 613 25.1
Sp1g02120 Schrenkiella parvula HOM05D004826 ORTHO05D006367 1.9e-17 95.5 488 24.8
Lalb_Chr01g0020091 Lupinus albus HOM05D004826 ORTHO05D006367 2.4e-17 95.1 421 25.2
AUR62028599 Chenopodium quinoa HOM05D004826 ORTHO05D006367 3.2e-17 94.7 502 24.9
CARHR002460 Cardamine hirsuta HOM05D004826 ORTHO05D006367 4.1e-17 94.4 486 24.1
AL1G12580 Arabidopsis lyrata HOM05D004826 ORTHO05D006367 5.4e-17 94.0 424 25.0
C05p01720 Brassica napus HOM05D004826 ORTHO05D006367 5.4e-17 94.0 261 29.5
AUR62032326 Chenopodium quinoa HOM05D004826 ORTHO05D006367 5.4e-17 94.0 489 24.7
COL.COLO4_09064 Corchorus olitorius HOM05D004826 ORTHO05D003095 9.2e-17 93.2 364 24.5
HPP92_006117 Vanilla planifolia HOM05D004826 ORTHO05D006367 9.2e-17 93.2 343 25.4
TWI75G1621 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 1.2e-16 92.8 295 26.1
HanXRQChr04g0118961 Helianthus annuus HOM05D004826 ORTHO05D006367 2.1e-16 92.0 488 24.8
Carub.0001s0225 Capsella rubella HOM05D004826 ORTHO05D006367 1.3e-15 89.4 491 23.6
ClCG09G007220 Citrullus lanatus HOM05D004826 ORTHO05D006367 1.3e-15 89.4 358 24.9
Ciclev10020269m.g Citrus clementina HOM05D004826 ORTHO05D006367 1.7e-15 89.0 468 25.6
Thhalv10007706m.g Eutrema salsugineum HOM05D004826 ORTHO05D006367 2.3e-15 88.6 499 23.6
Aa31LG1G9410 Aethionema arabicum HOM05D004826 ORTHO05D006367 6.6e-15 87.0 436 25.7
CDE06G0967 Ceratophyllum demersum HOM05D004826 ORTHO05D006367 1.9e-14 85.5 501 24.6
MD03G1261900 Malus domestica HOM05D004826 ORTHO05D006367 1.9e-14 85.5 239 28.9
SHI16389 Sapria himalayana HOM05D000105 ORTHO05D000023 5.6e-14 84.0 219 27.9
RcHm_v2.0_Chr6g0290571 Rosa chinensis HOM05D004826 ORTHO05D006367 2.8e-13 81.6 267 25.8
unitig_0.g133 Utricularia gibba HOM05D004826 ORTHO05D006367 2.8e-13 81.6 368 23.9
Zm00001eb215000 Zea mays HOM05D004826 ORTHO05D006367 7.6e-11 73.6 277 27.1
CiPaw.07G089800 Carya illinoinensis HOM05D004826 ORTHO05D006367 1.1e-09 69.7 286 25.2
CSS0007905 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 1.9e-09 68.9 155 28.4
CSS0022346 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 1.6e-08 65.9 155 26.5
A10p01740 Brassica napus HOM05D004826 ORTHO05D006367 2.7e-08 65.1 196 26.5
Nitab4.5_0005696g0030 Nicotiana tabacum HOM05D004826 ORTHO05D006367 2.7e-08 65.1 266 24.8
Sed0001689 Sechium edule HOM05D004826 ORTHO05D006367 6.6e-07 60.5 315 23.5
Hma1.2p1_0822F.1_g224310 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 3.3e-06 58.2 165 27.3


User provided reference genes

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