Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G355 Micromonas commoda HOM05D006286 ORTHO05D007741 1.6e-103 379.4 187 100.0
Pp3c22_4190 Physcomitrium patens HOM05D006286 ORTHO05D007741 1.9e-32 143.3 179 46.9
PGSC0003DMG400024248 Solanum tuberosum HOM05D006286 ORTHO05D007741 6.4e-28 128.3 207 41.1
Nitab4.5_0004911g0020 Nicotiana tabacum HOM05D006286 ORTHO05D007741 3.2e-27 125.9 207 42.0
Sopen03g002810 Solanum pennellii HOM05D006286 ORTHO05D007741 4.1e-27 125.6 207 40.1
Nitab4.5_0000832g0010 Nicotiana tabacum HOM05D006286 ORTHO05D007741 5.4e-27 125.2 198 42.4
Solyc03g006820.3 Solanum lycopersicum HOM05D006286 ORTHO05D007741 5.4e-27 125.2 207 40.1
CAN.G1097.8 Capsicum annuum HOM05D006286 ORTHO05D007741 7.0e-27 124.8 207 40.6
Cc02_g03560 Coffea canephora HOM05D006286 ORTHO05D007741 7.0e-27 124.8 206 40.8
PRCOL_00006636 Prasinoderma coloniale HOM05D006286 ORTHO05D007741 1.2e-26 124.0 196 45.9
AUR62016058 Chenopodium quinoa HOM05D006286 ORTHO05D007741 1.6e-26 123.6 197 41.1
AUR62021266 Chenopodium quinoa HOM05D006286 ORTHO05D007741 1.6e-26 123.6 198 40.9
Gohir.A09G179500 Gossypium hirsutum HOM05D006286 ORTHO05D007741 2.0e-26 123.2 208 38.5
Lj8A31T63 Lonicera japonica HOM05D006286 ORTHO05D007741 2.0e-26 123.2 201 40.3
ECA238G1566 Erigeron canadensis HOM05D006286 ORTHO05D007741 2.7e-26 122.9 209 38.3
Peaxi162Scf00192g00519 Petunia axillaris HOM05D006286 ORTHO05D007741 3.5e-26 122.5 200 42.0
Gorai.006G196900 Gossypium raimondii HOM05D006286 ORTHO05D007741 7.8e-26 121.3 208 37.5
Mapoly0028s0137 Marchantia polymorpha HOM05D006286 ORTHO05D007741 1.3e-25 120.6 200 38.0
Rhsim03G0175100 Rhododendron simsii HOM05D006286 ORTHO05D007741 3.9e-25 119.0 207 37.7
SMO139G0115 Selaginella moellendorffii HOM05D006286 ORTHO05D007741 3.9e-25 119.0 195 41.5
Thecc.03G167300 Theobroma cacao HOM05D006286 ORTHO05D007741 3.9e-25 119.0 208 38.9
Phvul.007G065700 Phaseolus vulgaris HOM05D006286 ORTHO05D007741 6.6e-25 118.2 211 37.0
AT5G51880 Arabidopsis thaliana HOM05D006286 ORTHO05D007741 8.6e-25 117.9 210 37.1
CANSAT25G1059 Cannabis sativa HOM05D006286 ORTHO05D007741 1.1e-24 117.5 209 38.8
Sp6g14140 Schrenkiella parvula HOM05D006286 ORTHO05D007741 1.1e-24 117.5 210 37.1
Sed0023063 Sechium edule HOM05D006286 ORTHO05D007741 1.1e-24 117.5 208 38.9
unitig_37.g11947 Utricularia gibba HOM05D006286 ORTHO05D007741 1.1e-24 117.5 210 39.0
HanXRQChr14g0461801 Helianthus annuus HOM05D006286 ORTHO05D007741 1.5e-24 117.1 207 37.7
Lsat_1_v5_gn_2_130220 Lactuca sativa HOM05D006286 ORTHO05D007741 1.9e-24 116.7 211 37.4
TPR.G17410 Trifolium pratense HOM05D006286 ORTHO05D007741 1.9e-24 116.7 211 37.0
Glyma.10G240400 Glycine max HOM05D006286 ORTHO05D007741 2.5e-24 116.3 209 37.3
BcaC04g20627 Brassica carinata HOM05D006286 ORTHO05D007741 3.3e-24 115.9 212 36.8
C09p41380 Brassica napus HOM05D006286 ORTHO05D007741 3.3e-24 115.9 212 36.8
BolC9t57014H Brassica oleracea HOM05D006286 ORTHO05D007741 3.3e-24 115.9 212 36.8
Duzib084G1364 Durio zibethinus HOM05D006286 ORTHO05D007741 3.3e-24 115.9 199 39.2
MD01G1193900 Malus domestica HOM05D006286 ORTHO05D007741 3.3e-24 115.9 207 37.7
Psat6g201680 Pisum sativum HOM05D006286 ORTHO05D007741 3.3e-24 115.9 211 37.4
QL09p015278 Quercus lobata HOM05D006286 ORTHO05D007741 3.3e-24 115.9 208 38.0
AL8G26180 Arabidopsis lyrata HOM05D006286 ORTHO05D007741 4.3e-24 115.5 210 36.7
Carub.0008s1192 Capsella rubella HOM05D006286 ORTHO05D007741 4.3e-24 115.5 210 36.7
Cpa.g.sc4.205 Carica papaya HOM05D006286 ORTHO05D007741 4.3e-24 115.5 211 37.0
CsaV3_3G016660 Cucumis sativus L. HOM05D006286 ORTHO05D007741 4.3e-24 115.5 208 38.0
Eucgr.A02845 Eucalyptus grandis HOM05D006286 ORTHO05D007741 4.3e-24 115.5 208 38.0
SGA_v2.0_scaffold113G31783 Striga asiatica HOM05D006286 ORTHO05D007741 4.3e-24 115.5 201 38.8
MELO3C006861.2 Cucumis melo HOM05D006286 ORTHO05D007741 5.6e-24 115.2 208 38.0
Aa31sc908G10 Aethionema arabicum HOM05D006286 ORTHO05D007741 7.3e-24 114.8 210 37.6
Ciclev10005723m.g Citrus clementina HOM05D006286 ORTHO05D007741 7.3e-24 114.8 208 37.0
Haze_13788 Corylus avellana HOM05D006286 ORTHO05D007741 7.3e-24 114.8 208 37.5
TAR629G0337 Trochodendron aralioides HOM05D006286 ORTHO05D007741 7.3e-24 114.8 206 37.9
arahy.Tifrunner.gnm1.ann1.MQ4KH5 Arachis hypogaea HOM05D006286 ORTHO05D007741 9.5e-24 114.4 211 37.9
ClCG05G007720 Citrullus lanatus HOM05D006286 ORTHO05D007741 9.5e-24 114.4 208 38.0
Lj5g0022226 Lotus japonicus HOM05D006286 ORTHO05D007741 9.5e-24 114.4 211 37.4
Prupe.2G287700 Prunus persica HOM05D006286 ORTHO05D007741 9.5e-24 114.4 206 37.9
PGR042G3452 Punica granatum HOM05D006286 ORTHO05D007741 9.5e-24 114.4 194 39.7
TWI39G0272 Tripterygium wilfordii HOM05D006286 ORTHO05D007741 9.5e-24 114.4 208 38.0
A10p09720 Brassica napus HOM05D006286 ORTHO05D007741 1.2e-23 114.0 214 36.0
BraA10t43052Z Brassica rapa HOM05D006286 ORTHO05D007741 1.2e-23 114.0 214 36.0
CSS0046699 Camellia sinensis var. sinensis HOM05D006286 ORTHO05D007741 1.2e-23 114.0 207 36.7
DCAR_018141 Daucus carota HOM05D006286 ORTHO05D007741 1.2e-23 114.0 202 39.1
Aqoxy7G00487 Aquilegia oxysepala HOM05D006286 ORTHO05D007741 1.6e-23 113.6 189 39.7
BcaB08g35541 Brassica carinata HOM05D006286 ORTHO05D007741 1.6e-23 113.6 214 36.0
Ca_10810_v3 Cicer arietinum L. HOM05D006286 ORTHO05D007741 2.1e-23 113.2 211 36.5
Thhalv10014484m.g Eutrema salsugineum HOM05D006286 ORTHO05D007741 2.1e-23 113.2 211 36.0
Actinidia25052 Actinidia chinensis HOM05D006286 ORTHO05D007741 4.7e-23 112.1 207 37.2
CDE12G0688 Ceratophyllum demersum HOM05D006286 ORTHO05D007741 4.7e-23 112.1 196 37.8
Nn1g01303 Nelumbo nucifera HOM05D006286 ORTHO05D007741 4.7e-23 112.1 206 37.9
RcHm_v2.0_Chr1g0376301 Rosa chinensis HOM05D006286 ORTHO05D007741 4.7e-23 112.1 208 37.0
EL10Ac3g05740 Beta vulgaris HOM05D006286 ORTHO05D007741 6.2e-23 111.7 197 39.1
Cfa008258 Carpinus fangiana HOM05D006286 ORTHO05D007741 6.2e-23 111.7 208 37.0
Dinv28504 Davidia involucrata HOM05D006286 ORTHO05D007741 6.2e-23 111.7 199 38.7
Manes.14G030600 Manihot esculenta HOM05D006286 ORTHO05D007741 6.2e-23 111.7 208 36.5
Oeu047963.2 Olea europaea HOM05D006286 ORTHO05D007741 6.2e-23 111.7 210 38.1
CARHR264790 Cardamine hirsuta HOM05D006286 ORTHO05D007741 8.1e-23 111.3 202 36.6
Gohir.D13G056900 Gossypium hirsutum HOM05D006286 ORTHO05D007741 8.1e-23 111.3 207 37.2
CiPaw.03G100700 Carya illinoinensis HOM05D006286 ORTHO05D007741 1.1e-22 110.9 208 36.5
FAN03G0223 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.1e-22 110.9 208 37.0
FAN03G0937 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.1e-22 110.9 208 37.0
FAN06G1618 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.1e-22 110.9 208 37.0
Gorai.013G064300 Gossypium raimondii HOM05D006286 ORTHO05D007741 1.1e-22 110.9 207 37.2
Atru.chr1.554 Acer truncatum HOM05D006286 ORTHO05D007741 1.4e-22 110.5 208 36.5
ATR0757G128 Amborella trichopoda HOM05D006286 ORTHO05D007741 1.4e-22 110.5 208 36.1
FAN01G0056 Fragaria x ananassa HOM05D006286 ORTHO05D007741 1.4e-22 110.5 208 37.0
vmacro06741 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 1.4e-22 110.5 203 37.9
PSO782G2014 Papaver somniferum HOM05D006286 ORTHO05D007741 1.8e-22 110.2 200 37.5
Ah.13g067810 Amaranthus hybridus HOM05D006286 ORTHO05D007741 2.3e-22 109.8 188 39.9
Migut.F00396 Erythranthe guttata HOM05D006286 ORTHO05D007741 2.3e-22 109.8 209 37.8
FAN10G3629 Fragaria x ananassa HOM05D006286 ORTHO05D007741 2.3e-22 109.8 208 37.0
Sabra15G0147300 Salix brachista HOM05D006286 ORTHO05D007741 2.3e-22 109.8 208 35.6
GSVIVG01018444001 Vitis vinifera HOM05D006286 ORTHO05D007741 2.3e-22 109.8 206 36.4
FvH4_7g28750 Fragaria vesca HOM05D006286 ORTHO05D007741 3.1e-22 109.4 208 36.5
FAN06G4550 Fragaria x ananassa HOM05D006286 ORTHO05D007741 3.1e-22 109.4 208 36.5
PSO478G4977 Papaver somniferum HOM05D006286 ORTHO05D007741 3.1e-22 109.4 200 37.0
MSTRG.8433 Avicennia marina HOM05D006286 ORTHO05D007741 4.0e-22 109.0 209 37.3
Potri.015G135300 Populus trichocarpa HOM05D006286 ORTHO05D007741 4.0e-22 109.0 208 35.1
Os03g0119000 Oryza sativa ssp. japonica HOM05D006286 ORTHO05D007741 5.2e-22 108.6 188 39.4
HPP92_003528 Vanilla planifolia HOM05D006286 ORTHO05D007741 6.8e-22 108.2 198 37.4
Lalb_Chr06g0160901 Lupinus albus HOM05D006286 ORTHO05D007741 8.9e-22 107.8 211 35.5
Hund04686 Selenicereus undatus HOM05D006286 ORTHO05D007741 1.2e-21 107.5 188 38.8
PSO782G5477 Papaver somniferum HOM05D006286 ORTHO05D007741 1.5e-21 107.1 200 37.0
Rhsim09G0195200 Rhododendron simsii HOM05D006286 ORTHO05D007741 1.5e-21 107.1 208 37.0
Gohir.A13G064700 Gossypium hirsutum HOM05D006286 ORTHO05D007741 2.0e-21 106.7 207 36.7
vmacro09869 Vaccinium macrocarpon HOM05D006286 ORTHO05D007741 5.8e-21 105.1 207 36.2
Sc13g0008250 Simmondsia chinensis HOM05D006286 ORTHO05D007741 9.8e-21 104.4 206 35.4
THA.LOC104825086 Tarenaya hassleriana HOM05D006286 ORTHO05D007741 1.7e-20 103.6 209 34.4
VMungo0720G2540 Vigna mungo HOM05D006286 ORTHO05D007741 2.9e-20 102.8 204 34.8
AagrBONN_evm.TU.Sc2ySwM_368.2699 Anthoceros agrestis HOM05D006286 ORTHO05D007741 4.9e-20 102.1 168 39.9
SalBow2G2245 Salvia bowleyana HOM05D006286 ORTHO05D007741 2.4e-19 99.8 209 34.9
Actinidia14215 Actinidia chinensis HOM05D006286 ORTHO05D007741 7.1e-19 98.2 196 37.2
SEGI_34239 Sequoiadendron giganteum HOM05D006286 ORTHO05D007741 2.7e-18 96.3 158 39.9
arahy.Tifrunner.gnm1.ann1.TWGE9F Arachis hypogaea HOM05D006286 ORTHO05D007741 1.7e-17 93.6 186 37.1
Cfa025685 Carpinus fangiana HOM05D006286 ORTHO05D007741 1.1e-16 90.9 177 35.0
Gohir.D09G174800 Gossypium hirsutum HOM05D006286 ORTHO05D007741 2.5e-16 89.7 128 41.4
COL.COLO4_14231 Corchorus olitorius HOM05D006286 ORTHO05D007741 4.3e-16 89.0 152 38.2
Medtr1g101840 Medicago truncatula HOM05D006286 ORTHO05D007741 7.3e-16 88.2 131 40.5
MBI12_g36686_MAGBIO Magnolia biondii HOM05D006286 ORTHO05D007741 2.8e-15 86.3 155 38.1
Glyma.20G154300 Glycine max HOM05D006286 ORTHO05D007741 1.4e-14 84.0 155 37.4
Zm00001eb001360 Zea mays HOM05D006286 ORTHO05D007741 6.8e-14 81.6 149 40.3
CiPaw.15G075500 Carya illinoinensis HOM05D006286 ORTHO05D007741 6.4e-12 75.1 187 30.5
Cre14.g619900 Chlamydomonas reinhardtii HOM05D006286 ORTHO05D007741 2.4e-11 73.2 192 32.8
Actinidia03097 Actinidia chinensis HOM05D006286 ORTHO05D007741 1.0e-09 67.8 120 37.5
Gohir.A09G232500 Gossypium hirsutum HOM05D000373 ORTHO05D001146 1.1e-06 57.8 202 29.7
Gorai.006G256500 Gossypium raimondii HOM05D000373 ORTHO05D001146 1.1e-06 57.8 202 29.7
MCO03G036 Micromonas commoda HOM05D037152 ORTHO05D034124 1.1e-06 57.8 211 28.9
Gohir.D09G233600 Gossypium hirsutum HOM05D000373 ORTHO05D001146 1.4e-06 57.4 202 29.7
PGSC0003DMG400030788 Solanum tuberosum HOM05D000373 ORTHO05D001146 1.8e-06 57.0 178 29.2
GSVIVG01017841001 Vitis vinifera HOM05D000373 ORTHO05D001146 2.4e-06 56.6 192 30.2
Solyc06g054490.3 Solanum lycopersicum HOM05D000373 ORTHO05D001146 3.1e-06 56.2 178 29.2
Sopen06g019560 Solanum pennellii HOM05D000373 ORTHO05D001146 3.1e-06 56.2 178 29.2
AL3G17190 Arabidopsis lyrata HOM05D000373 ORTHO05D001146 8.9e-06 54.7 178 30.3
Lj6A666T46 Lonicera japonica HOM05D000373 ORTHO05D001146 8.9e-06 54.7 178 30.3


User provided reference genes

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