Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO03G344 Micromonas commoda HOM05D009333 ORTHO05D011489 0.0e+00 3956.4 2215 100.0
Cre07.g333535 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 4.6e-109 401.4 2629 23.5
Cre12.g532350 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 1.9e-94 352.8 666 34.2
PRCOL_00001301 Prasinoderma coloniale HOM05D009333 ORTHO05D011489 1.8e-92 346.3 584 38.0
MCO14G402 Micromonas commoda HOM05D009333 ORTHO05D011489 3.0e-92 345.5 630 35.2
MCO04G064 Micromonas commoda HOM05D009333 ORTHO05D011489 5.0e-87 328.2 635 34.8
MCO16G469 Micromonas commoda HOM05D009333 ORTHO05D011489 7.4e-83 314.3 618 33.5
Cre16.g665100 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 2.7e-69 269.2 2451 22.3
MCO13G580 Micromonas commoda HOM05D009333 ORTHO05D011489 2.7e-69 269.2 585 34.0
Cre11.g467528 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 1.7e-66 260.0 768 29.7
PRCOL_00002631 Prasinoderma coloniale HOM05D009333 ORTHO05D011489 5.3e-65 255.0 655 28.5
MCO16G144 Micromonas commoda HOM05D009333 ORTHO05D011489 7.0e-65 254.6 624 30.9
PRCOL_00003146 Prasinoderma coloniale HOM05D009333 ORTHO05D011489 1.6e-64 253.4 584 32.4
Cre16.g667350 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 2.7e-64 252.7 612 31.5
Cre10.g444850 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 3.5e-64 252.3 601 30.8
Cre16.g665050 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 5.5e-62 245.0 2383 21.6
Cre17.g720600 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 2.1e-61 243.0 671 31.0
Cre17.g702850 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 5.7e-59 235.0 663 29.4
MCO04G501 Micromonas commoda HOM05D009333 ORTHO05D011489 3.2e-54 219.2 674 28.0
MCO14G141 Micromonas commoda HOM05D009333 ORTHO05D011489 1.2e-53 217.2 720 26.7
PRCOL_00001059 Prasinoderma coloniale HOM05D009333 ORTHO05D011489 1.8e-44 186.8 615 25.4
Mapoly0069s0001 Marchantia polymorpha HOM05D009333 ORTHO05D011489 2.9e-42 179.5 678 24.0
Mapoly0016s0197 Marchantia polymorpha HOM05D009333 ORTHO05D011489 6.2e-37 161.8 561 24.2
AagrBONN_evm.TU.Sc2ySwM_368.2114 Anthoceros agrestis HOM05D009333 ORTHO05D011489 8.9e-36 157.9 435 27.8
Cfa026594 Carpinus fangiana HOM05D009333 ORTHO05D011489 2.8e-29 136.3 655 22.7
Pp3c26_6020 Physcomitrium patens HOM05D009333 ORTHO05D011489 2.4e-25 123.2 408 26.5
Cre16.g667451 Chlamydomonas reinhardtii HOM05D009333 ORTHO05D011489 1.5e-19 104.0 317 28.7
Lj3g0012901 Lotus japonicus HOM05D003674 ORTHO05D004226 6.9e-12 78.6 227 28.2
PSO210G7128 Papaver somniferum HOM05D003674 ORTHO05D004226 1.5e-11 77.4 235 26.8
PSO832G0572 Papaver somniferum HOM05D003674 ORTHO05D004226 1.5e-11 77.4 273 25.6
unitig_749.g13960 Utricularia gibba HOM05D003674 ORTHO05D004226 5.8e-11 75.5 293 24.6
Ciclev10014388m.g Citrus clementina HOM05D003674 ORTHO05D004226 9.9e-11 74.7 236 28.0
ECA234G3736 Erigeron canadensis HOM05D003674 ORTHO05D004226 1.3e-10 74.3 226 28.8
Medtr2g090380 Medicago truncatula HOM05D003674 ORTHO05D004226 1.7e-10 73.9 228 27.6
Psat5g272320 Pisum sativum HOM05D003674 ORTHO05D004226 1.7e-10 73.9 227 29.1
Sp6g03570 Schrenkiella parvula HOM05D003674 ORTHO05D004226 1.7e-10 73.9 237 26.6
AagrBONN_evm.TU.Sc2ySwM_344.5080 Anthoceros agrestis HOM05D003674 ORTHO05D004226 2.2e-10 73.6 267 26.6
MD09G1247300 Malus domestica HOM05D003674 ORTHO05D004226 2.9e-10 73.2 225 29.3
MD17G1240200 Malus domestica HOM05D003674 ORTHO05D004226 2.9e-10 73.2 221 28.1
RcHm_v2.0_Chr2g0126551 Rosa chinensis HOM05D003674 ORTHO05D004226 2.9e-10 73.2 219 27.9
vmacro12305 Vaccinium macrocarpon HOM05D003674 ORTHO05D004226 2.9e-10 73.2 219 27.9
GSVIVG01020549001 Vitis vinifera HOM05D003674 ORTHO05D004226 2.9e-10 73.2 219 27.4
CSS0035927 Camellia sinensis var. sinensis HOM05D003674 ORTHO05D004226 8.4e-10 71.6 221 28.1
TAR624G0345 Trochodendron aralioides HOM05D003674 ORTHO05D004226 8.4e-10 71.6 221 27.6
VMungo0464G1662 Vigna mungo HOM05D003674 ORTHO05D004226 8.4e-10 71.6 227 26.9
RcHm_v2.0_Chr2g0126531 Rosa chinensis HOM05D003674 ORTHO05D004226 1.1e-09 71.2 219 27.4
Actinidia11076 Actinidia chinensis HOM05D003674 ORTHO05D004226 1.4e-09 70.9 221 26.7
Aqoxy4G00814 Aquilegia oxysepala HOM05D003674 ORTHO05D004226 1.4e-09 70.9 268 25.7
Lalb_Chr22g0356561 Lupinus albus HOM05D003674 ORTHO05D004226 1.4e-09 70.9 221 26.7
TWI75G1008 Tripterygium wilfordii HOM05D003674 ORTHO05D004226 1.9e-09 70.5 221 27.6
AL6G49310 Arabidopsis lyrata HOM05D003674 ORTHO05D004226 2.4e-09 70.1 221 26.7
Prupe.3G138600 Prunus persica HOM05D003674 ORTHO05D004226 2.4e-09 70.1 358 24.9
FvH4_6g26210 Fragaria vesca HOM05D003674 ORTHO05D004226 3.2e-09 69.7 222 27.0
HanXRQChr10g0297111 Helianthus annuus HOM05D003674 ORTHO05D004226 3.2e-09 69.7 226 27.9
THA.LOC104826033 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 3.2e-09 69.7 304 24.0
TPR.G6424 Trifolium pratense HOM05D003674 ORTHO05D004226 4.2e-09 69.3 227 26.0
MSTRG.14332 Avicennia marina HOM05D003674 ORTHO05D004226 5.4e-09 68.9 221 26.2
Dinv23635 Davidia involucrata HOM05D003674 ORTHO05D004226 5.4e-09 68.9 221 27.1
Hma1.2p1_2586F.1_g324940 Hydrangea macrophylla HOM05D003674 ORTHO05D004226 5.4e-09 68.9 219 26.0
Os01g0678500 Oryza sativa ssp. japonica HOM05D003674 ORTHO05D004226 5.4e-09 68.9 271 25.1
COL.COLO4_30194 Corchorus olitorius HOM05D003674 ORTHO05D004226 7.1e-09 68.6 221 26.7
Glyma.12G204400 Glycine max HOM05D003674 ORTHO05D004226 7.1e-09 68.6 230 26.1
THA.LOC104801172 Tarenaya hassleriana HOM05D003674 ORTHO05D004226 7.1e-09 68.6 226 25.7
EL10Ac9g20767 Beta vulgaris HOM05D003674 ORTHO05D004226 9.3e-09 68.2 221 27.6
Lsat_1_v5_gn_4_66721 Lactuca sativa HOM05D003674 ORTHO05D004226 9.3e-09 68.2 226 27.0
Actinidia11032 Actinidia chinensis HOM05D003674 ORTHO05D004226 1.2e-08 67.8 221 25.3
MSTRG.14342 Avicennia marina HOM05D003674 ORTHO05D004226 1.2e-08 67.8 233 28.3
Glyma.13G296900 Glycine max HOM05D003674 ORTHO05D004226 1.2e-08 67.8 230 26.1
arahy.Tifrunner.gnm1.ann1.1TZ75T Arachis hypogaea HOM05D003674 ORTHO05D004226 1.6e-08 67.4 226 26.1
FAN02G2237 Fragaria x ananassa HOM05D003674 ORTHO05D004226 1.6e-08 67.4 227 27.3
TAR624G0173 Trochodendron aralioides HOM05D003674 ORTHO05D004226 1.6e-08 67.4 226 27.0
CiPaw.03G177300 Carya illinoinensis HOM05D003674 ORTHO05D004226 2.1e-08 67.0 221 26.7
Phvul.004G108300 Phaseolus vulgaris HOM05D003674 ORTHO05D004226 2.1e-08 67.0 230 25.2
Pp3c2_10230 Physcomitrium patens HOM05D003674 ORTHO05D004226 2.1e-08 67.0 209 26.8
Oeu017490.2 Olea europaea HOM05D003674 ORTHO05D004226 3.5e-08 66.2 247 25.1
Sc12g0003090 Simmondsia chinensis HOM05D003674 ORTHO05D004226 4.6e-08 65.9 221 26.7
BcaC04g23961 Brassica carinata HOM05D003674 ORTHO05D004226 6.0e-08 65.5 221 26.7
A09p02830 Brassica napus HOM05D000230 ORTHO05D000176 6.0e-08 65.5 221 26.7
BolC9t53217H Brassica oleracea HOM05D003674 ORTHO05D004226 6.0e-08 65.5 221 26.7
BraA09t35927Z Brassica rapa HOM05D003674 ORTHO05D004226 6.0e-08 65.5 221 26.7
Solyc07g053970.3 Solanum lycopersicum HOM05D003674 ORTHO05D004226 1.0e-07 64.7 221 25.8
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 1.0e-07 64.7 221 25.8
BcaB01g01906 Brassica carinata HOM05D003674 ORTHO05D004226 1.3e-07 64.3 221 27.6
DCAR_021245 Daucus carota HOM05D003674 ORTHO05D004226 2.3e-07 63.5 303 22.4
Peaxi162Scf00132g00119 Petunia axillaris HOM05D003674 ORTHO05D004226 2.3e-07 63.5 226 25.7
SalBow1G0286 Salvia bowleyana HOM05D003674 ORTHO05D004226 2.3e-07 63.5 238 24.8
Sed0011332 Sechium edule HOM05D003674 ORTHO05D004226 2.3e-07 63.5 226 24.8
BcaB01g02542 Brassica carinata HOM05D003674 ORTHO05D004226 3.0e-07 63.2 221 24.9
Thhalv10029480m.g Eutrema salsugineum HOM05D003674 ORTHO05D004226 3.0e-07 63.2 226 25.7
SGA_v2.0_scaffold322G48614 Striga asiatica HOM05D003674 ORTHO05D004226 3.0e-07 63.2 226 25.7
CARHR251990 Cardamine hirsuta HOM05D003674 ORTHO05D004226 3.9e-07 62.8 221 25.3
HanXRQChr06g0179591 Helianthus annuus HOM05D003674 ORTHO05D004226 3.9e-07 62.8 226 25.7
Pp3c19_18680 Physcomitrium patens HOM05D003674 ORTHO05D004226 3.9e-07 62.8 159 30.8
Rhsim06G0142000 Rhododendron simsii HOM05D003674 ORTHO05D004226 3.9e-07 62.8 122 31.1
Zm00001eb360320 Zea mays HOM05D003674 ORTHO05D004226 5.1e-07 62.4 265 22.6
Carub.0006s3351 Capsella rubella HOM05D003674 ORTHO05D004226 6.6e-07 62.0 221 25.3
CAN.G248.4 Capsicum annuum HOM05D003674 ORTHO05D004226 6.6e-07 62.0 221 24.0
AT4G03560 Arabidopsis thaliana HOM05D003674 ORTHO05D004226 8.7e-07 61.6 221 25.3
BcaC01g06668 Brassica carinata HOM05D003674 ORTHO05D004226 8.7e-07 61.6 221 25.3
A03p30360 Brassica napus HOM05D003674 ORTHO05D004226 8.7e-07 61.6 221 25.3
C03p36660 Brassica napus HOM05D003674 ORTHO05D004226 8.7e-07 61.6 221 25.3
BolC3t15980H Brassica oleracea HOM05D003674 ORTHO05D004226 8.7e-07 61.6 221 25.3
BraA03t12218Z Brassica rapa HOM05D003674 ORTHO05D004226 8.7e-07 61.6 221 25.3
Mapoly0002s0274 Marchantia polymorpha HOM05D003674 ORTHO05D004226 8.7e-07 61.6 268 23.9
Aa31LG5G2940 Aethionema arabicum HOM05D003674 ORTHO05D004226 1.5e-06 60.8 226 24.8
Cc05_g07170 Coffea canephora HOM05D003674 ORTHO05D004226 1.9e-06 60.5 290 23.4
Hund01095 Selenicereus undatus HOM05D003674 ORTHO05D004226 2.5e-06 60.1 228 25.4
HPP92_008135 Vanilla planifolia HOM05D003674 ORTHO05D004226 2.5e-06 60.1 222 26.1
arahy.Tifrunner.gnm1.ann1.1DM7TY Arachis hypogaea HOM05D003674 ORTHO05D004226 3.3e-06 59.7 250 23.6
DCAR_013010 Daucus carota HOM05D003674 ORTHO05D004226 3.3e-06 59.7 273 21.6
SalBow1G3138 Salvia bowleyana HOM05D003674 ORTHO05D004226 4.3e-06 59.3 250 23.6
Lsat_1_v5_gn_4_64281 Lactuca sativa HOM05D003674 ORTHO05D004226 7.3e-06 58.5 118 33.1
Nitab4.5_0000512g0020 Nicotiana tabacum HOM05D003674 ORTHO05D004226 9.6e-06 58.2 254 23.6
Nitab4.5_0004344g0030 Nicotiana tabacum HOM05D003674 ORTHO05D004226 9.6e-06 58.2 214 27.6


User provided reference genes

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