Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO04G267 Micromonas commoda HOM05D003463 ORTHO05D004206 0.0e+00 2573.1 1343 100.0
Manes.13G074400 Manihot esculenta HOM05D003463 ORTHO05D004206 7.0e-44 184.1 749 26.0
COL.COLO4_13026 Corchorus olitorius HOM05D003463 ORTHO05D004206 1.1e-41 176.8 751 25.2
Sed0018482 Sechium edule HOM05D003463 ORTHO05D004206 1.5e-41 176.4 754 25.6
ECA233G2663 Erigeron canadensis HOM05D003463 ORTHO05D004206 3.3e-41 175.3 746 24.4
Medtr2g089080 Medicago truncatula HOM05D003463 ORTHO05D004206 3.3e-41 175.3 754 25.2
Rhsim06G0155700 Rhododendron simsii HOM05D003463 ORTHO05D004206 1.2e-40 173.3 753 25.5
TPR.G30794 Trifolium pratense HOM05D003463 ORTHO05D004206 1.2e-40 173.3 755 25.3
PSO675G4322 Papaver somniferum HOM05D003463 ORTHO05D004206 1.6e-40 172.9 755 25.2
Lj3g0003812 Lotus japonicus HOM05D003463 ORTHO05D004206 2.8e-40 172.2 755 24.9
Lsat_1_v5_gn_8_129901 Lactuca sativa HOM05D003463 ORTHO05D004206 8.0e-40 170.6 752 24.6
PSO541G5151 Papaver somniferum HOM05D003463 ORTHO05D004206 8.0e-40 170.6 755 25.0
PRCOL_00001206 Prasinoderma coloniale HOM05D003463 ORTHO05D004206 8.0e-40 170.6 705 26.7
Sp7g13400 Schrenkiella parvula HOM05D003463 ORTHO05D004206 8.0e-40 170.6 752 25.1
Dinv18548 Davidia involucrata HOM05D003463 ORTHO05D004206 1.0e-39 170.2 756 25.8
GSVIVG01030649001 Vitis vinifera HOM05D003463 ORTHO05D004206 1.4e-39 169.9 753 24.8
Psat0s3330g0040 Pisum sativum HOM05D003463 ORTHO05D004206 2.3e-39 169.1 753 25.4
FAN05G2372 Fragaria x ananassa HOM05D003463 ORTHO05D004206 3.1e-39 168.7 755 25.0
Sed0025509 Sechium edule HOM05D003463 ORTHO05D004206 5.2e-39 167.9 755 24.8
Aa31LG8G8660 Aethionema arabicum HOM05D003463 ORTHO05D004206 6.8e-39 167.5 753 24.6
A01p22340 Brassica napus HOM05D003463 ORTHO05D004206 6.8e-39 167.5 753 25.2
BraA01t02149Z Brassica rapa HOM05D003463 ORTHO05D004206 6.8e-39 167.5 753 25.2
MELO3C018791.2 Cucumis melo HOM05D003463 ORTHO05D004206 6.8e-39 167.5 757 24.6
PGR042G2093 Punica granatum HOM05D003463 ORTHO05D004206 6.8e-39 167.5 748 25.0
AagrBONN_evm.TU.Sc2ySwM_117.2770 Anthoceros agrestis HOM05D003463 ORTHO05D004206 8.9e-39 167.2 760 24.9
Oeu011067.1 Olea europaea HOM05D003463 ORTHO05D004206 8.9e-39 167.2 750 25.1
Pp3c7_5920 Physcomitrium patens HOM05D003463 ORTHO05D004206 8.9e-39 167.2 746 25.2
Pp3c7_5929 Physcomitrium patens HOM05D003463 ORTHO05D004206 8.9e-39 167.2 746 25.2
AL7G40500 Arabidopsis lyrata HOM05D003463 ORTHO05D004206 1.2e-38 166.8 752 25.1
Ciclev10014009m.g Citrus clementina HOM05D003463 ORTHO05D004206 1.2e-38 166.8 756 25.7
Cc05_g05330 Coffea canephora HOM05D003463 ORTHO05D004206 1.2e-38 166.8 674 24.9
Migut.M00384 Erythranthe guttata HOM05D003463 ORTHO05D004206 1.2e-38 166.8 751 25.4
BcaNung00300 Brassica carinata HOM05D003463 ORTHO05D004206 1.5e-38 166.4 753 25.4
CAN.G86.25 Capsicum annuum HOM05D003463 ORTHO05D004206 1.5e-38 166.4 673 25.1
Dinv10901 Davidia involucrata HOM05D003463 ORTHO05D004206 2.0e-38 166.0 750 25.1
Thhalv10024183m.g Eutrema salsugineum HOM05D003463 ORTHO05D004206 2.0e-38 166.0 756 24.9
Nn1g06924 Nelumbo nucifera HOM05D003463 ORTHO05D004206 2.0e-38 166.0 673 25.6
SMO365G0046 Selaginella moellendorffii HOM05D003463 ORTHO05D004206 2.0e-38 166.0 462 27.5
Sopen07g026490 Solanum pennellii HOM05D003463 ORTHO05D004206 2.0e-38 166.0 666 24.8
CDE11G1115 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 2.6e-38 165.6 752 24.9
Hund08062 Selenicereus undatus HOM05D003463 ORTHO05D004206 2.6e-38 165.6 673 26.3
Solyc07g052940.4 Solanum lycopersicum HOM05D003463 ORTHO05D004206 2.6e-38 165.6 666 24.8
TWI18G0507 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 2.6e-38 165.6 671 25.9
FvH4_6g43760 Fragaria vesca HOM05D003463 ORTHO05D004206 3.4e-38 165.2 680 25.3
Glyma.06G301900 Glycine max HOM05D003463 ORTHO05D004206 3.4e-38 165.2 746 24.0
Glyma.12G196800 Glycine max HOM05D003463 ORTHO05D004206 3.4e-38 165.2 674 25.1
MD17G1091000 Malus domestica HOM05D003463 ORTHO05D004206 3.4e-38 165.2 753 25.0
TWI36G1584 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 3.4e-38 165.2 502 27.7
AT4G15180 Arabidopsis thaliana HOM05D003463 ORTHO05D004206 4.4e-38 164.9 752 25.0
Ca_01564_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 4.4e-38 164.9 752 24.2
Glyma.12G102400 Glycine max HOM05D003463 ORTHO05D004206 4.4e-38 164.9 748 24.2
Lalb_Chr14g0375591 Lupinus albus HOM05D003463 ORTHO05D004206 5.8e-38 164.5 678 25.5
Potri.007G119300 Populus trichocarpa HOM05D003463 ORTHO05D004206 5.8e-38 164.5 672 25.4
BcaB02g07835 Brassica carinata HOM05D003463 ORTHO05D004206 7.5e-38 164.1 751 25.2
FAN09G4547 Fragaria x ananassa HOM05D003463 ORTHO05D004206 7.5e-38 164.1 679 25.0
Lj1C753T3 Lonicera japonica HOM05D003463 ORTHO05D004206 7.5e-38 164.1 677 25.4
Gohir.D02G186400 Gossypium hirsutum HOM05D003463 ORTHO05D004206 9.8e-38 163.7 749 24.8
Gorai.005G208600 Gossypium raimondii HOM05D003463 ORTHO05D004206 9.8e-38 163.7 749 24.8
HanXRQChr17g0563751 Helianthus annuus HOM05D003463 ORTHO05D004206 9.8e-38 163.7 748 24.1
Peaxi162Scf00007g01417 Petunia axillaris HOM05D003463 ORTHO05D004206 9.8e-38 163.7 746 24.3
SalBow7G2865 Salvia bowleyana HOM05D003463 ORTHO05D004206 9.8e-38 163.7 755 25.8
CBR_g54148 Chara braunii HOM05D003463 ORTHO05D004206 1.3e-37 163.3 672 25.4
Eucgr.A01739 Eucalyptus grandis HOM05D003463 ORTHO05D004206 1.3e-37 163.3 760 25.7
CsaV3_7G003880 Cucumis sativus L. HOM05D003463 ORTHO05D004206 1.7e-37 162.9 758 24.4
Glyma.13G305000 Glycine max HOM05D003463 ORTHO05D004206 1.7e-37 162.9 674 24.9
Lalb_Chr19g0135651 Lupinus albus HOM05D003463 ORTHO05D004206 1.7e-37 162.9 753 25.6
Thecc.02G164300 Theobroma cacao HOM05D003463 ORTHO05D004206 1.7e-37 162.9 694 26.1
Cpa.g.sc8.254 Carica papaya HOM05D003463 ORTHO05D004206 2.2e-37 162.5 493 27.8
Cfa014461 Carpinus fangiana HOM05D003463 ORTHO05D004206 2.2e-37 162.5 673 24.8
MD09G1103200 Malus domestica HOM05D003463 ORTHO05D004206 2.2e-37 162.5 752 24.6
CiPaw.03G164300 Carya illinoinensis HOM05D003463 ORTHO05D004206 2.9e-37 162.2 752 25.0
Sc21g0001820 Simmondsia chinensis HOM05D003463 ORTHO05D004206 2.9e-37 162.2 754 25.3
Duzib052G0139 Durio zibethinus HOM05D003463 ORTHO05D004206 3.7e-37 161.8 676 25.7
Pp3c11_18840 Physcomitrium patens HOM05D003463 ORTHO05D004206 3.7e-37 161.8 747 25.3
C01p27890 Brassica napus HOM05D003463 ORTHO05D004206 4.9e-37 161.4 680 25.9
BolC1t02722H Brassica oleracea HOM05D003463 ORTHO05D004206 4.9e-37 161.4 680 25.9
Ca_20672_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 6.4e-37 161.0 665 24.8
Nitab4.5_0001134g0130 Nicotiana tabacum HOM05D003463 ORTHO05D004206 6.4e-37 161.0 745 23.8
Potri.017G041100 Populus trichocarpa HOM05D003463 ORTHO05D004206 6.4e-37 161.0 692 25.1
VMungo1080G1634 Vigna mungo HOM05D003463 ORTHO05D004206 6.4e-37 161.0 673 24.5
BcaC09g50202 Brassica carinata HOM05D003463 ORTHO05D004206 8.3e-37 160.6 680 25.9
Gohir.A03G162950 Gossypium hirsutum HOM05D003463 ORTHO05D004206 8.3e-37 160.6 749 24.6
Medtr4g045743 Medicago truncatula HOM05D003463 ORTHO05D004206 8.3e-37 160.6 746 24.4
Phvul.005G112000 Phaseolus vulgaris HOM05D003463 ORTHO05D004206 8.3e-37 160.6 673 24.2
A05p17060 Brassica napus HOM05D003463 ORTHO05D004206 1.1e-36 160.2 751 24.9
C06p16490 Brassica napus HOM05D003463 ORTHO05D004206 1.1e-36 160.2 752 25.1
BolC6t36852H Brassica oleracea HOM05D003463 ORTHO05D004206 1.1e-36 160.2 752 25.1
BraA05t20607Z Brassica rapa HOM05D003463 ORTHO05D004206 1.1e-36 160.2 751 24.9
SEGI_02831 Sequoiadendron giganteum HOM05D003463 ORTHO05D004206 1.1e-36 160.2 666 25.2
Atru.chr6.3118 Acer truncatum HOM05D003463 ORTHO05D004206 1.4e-36 159.8 688 24.4
BcaC08g44245 Brassica carinata HOM05D003463 ORTHO05D004206 1.4e-36 159.8 752 25.1
Zm00001eb171790 Zea mays HOM05D003463 ORTHO05D004206 1.4e-36 159.8 460 27.0
Nn1g03744 Nelumbo nucifera HOM05D003463 ORTHO05D004206 1.9e-36 159.5 753 24.4
QL08p034245 Quercus lobata HOM05D003463 ORTHO05D004206 1.9e-36 159.5 672 24.7
CANSAT64G0087 Cannabis sativa HOM05D003463 ORTHO05D004206 2.4e-36 159.1 672 26.3
Zm00001eb413080 Zea mays HOM05D003463 ORTHO05D004206 2.4e-36 159.1 461 26.9
CARHR221910 Cardamine hirsuta HOM05D003463 ORTHO05D004206 3.2e-36 158.7 751 24.4
TPR.G19054 Trifolium pratense HOM05D003463 ORTHO05D004206 4.1e-36 158.3 668 24.9
Lj3g0021154 Lotus japonicus HOM05D003463 ORTHO05D004206 7.0e-36 157.5 677 25.3
SMO135G0001 Selaginella moellendorffii HOM05D003463 ORTHO05D004206 7.0e-36 157.5 355 29.6
ATR0804G005 Amborella trichopoda HOM05D003463 ORTHO05D004206 9.2e-36 157.1 672 25.1
Os08g0180100 Oryza sativa ssp. japonica HOM05D003463 ORTHO05D004206 9.2e-36 157.1 349 29.8
TAR629G1280 Trochodendron aralioides HOM05D003463 ORTHO05D004206 1.2e-35 156.8 672 25.0
Actinidia12489 Actinidia chinensis HOM05D003463 ORTHO05D004206 1.6e-35 156.4 752 25.4
SGA_v2.0_scaffold34G13880 Striga asiatica HOM05D003463 ORTHO05D004206 1.6e-35 156.4 752 24.6
CDE05G3394 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 2.0e-35 156.0 745 24.3
Prupe.3G222600 Prunus persica HOM05D003463 ORTHO05D004206 2.0e-35 156.0 677 25.0
FAN02G4525 Fragaria x ananassa HOM05D003463 ORTHO05D004206 3.5e-35 155.2 690 24.9
Nitab4.5_0003429g0030 Nicotiana tabacum HOM05D003463 ORTHO05D004206 3.5e-35 155.2 676 25.0
THA.LOC104808502 Tarenaya hassleriana HOM05D003463 ORTHO05D004206 3.5e-35 155.2 751 24.9
FAN14G1979 Fragaria x ananassa HOM05D003463 ORTHO05D004206 4.6e-35 154.8 766 24.0
Psat7g193080 Pisum sativum HOM05D003463 ORTHO05D004206 1.3e-34 153.3 665 24.7
vmacro12241 Vaccinium macrocarpon HOM05D003463 ORTHO05D004206 1.3e-34 153.3 755 24.6
RcHm_v2.0_Chr2g0160501 Rosa chinensis HOM05D003463 ORTHO05D004206 1.7e-34 152.9 674 24.2
TAR627G0487 Trochodendron aralioides HOM05D003463 ORTHO05D004206 1.7e-34 152.9 747 24.2
DCAR_021199 Daucus carota HOM05D003463 ORTHO05D004206 3.0e-34 152.1 782 25.3
Eucgr.E02490 Eucalyptus grandis HOM05D003463 ORTHO05D004206 3.0e-34 152.1 610 26.1
Haze_12964 Corylus avellana HOM05D003463 ORTHO05D004206 5.0e-34 151.4 690 25.2
Aqoxy4G01913 Aquilegia oxysepala HOM05D003463 ORTHO05D004206 1.9e-33 149.4 667 25.3
DCAR_009696 Daucus carota HOM05D003463 ORTHO05D004206 3.3e-33 148.7 758 25.1
Duzib248G0717 Durio zibethinus HOM05D003463 ORTHO05D004206 4.3e-33 148.3 400 28.0
CiPaw.04G119100 Carya illinoinensis HOM05D003463 ORTHO05D004206 1.2e-32 146.7 747 23.7
EL10Ac9g22340 Beta vulgaris HOM05D003463 ORTHO05D004206 1.6e-32 146.4 500 25.0
CSS0031394 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 4.7e-32 144.8 163 39.9
MCO11G062 Micromonas commoda HOM05D003463 ORTHO05D004206 6.2e-32 144.4 423 27.9
Cre17.g742700 Chlamydomonas reinhardtii HOM05D003463 ORTHO05D004206 8.1e-32 144.1 253 34.0
Mapoly0021s0105 Marchantia polymorpha HOM05D003463 ORTHO05D004206 3.1e-31 142.1 665 24.1
Sabra17G0027900 Salix brachista HOM05D003463 ORTHO05D004206 2.6e-30 139.0 541 25.7
Oeu035823.1 Olea europaea HOM05D003463 ORTHO05D004206 1.6e-27 129.8 294 29.3
SHI10282 Sapria himalayana HOM05D003463 ORTHO05D004206 5.2e-23 114.8 755 23.8
Ah.01g005040 Amaranthus hybridus HOM05D003463 ORTHO05D004206 3.2e-20 105.5 694 22.2
Hma1.2p1_1378F.1_g279185 Hydrangea macrophylla HOM05D003463 ORTHO05D004206 3.2e-20 105.5 569 24.8
RcHm_v2.0_Chr2g0131041 Rosa chinensis HOM05D003463 ORTHO05D004206 8.7e-10 70.9 119 30.3
Hma1.2p1_2477F.1_g322850 Hydrangea macrophylla HOM05D003463 ORTHO05D004206 1.5e-09 70.1 85 36.5
MCO13G449 Micromonas commoda HOM05D051756 ORTHO05D006658 1.8e-07 63.2 100 36.0
MCO02G273 Micromonas commoda HOM05D002377 ORTHO05D003486 1.2e-06 60.5 58 46.6
Ah.10g035720 Amaranthus hybridus HOM05D000590 ORTHO05D009145 4.4e-06 58.5 75 38.7
THA.LOC104820765 Tarenaya hassleriana HOM05D000728 ORTHO05D001586 7.6e-06 57.8 157 26.1
HanXRQChr01g0030621 Helianthus annuus HOM05D000590 ORTHO05D009145 9.9e-06 57.4 75 37.3
Lsat_1_v5_gn_1_43780 Lactuca sativa HOM05D000590 ORTHO05D009145 9.9e-06 57.4 75 37.3


User provided reference genes

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