Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G295 Micromonas commoda HOM05D000002 ORTHO05D006339 0.0e+00 1785.4 892 100.0
AagrBONN_evm.TU.Sc2ySwM_340.348 Anthoceros agrestis HOM05D000002 ORTHO05D006339 1.3e-190 671.0 954 40.9
BraA03t12208Z Brassica rapa HOM05D000002 ORTHO05D006339 5.8e-188 662.1 947 40.4
SEGI_16871 Sequoiadendron giganteum HOM05D000002 ORTHO05D006339 5.8e-188 662.1 946 40.0
A03p30240 Brassica napus HOM05D000002 ORTHO05D006339 2.9e-187 659.8 947 40.3
BolC3t15962H Brassica oleracea HOM05D000002 ORTHO05D006339 3.8e-187 659.4 946 40.0
QL11p008633 Quercus lobata HOM05D000002 ORTHO05D006339 1.1e-186 657.9 942 40.1
C03p36490 Brassica napus HOM05D000002 ORTHO05D006339 1.4e-186 657.5 944 40.0
PSO782G0950 Papaver somniferum HOM05D000002 ORTHO05D006339 1.9e-186 657.1 958 40.0
AUR62038500 Chenopodium quinoa HOM05D000002 ORTHO05D006339 7.1e-186 655.2 944 40.1
MELO3C003929.2 Cucumis melo HOM05D000002 ORTHO05D006339 1.2e-185 654.4 933 39.5
Hund15434 Selenicereus undatus HOM05D000002 ORTHO05D006339 1.6e-185 654.1 949 39.7
PSO063G6760 Papaver somniferum HOM05D000002 ORTHO05D006339 2.7e-185 653.3 947 40.1
Peaxi162Scf00694g00221 Petunia axillaris HOM05D000002 ORTHO05D006339 2.3e-184 650.2 929 39.7
ClCG11G011400 Citrullus lanatus HOM05D000002 ORTHO05D006339 3.9e-184 649.4 942 39.8
CsaV3_2G009090 Cucumis sativus L. HOM05D000002 ORTHO05D006339 5.1e-184 649.0 933 39.3
Mapoly0004s0293 Marchantia polymorpha HOM05D000002 ORTHO05D006339 5.1e-184 649.0 943 40.4
CANSAT80G2875 Cannabis sativa HOM05D000002 ORTHO05D006339 1.1e-183 647.9 945 39.6
CSS0036040 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D006339 1.5e-183 647.5 949 39.1
Thhalv10028405m.g Eutrema salsugineum HOM05D000002 ORTHO05D006339 1.5e-183 647.5 952 39.4
AUR62014228 Chenopodium quinoa HOM05D000002 ORTHO05D006339 1.9e-183 647.1 945 39.6
Lj2g0025887 Lotus japonicus HOM05D000002 ORTHO05D006339 1.9e-183 647.1 940 39.3
Solyc01g087670.3 Solanum lycopersicum HOM05D000002 ORTHO05D006339 3.3e-183 646.4 940 39.3
arahy.Tifrunner.gnm1.ann1.2JX1G7 Arachis hypogaea HOM05D000002 ORTHO05D006339 4.3e-183 646.0 932 40.1
Nitab4.5_0000707g0040 Nicotiana tabacum HOM05D000002 ORTHO05D006339 4.3e-183 646.0 940 39.4
CSS0014851 Camellia sinensis var. sinensis HOM05D000002 ORTHO05D006339 7.4e-183 645.2 949 39.0
RcHm_v2.0_Chr4g0397311 Rosa chinensis HOM05D000002 ORTHO05D006339 7.4e-183 645.2 950 39.4
Sed0008706 Sechium edule HOM05D000002 ORTHO05D006339 7.4e-183 645.2 935 39.3
Migut.N01789 Erythranthe guttata HOM05D000002 ORTHO05D006339 2.1e-182 643.7 947 39.3
Sopen01g034630 Solanum pennellii HOM05D000002 ORTHO05D006339 2.1e-182 643.7 940 39.1
CAN.G219.70 Capsicum annuum HOM05D000002 ORTHO05D006339 3.7e-182 642.9 941 39.2
PGSC0003DMG400006784 Solanum tuberosum HOM05D000002 ORTHO05D006339 4.8e-182 642.5 945 39.3
TPR.G21348 Trifolium pratense HOM05D000002 ORTHO05D006339 4.8e-182 642.5 940 39.4
Medtr6g093060 Medicago truncatula HOM05D000002 ORTHO05D006339 6.3e-182 642.1 930 39.6
Os06g0644600 Oryza sativa ssp. japonica HOM05D000002 ORTHO05D006339 1.4e-181 641.0 934 39.0
HanXRQChr01g0007691 Helianthus annuus HOM05D000002 ORTHO05D006339 1.8e-181 640.6 944 39.2
PGR044G0614 Punica granatum HOM05D000002 ORTHO05D006339 1.8e-181 640.6 935 40.3
FvH4_4g06010 Fragaria vesca HOM05D000002 ORTHO05D006339 2.4e-181 640.2 952 38.9
Prupe.1G063600 Prunus persica HOM05D000002 ORTHO05D006339 2.4e-181 640.2 938 39.1
arahy.Tifrunner.gnm1.ann1.M3F3BS Arachis hypogaea HOM05D000002 ORTHO05D006339 3.1e-181 639.8 948 39.7
Lalb_Chr24g0394161 Lupinus albus HOM05D000002 ORTHO05D006339 3.1e-181 639.8 942 39.1
Sp6g04020 Schrenkiella parvula HOM05D000002 ORTHO05D006339 4.1e-181 639.4 948 39.0
AT4G04940 Arabidopsis thaliana HOM05D000002 ORTHO05D006339 5.3e-181 639.0 953 38.6
Pp3c7_4500 Physcomitrium patens HOM05D000002 ORTHO05D006339 9.0e-181 638.3 957 39.3
Psat1g051320 Pisum sativum HOM05D000002 ORTHO05D006339 9.0e-181 638.3 938 39.3
Aqoxy6G00620 Aquilegia oxysepala HOM05D000002 ORTHO05D006339 1.2e-180 637.9 948 38.9
arahy.Tifrunner.gnm1.ann1.BDIQ8A Arachis hypogaea HOM05D000002 ORTHO05D006339 1.2e-180 637.9 948 39.2
TWI34G1979 Tripterygium wilfordii HOM05D000002 ORTHO05D006339 1.2e-180 637.9 950 38.8
CDE07G0379 Ceratophyllum demersum HOM05D000002 ORTHO05D006339 1.5e-180 637.5 940 40.4
CARHR252600 Cardamine hirsuta HOM05D000002 ORTHO05D006339 2.0e-180 637.1 945 38.5
Potri.006G078900 Populus trichocarpa HOM05D000002 ORTHO05D006339 2.0e-180 637.1 950 40.1
Lsat_1_v5_gn_1_27101 Lactuca sativa HOM05D000002 ORTHO05D006339 2.6e-180 636.7 917 40.0
Glyma.01G001600 Glycine max HOM05D000002 ORTHO05D006339 3.4e-180 636.3 935 39.0
Gohir.D08G026300 Gossypium hirsutum HOM05D000002 ORTHO05D006339 3.4e-180 636.3 937 39.3
GSVIVG01034133001 Vitis vinifera HOM05D000002 ORTHO05D006339 3.4e-180 636.3 936 39.4
Gorai.004G022700 Gossypium raimondii HOM05D000002 ORTHO05D006339 4.5e-180 636.0 937 39.3
THA.LOC104815310 Tarenaya hassleriana HOM05D000002 ORTHO05D006339 4.5e-180 636.0 939 38.9
Thecc.09G200300 Theobroma cacao HOM05D000002 ORTHO05D006339 5.9e-180 635.6 939 39.2
Cc02_g28480 Coffea canephora HOM05D000002 ORTHO05D006339 1.0e-179 634.8 946 38.6
Phvul.004G178100 Phaseolus vulgaris HOM05D000002 ORTHO05D006339 1.0e-179 634.8 941 38.9
Duzib150G0743 Durio zibethinus HOM05D000002 ORTHO05D006339 1.3e-179 634.4 941 39.3
COL.COLO4_34912 Corchorus olitorius HOM05D000002 ORTHO05D006339 1.7e-179 634.0 939 39.1
DCAR_015254 Daucus carota HOM05D000002 ORTHO05D006339 2.9e-179 633.3 943 39.6
Gohir.A08G016100 Gossypium hirsutum HOM05D000002 ORTHO05D006339 2.9e-179 633.3 942 38.9
CiPaw.16G104400 Carya illinoinensis HOM05D000002 ORTHO05D006339 3.8e-179 632.9 937 39.3
Aa31LG9G9550 Aethionema arabicum HOM05D000002 ORTHO05D006339 6.5e-179 632.1 944 38.0
AL6G48450 Arabidopsis lyrata HOM05D000002 ORTHO05D006339 6.5e-179 632.1 944 39.1
Dinv42804 Davidia involucrata HOM05D000002 ORTHO05D006339 6.5e-179 632.1 945 39.0
Dinv43297 Davidia involucrata HOM05D000002 ORTHO05D006339 6.5e-179 632.1 945 39.0
MD16G1237800 Malus domestica HOM05D000002 ORTHO05D006339 1.1e-178 631.3 942 38.5
Sabra06G0059800 Salix brachista HOM05D000002 ORTHO05D006339 1.1e-178 631.3 943 39.4
FAN07G2584 Fragaria x ananassa HOM05D000002 ORTHO05D006339 1.4e-178 630.9 951 38.9
Glyma.08G359600 Glycine max HOM05D000002 ORTHO05D006339 1.4e-178 630.9 938 38.8
Ciclev10007395m.g Citrus clementina HOM05D000002 ORTHO05D006339 1.9e-178 630.6 939 38.4
Nn8g41139 Nelumbo nucifera HOM05D000002 ORTHO05D006339 2.5e-178 630.2 943 38.6
Eucgr.C02168 Eucalyptus grandis HOM05D000002 ORTHO05D006339 3.2e-178 629.8 948 38.9
Carub.0006s3286 Capsella rubella HOM05D000002 ORTHO05D006339 5.5e-178 629.0 944 38.2
Nitab4.5_0004053g0040 Nicotiana tabacum HOM05D000002 ORTHO05D006339 9.3e-178 628.2 933 38.7
SMO361G0562 Selaginella moellendorffii HOM05D000002 ORTHO05D006339 1.6e-177 627.5 938 38.8
MD13G1232300 Malus domestica HOM05D000002 ORTHO05D006339 4.6e-177 625.9 937 38.1
ECA248G1039 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.3e-176 624.4 940 38.7
MSTRG.4228 Avicennia marina HOM05D000002 ORTHO05D006339 2.3e-176 623.6 941 38.8
Cfa020756 Carpinus fangiana HOM05D000002 ORTHO05D006339 2.3e-176 623.6 943 38.8
Ca_25635_v3 Cicer arietinum L. HOM05D000002 ORTHO05D006339 2.3e-176 623.6 892 40.9
CBR_g5707 Chara braunii HOM05D000002 ORTHO05D006339 6.7e-176 622.1 975 37.7
MBI16_g00838_MAGBIO Magnolia biondii HOM05D000002 ORTHO05D006339 6.7e-176 622.1 909 40.7
Atru.chr7.1011 Acer truncatum HOM05D000002 ORTHO05D006339 1.1e-175 621.3 944 38.2
VMungo0464G2179 Vigna mungo HOM05D000002 ORTHO05D006339 5.7e-175 619.0 912 39.3
vmacro13695 Vaccinium macrocarpon HOM05D000002 ORTHO05D006339 7.4e-175 618.6 909 39.7
Rhsim07G0058700 Rhododendron simsii HOM05D000002 ORTHO05D006339 2.2e-174 617.1 983 37.8
FAN22G1697 Fragaria x ananassa HOM05D000002 ORTHO05D006339 2.8e-174 616.7 962 38.0
Sc16g0001110 Simmondsia chinensis HOM05D000002 ORTHO05D006339 6.3e-174 615.5 901 40.3
Sc16g0000960 Simmondsia chinensis HOM05D000002 ORTHO05D006339 1.1e-173 614.8 901 40.1
SGA_v2.0_scaffold7G03720 Striga asiatica HOM05D000002 ORTHO05D006339 4.5e-172 609.4 945 38.0
Cre10.g466250 Chlamydomonas reinhardtii HOM05D000002 ORTHO05D006339 8.2e-166 588.6 1109 35.5
FAN12G3290 Fragaria x ananassa HOM05D000002 ORTHO05D006339 4.1e-165 586.3 952 37.2
TAR369G0907 Trochodendron aralioides HOM05D000002 ORTHO05D006339 1.2e-164 584.7 901 38.3
Oeu027399.3 Olea europaea HOM05D000002 ORTHO05D006339 3.4e-164 583.2 928 37.2
MBI15_g00655_MAGBIO Magnolia biondii HOM05D000002 ORTHO05D006339 1.3e-163 581.3 922 38.8
Hma1.2p1_0269F.1_g107850 Hydrangea macrophylla HOM05D000002 ORTHO05D006339 1.2e-161 574.7 900 37.3
Oeu033365.1 Olea europaea HOM05D000002 ORTHO05D006339 2.1e-161 573.9 931 37.2
EL10Ac6g14036 Beta vulgaris HOM05D000002 ORTHO05D006339 3.0e-160 570.1 1165 33.1
Haze_19096 Corylus avellana HOM05D000002 ORTHO05D006339 1.4e-157 561.2 1063 34.4
ATR0626G089 Amborella trichopoda HOM05D000002 ORTHO05D006339 1.6e-156 557.8 899 37.2
BcaC09g51499 Brassica carinata HOM05D000002 ORTHO05D006339 3.5e-156 556.6 916 37.6
Lj4C850T6 Lonicera japonica HOM05D000002 ORTHO05D006339 1.0e-155 555.1 658 44.4
arahy.Tifrunner.gnm1.ann1.TJ5BAV Arachis hypogaea HOM05D000002 ORTHO05D006339 2.9e-155 553.5 977 36.3
Manes.18G125600 Manihot esculenta HOM05D000002 ORTHO05D006339 8.2e-150 535.4 946 34.9
unitig_747.g21292 Utricularia gibba HOM05D000002 ORTHO05D006339 9.4e-146 521.9 929 36.0
HPP92_004726 Vanilla planifolia HOM05D000002 ORTHO05D006339 1.8e-144 517.7 922 36.2
Potri.018G148066 Populus trichocarpa HOM05D000002 ORTHO05D006339 1.5e-114 418.3 468 46.8
Zm00001eb386980 Zea mays HOM05D000002 ORTHO05D006339 4.6e-108 396.7 635 36.7
Lj6A285T32 Lonicera japonica HOM05D000002 ORTHO05D006339 1.4e-96 358.6 380 47.9
Ah.07g204660 Amaranthus hybridus HOM05D000002 ORTHO05D006339 3.4e-79 300.8 347 45.0
Hma1.2p1_0269F.1_g107860 Hydrangea macrophylla HOM05D000002 ORTHO05D006339 1.3e-73 282.3 561 32.4
Hma1.2p1_0269F.1_g107870 Hydrangea macrophylla HOM05D000002 ORTHO05D006339 2.6e-71 274.6 579 32.3
Lj6A285T31 Lonicera japonica HOM05D000002 ORTHO05D006339 7.6e-71 273.1 552 33.7
Cpa.g.c29901 Carica papaya HOM05D000002 ORTHO05D006339 2.4e-64 251.5 309 41.4
Migut.O00915 Erythranthe guttata HOM05D000002 ORTHO05D006339 2.2e-62 245.0 517 31.5
FAN17G1253 Fragaria x ananassa HOM05D000002 ORTHO05D006339 1.6e-52 212.2 448 33.7
RcHm_v2.0_Chr4g0397361 Rosa chinensis HOM05D000002 ORTHO05D006339 5.7e-50 203.8 216 43.5
Potri.018G148132 Populus trichocarpa HOM05D000002 ORTHO05D006339 1.6e-36 159.1 365 31.5
arahy.Tifrunner.gnm1.ann1.A2CGEK Arachis hypogaea HOM05D000002 ORTHO05D006339 1.5e-34 152.5 167 43.1
arahy.Tifrunner.gnm1.ann1.YYM1IM Arachis hypogaea HOM05D000002 ORTHO05D006339 1.0e-30 139.8 192 38.5
Cpa.g.sc74.40 Carica papaya HOM05D000002 ORTHO05D006339 2.5e-29 135.2 363 29.5
SHI03137 Sapria himalayana HOM05D000002 ORTHO05D006339 4.2e-29 134.4 161 43.5
arahy.Tifrunner.gnm1.ann1.I3DX6F Arachis hypogaea HOM05D000002 ORTHO05D006339 9.4e-29 133.3 170 40.6
Cpa.g.sc74.37 Carica papaya HOM05D000002 ORTHO05D006339 5.9e-23 114.0 82 63.4
Gohir.A12G176700 Gossypium hirsutum HOM05D000002 ORTHO05D006339 1.4e-19 102.8 106 49.1
arahy.Tifrunner.gnm1.ann1.G0QTUI Arachis hypogaea HOM05D000002 ORTHO05D006339 1.8e-16 92.4 108 43.5
RcHm_v2.0_Chr4g0397341 Rosa chinensis HOM05D000002 ORTHO05D006339 3.9e-14 84.7 99 41.4
BraA10t43787Z Brassica rapa HOM05D000002 ORTHO05D006339 9.5e-13 80.1 142 35.2
TPR.G23483 Trifolium pratense HOM05D000002 ORTHO05D006339 4.7e-12 77.8 160 33.1
A10p17070 Brassica napus HOM05D000002 ORTHO05D006339 1.7e-09 69.3 127 34.6
Gohir.A10G137800 Gossypium hirsutum HOM05D005723 ORTHO05D005968 2.9e-09 68.6 73 46.6
DCAR_007461 Daucus carota HOM05D000464 ORTHO05D006292 9.2e-08 63.5 125 32.0
Lj4C850T7 Lonicera japonica HOM05D000002 ORTHO05D006339 2.0e-07 62.4 251 27.1
Ca_25605_v3 Cicer arietinum L. HOM05D000002 ORTHO05D006339 2.7e-07 62.0 79 41.8
CiPaw.11G014000 Carya illinoinensis HOM05D000464 ORTHO05D006292 3.5e-07 61.6 128 32.0
SHI17349 Sapria himalayana HOM05D000464 ORTHO05D006292 3.5e-07 61.6 148 31.8
EL10Ac7g18034 Beta vulgaris HOM05D000464 ORTHO05D006292 4.6e-07 61.2 141 31.2
CAN.G472.58 Capsicum annuum HOM05D000464 ORTHO05D006292 6.0e-07 60.8 136 33.1
AUR62001250 Chenopodium quinoa HOM05D000464 ORTHO05D006292 7.8e-07 60.5 136 30.1
unitig_21.g20437 Utricularia gibba HOM05D000464 ORTHO05D006292 7.8e-07 60.5 135 31.1
Ah.08g218380 Amaranthus hybridus HOM05D000464 ORTHO05D006292 1.0e-06 60.1 116 31.9
DCAR_026196 Daucus carota HOM05D000464 ORTHO05D006292 1.0e-06 60.1 125 31.2
Sabra15G0110600 Salix brachista HOM05D000464 ORTHO05D000408 1.0e-06 60.1 128 29.7
PGR083G1837 Punica granatum HOM05D000464 ORTHO05D006292 1.3e-06 59.7 119 31.1
A10p08470 Brassica napus HOM05D000464 ORTHO05D006292 2.3e-06 58.9 128 32.8
MELO3C026239.2 Cucumis melo HOM05D000464 ORTHO05D006292 2.3e-06 58.9 120 30.8
CsaV3_1G000870 Cucumis sativus L. HOM05D000464 ORTHO05D006292 2.3e-06 58.9 120 30.8
Rhsim08G0181600 Rhododendron simsii HOM05D000464 ORTHO05D006292 2.3e-06 58.9 115 29.6
AUR62022080 Chenopodium quinoa HOM05D000464 ORTHO05D006292 3.0e-06 58.5 115 29.6
Lj4g0023649 Lotus japonicus HOM05D000464 ORTHO05D006292 3.0e-06 58.5 115 31.3
Psat4g062800 Pisum sativum HOM05D000464 ORTHO05D006292 3.9e-06 58.2 122 31.1
Hund05615 Selenicereus undatus HOM05D000464 ORTHO05D006292 3.9e-06 58.2 115 28.7
Actinidia11916 Actinidia chinensis HOM05D000464 ORTHO05D000408 5.0e-06 57.8 115 27.8
HanXRQChr04g0100971 Helianthus annuus HOM05D000464 ORTHO05D006292 5.0e-06 57.8 115 30.4
Lsat_1_v5_gn_1_28641 Lactuca sativa HOM05D000464 ORTHO05D006292 5.0e-06 57.8 116 31.0
Medtr4g104380 Medicago truncatula HOM05D000464 ORTHO05D006292 5.0e-06 57.8 121 29.8
SEGI_39654 Sequoiadendron giganteum HOM05D000464 ORTHO05D006292 5.0e-06 57.8 119 32.8
arahy.Tifrunner.gnm1.ann1.01LB4B Arachis hypogaea HOM05D000002 ORTHO05D006339 8.6e-06 57.0 63 44.4
arahy.Tifrunner.gnm1.ann1.FU8P75 Arachis hypogaea HOM05D000002 ORTHO05D006339 8.6e-06 57.0 63 44.4


User provided reference genes

Program Settings