Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO02G498 Micromonas commoda HOM05D006987 ORTHO05D000525 8.4e-304 1046.2 520 100.0
Psat5g100080 Pisum sativum HOM05D006987 ORTHO05D000525 9.4e-29 132.5 253 31.6
CBR_g965 Chara braunii HOM05D006987 ORTHO05D000525 2.7e-28 131.0 387 28.2
Sopen09g035240 Solanum pennellii HOM05D006987 ORTHO05D000525 6.1e-28 129.8 212 33.5
Solyc09g092340.4 Solanum lycopersicum HOM05D006987 ORTHO05D000525 1.4e-27 128.6 212 33.5
arahy.Tifrunner.gnm1.ann1.DJC0ES Arachis hypogaea HOM05D006987 ORTHO05D000525 1.8e-27 128.3 244 33.6
PGSC0003DMG400020590 Solanum tuberosum HOM05D006987 ORTHO05D000525 2.3e-27 127.9 212 33.0
arahy.Tifrunner.gnm1.ann1.753CXU Arachis hypogaea HOM05D006987 ORTHO05D000525 3.9e-27 127.1 280 31.8
Lj7C491T10 Lonicera japonica HOM05D006987 ORTHO05D000525 3.9e-27 127.1 224 33.9
Peaxi162Scf00047g00013 Petunia axillaris HOM05D006987 ORTHO05D000525 8.8e-27 125.9 246 30.9
Nitab4.5_0005704g0020 Nicotiana tabacum HOM05D006987 ORTHO05D000525 2.0e-26 124.8 212 32.1
DCAR_024534 Daucus carota HOM05D006987 ORTHO05D000525 3.3e-26 124.0 280 30.4
Duzib212G0873 Durio zibethinus HOM05D006987 ORTHO05D000525 3.3e-26 124.0 234 34.2
Lalb_Chr23g0278321 Lupinus albus HOM05D006987 ORTHO05D000525 4.4e-26 123.6 232 33.6
Lj6g0000072 Lotus japonicus HOM05D006987 ORTHO05D000525 5.7e-26 123.2 236 35.2
Ciclev10005507m.g Citrus clementina HOM05D006987 ORTHO05D000525 1.3e-25 122.1 242 32.6
Dinv38173 Davidia involucrata HOM05D006987 ORTHO05D000525 1.3e-25 122.1 288 29.2
CAN.G1155.32 Capsicum annuum HOM05D006987 ORTHO05D000525 2.2e-25 121.3 210 31.4
Nitab4.5_0000697g0190 Nicotiana tabacum HOM05D006987 ORTHO05D000525 2.2e-25 121.3 212 31.6
Aqoxy2G03934 Aquilegia oxysepala HOM05D006987 ORTHO05D000525 4.8e-25 120.2 205 33.7
Ca_16405_v3 Cicer arietinum L. HOM05D006987 ORTHO05D000525 4.8e-25 120.2 243 31.7
Ca_16413_v3 Cicer arietinum L. HOM05D006987 ORTHO05D000525 4.8e-25 120.2 243 31.7
Sed0013696 Sechium edule HOM05D006987 ORTHO05D000525 1.1e-24 119.0 231 33.3
Cpa.g.sc157.49 Carica papaya HOM05D006987 ORTHO05D000525 1.4e-24 118.6 274 28.8
Cc03_g08460 Coffea canephora HOM05D006987 ORTHO05D000525 1.4e-24 118.6 215 31.6
Zm00001eb088960 Zea mays HOM05D006987 ORTHO05D000525 1.4e-24 118.6 205 33.7
Hma1.2p1_1286F.1_g273110 Hydrangea macrophylla HOM05D006987 ORTHO05D000525 1.8e-24 118.2 210 31.0
PSO063G0584 Papaver somniferum HOM05D006987 ORTHO05D000525 1.8e-24 118.2 224 31.7
Phvul.001G266900 Phaseolus vulgaris HOM05D006987 ORTHO05D000525 1.8e-24 118.2 252 32.9
Prupe.1G164900 Prunus persica HOM05D006987 ORTHO05D000525 2.4e-24 117.9 282 28.7
Glyma.18G002300 Glycine max HOM05D006987 ORTHO05D000525 3.1e-24 117.5 207 32.4
CsaV3_3G010740 Cucumis sativus L. HOM05D006987 ORTHO05D000525 4.1e-24 117.1 254 32.3
PSO017G2771 Papaver somniferum HOM05D006987 ORTHO05D000525 4.1e-24 117.1 224 31.2
Thecc.04G195200 Theobroma cacao HOM05D006987 ORTHO05D000525 4.1e-24 117.1 245 31.0
Actinidia35841 Actinidia chinensis HOM05D006987 ORTHO05D000525 7.0e-24 116.3 210 31.4
ATR0787G042 Amborella trichopoda HOM05D006987 ORTHO05D000525 7.0e-24 116.3 211 33.2
Hund19009 Selenicereus undatus HOM05D006987 ORTHO05D000525 7.0e-24 116.3 244 30.7
CSS0005381 Camellia sinensis var. sinensis HOM05D006987 ORTHO05D000525 9.1e-24 115.9 230 30.4
Lsat_1_v5_gn_1_70741 Lactuca sativa HOM05D006987 ORTHO05D000525 9.1e-24 115.9 220 32.7
Manes.03G144300 Manihot esculenta HOM05D006987 ORTHO05D000525 1.6e-23 115.2 238 31.1
VMungo1383G1416 Vigna mungo HOM05D006987 ORTHO05D000525 1.6e-23 115.2 247 32.4
Cfa014998 Carpinus fangiana HOM05D006987 ORTHO05D000525 2.6e-23 114.4 279 32.3
Eucgr.H02680 Eucalyptus grandis HOM05D006987 ORTHO05D000525 2.6e-23 114.4 240 30.4
Os04g0129200 Oryza sativa ssp. japonica HOM05D006987 ORTHO05D000525 2.6e-23 114.4 200 35.0
TAR362G0731 Trochodendron aralioides HOM05D006987 ORTHO05D000525 7.7e-23 112.8 211 31.3
Migut.G00760 Erythranthe guttata HOM05D006987 ORTHO05D000525 1.0e-22 112.5 210 30.0
Gohir.A10G127500 Gossypium hirsutum HOM05D006987 ORTHO05D000525 1.0e-22 112.5 249 31.7
CDE02G4051 Ceratophyllum demersum HOM05D006987 ORTHO05D000525 1.3e-22 112.1 207 31.9
CARHR219770 Cardamine hirsuta HOM05D006987 ORTHO05D000525 2.2e-22 111.3 234 29.9
Haze_11652 Corylus avellana HOM05D006987 ORTHO05D000525 2.2e-22 111.3 204 34.3
HPP92_022603 Vanilla planifolia HOM05D006987 ORTHO05D000525 2.2e-22 111.3 212 30.7
MSTRG.9797 Avicennia marina HOM05D006987 ORTHO05D000525 5.0e-22 110.2 211 30.3
Gohir.D10G138500 Gossypium hirsutum HOM05D006987 ORTHO05D000525 6.5e-22 109.8 220 31.4
THA.LOC104804799 Tarenaya hassleriana HOM05D006987 ORTHO05D000525 6.5e-22 109.8 261 32.2
Thhalv10025908m.g Eutrema salsugineum HOM05D006987 ORTHO05D000525 8.5e-22 109.4 256 27.7
BraA04t16513Z Brassica rapa HOM05D006987 ORTHO05D000525 1.1e-21 109.0 239 29.7
A04p08240 Brassica napus HOM05D006987 ORTHO05D000525 1.5e-21 108.6 239 29.7
BcaB02g08645 Brassica carinata HOM05D006987 ORTHO05D000525 2.5e-21 107.8 239 30.1
BcaC02g09380 Brassica carinata HOM05D006987 ORTHO05D000525 3.2e-21 107.5 239 29.3
C04p41950 Brassica napus HOM05D006987 ORTHO05D000525 3.2e-21 107.5 239 29.3
BolC4t25783H Brassica oleracea HOM05D006987 ORTHO05D000525 3.2e-21 107.5 239 29.3
ECA248G2055 Erigeron canadensis HOM05D006987 ORTHO05D000525 5.5e-21 106.7 253 30.8
Pp3c12_4220 Physcomitrium patens HOM05D006987 ORTHO05D000525 7.2e-21 106.3 216 30.1
Sp7g11720 Schrenkiella parvula HOM05D006987 ORTHO05D000525 7.2e-21 106.3 233 29.6
TAR362G1315 Trochodendron aralioides HOM05D006987 ORTHO05D000525 7.2e-21 106.3 241 30.7
MBI07_g22388_MAGBIO Magnolia biondii HOM05D006987 ORTHO05D000525 9.4e-21 105.9 226 30.5
SalBow8G0102 Salvia bowleyana HOM05D006987 ORTHO05D000525 9.4e-21 105.9 215 29.8
Gorai.011G153800 Gossypium raimondii HOM05D006987 ORTHO05D000525 1.2e-20 105.5 234 31.6
CANSAT78G0110 Cannabis sativa HOM05D006987 ORTHO05D000525 2.1e-20 104.8 245 29.8
Potri.017G059200 Populus trichocarpa HOM05D006987 ORTHO05D000525 2.1e-20 104.8 242 29.3
vmacro00437 Vaccinium macrocarpon HOM05D006987 ORTHO05D000525 2.1e-20 104.8 156 34.6
CiPaw.01G117000 Carya illinoinensis HOM05D006987 ORTHO05D000525 3.6e-20 104.0 245 30.2
HanXRQChr01g0022161 Helianthus annuus HOM05D006987 ORTHO05D000525 3.6e-20 104.0 260 28.5
COL.COLO4_20229 Corchorus olitorius HOM05D006987 ORTHO05D000525 6.1e-20 103.2 286 29.0
RcHm_v2.0_Chr4g0413601 Rosa chinensis HOM05D006987 ORTHO05D000525 6.1e-20 103.2 245 29.4
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 8.0e-20 102.8 200 29.5
Sc13g0000420 Simmondsia chinensis HOM05D006987 ORTHO05D000525 1.0e-19 102.4 199 31.7
MD05G1230400 Malus domestica HOM05D006987 ORTHO05D000525 1.4e-19 102.1 205 31.2
SMO144G0025 Selaginella moellendorffii HOM05D006987 ORTHO05D000525 2.3e-19 101.3 201 30.8
Aa31LG9G3650 Aethionema arabicum HOM05D006987 ORTHO05D000525 4.0e-19 100.5 220 29.1
Sabra17G0052800 Salix brachista HOM05D006987 ORTHO05D000525 4.0e-19 100.5 197 29.9
TWI59G0841 Tripterygium wilfordii HOM05D006987 ORTHO05D000525 4.0e-19 100.5 230 30.9
FvH4_4g13310 Fragaria vesca HOM05D006987 ORTHO05D000525 8.8e-19 99.4 240 28.8
Carub.0007s2858 Capsella rubella HOM05D006987 ORTHO05D000525 1.2e-18 99.0 236 26.7
AT4G13870 Arabidopsis thaliana HOM05D006987 ORTHO05D000525 1.5e-18 98.6 232 27.2
AUR62018557 Chenopodium quinoa HOM05D006987 ORTHO05D000525 1.5e-18 98.6 211 30.3
MELO3C006293.2 Cucumis melo HOM05D006987 ORTHO05D000525 1.5e-18 98.6 266 28.6
AL7G42630 Arabidopsis lyrata HOM05D006987 ORTHO05D000525 3.3e-18 97.4 232 26.3
AUR62020861 Chenopodium quinoa HOM05D006987 ORTHO05D000525 4.4e-18 97.1 200 31.5
EL10Ac3g07455 Beta vulgaris HOM05D006987 ORTHO05D000525 5.7e-18 96.7 252 29.0
FAN22G1573 Fragaria x ananassa HOM05D006987 ORTHO05D000525 5.7e-18 96.7 271 26.9
MBI11_g28742_MAGBIO Magnolia biondii HOM05D006987 ORTHO05D000525 5.3e-16 90.1 184 30.4
ClCG05G003120 Citrullus lanatus HOM05D006987 ORTHO05D000525 9.1e-16 89.4 235 28.5
Rhsim09G0060400 Rhododendron simsii HOM05D006987 ORTHO05D000525 2.0e-15 88.2 350 23.1
Cre13.g588900 Chlamydomonas reinhardtii HOM05D006987 ORTHO05D000525 1.7e-14 85.1 149 39.6
QL06p025925 Quercus lobata HOM05D006987 ORTHO05D000525 8.5e-14 82.8 154 29.9
TPR.G25382 Trifolium pratense HOM05D006987 ORTHO05D000525 1.5e-13 82.0 236 27.1
Pp3c2_23990 Physcomitrium patens HOM05D000886 ORTHO05D000525 3.2e-13 80.9 198 27.8
GSVIVG01021028001 Vitis vinifera HOM05D006987 ORTHO05D000525 5.5e-13 80.1 214 26.2
Nn3g20082 Nelumbo nucifera HOM05D006987 ORTHO05D000525 4.7e-12 77.0 134 31.3
Glyma.11G254800 Glycine max HOM05D006987 ORTHO05D000525 2.3e-11 74.7 197 26.4
PGR083G1328 Punica granatum HOM05D006987 ORTHO05D000525 4.0e-11 73.9 213 26.3
SGA_v2.0_scaffold19G08780 Striga asiatica HOM05D006987 ORTHO05D000525 8.8e-11 72.8 233 25.3
FAN07G2928 Fragaria x ananassa HOM05D006987 ORTHO05D000525 1.2e-10 72.4 153 28.8
Atru.chr4.1579 Acer truncatum HOM05D006987 ORTHO05D000525 3.4e-10 70.9 186 28.0
Glyma.18G194300 Glycine max HOM05D000886 ORTHO05D000525 4.4e-10 70.5 154 29.2
Oeu034321.1 Olea europaea HOM05D006987 ORTHO05D000525 9.8e-10 69.3 154 27.9
FAN17G1408 Fragaria x ananassa HOM05D006987 ORTHO05D000525 1.3e-09 68.9 129 31.8
Mapoly0001s0405 Marchantia polymorpha HOM05D000886 ORTHO05D000525 2.2e-09 68.2 173 28.9
Manes.08G161704 Manihot esculenta HOM05D000886 ORTHO05D000525 3.7e-09 67.4 183 27.3
Phvul.002G068500 Phaseolus vulgaris HOM05D000886 ORTHO05D000525 3.7e-09 67.4 162 27.2
COL.COLO4_20228 Corchorus olitorius HOM05D006987 ORTHO05D000525 6.3e-09 66.6 106 34.0
PSO017G0226 Papaver somniferum HOM05D000886 ORTHO05D000525 6.3e-09 66.6 175 28.6
PSO017G3305 Papaver somniferum HOM05D000886 ORTHO05D000525 6.3e-09 66.6 175 28.6
Atru.chr1.1367 Acer truncatum HOM05D000886 ORTHO05D000525 8.3e-09 66.2 218 24.3
Actinidia35513 Actinidia chinensis HOM05D000886 ORTHO05D000525 1.4e-08 65.5 197 25.9
MD14G1051900 Malus domestica HOM05D000886 ORTHO05D000525 1.4e-08 65.5 190 25.8
Sopen08g003290 Solanum pennellii HOM05D000886 ORTHO05D000525 1.4e-08 65.5 164 31.1
HanXRQChr15g0495511 Helianthus annuus HOM05D000886 ORTHO05D000525 1.8e-08 65.1 201 26.4
CsaV3_3G040060 Cucumis sativus L. HOM05D000886 ORTHO05D000525 2.4e-08 64.7 213 27.2
Glyma.07G143200 Glycine max HOM05D000886 ORTHO05D000525 3.1e-08 64.3 235 27.7
Os04g0225100 Oryza sativa ssp. japonica HOM05D000886 ORTHO05D000525 4.1e-08 63.9 191 27.2
Sabra06G0021000 Salix brachista HOM05D000886 ORTHO05D000525 4.1e-08 63.9 215 27.0
PGSC0003DMG400012475 Solanum tuberosum HOM05D000886 ORTHO05D000525 4.1e-08 63.9 164 29.9
AagrBONN_evm.TU.Sc2ySwM_228.5396 Anthoceros agrestis HOM05D000886 ORTHO05D000525 5.4e-08 63.5 201 26.9
Cre10.g451300 Chlamydomonas reinhardtii HOM05D002024 ORTHO05D007288 5.4e-08 63.5 187 28.9
MBI18_g30011_MAGBIO Magnolia biondii HOM05D006987 ORTHO05D000525 5.4e-08 63.5 125 32.0
PGSC0003DMG400012504 Solanum tuberosum HOM05D000886 ORTHO05D000525 9.1e-08 62.8 164 29.3
Glyma.07G143700 Glycine max HOM05D000886 ORTHO05D000525 1.2e-07 62.4 155 28.4
Solyc08g007350.2 Solanum lycopersicum HOM05D000886 ORTHO05D000525 1.2e-07 62.4 164 30.5
TAR365G0209 Trochodendron aralioides HOM05D000886 ORTHO05D000525 1.6e-07 62.0 192 25.0
unitig_0.g739 Utricularia gibba HOM05D000527 ORTHO05D000559 1.6e-07 62.0 96 35.4
Lsat_1_v5_gn_9_55760 Lactuca sativa HOM05D000886 ORTHO05D000525 2.0e-07 61.6 205 26.3
PGSC0003DMG400014043 Solanum tuberosum HOM05D000886 ORTHO05D000525 2.0e-07 61.6 164 29.3
SGA_v2.0_scaffold37G14598 Striga asiatica HOM05D000886 ORTHO05D000525 2.0e-07 61.6 197 25.9
Cfa016274 Carpinus fangiana HOM05D000886 ORTHO05D000525 2.7e-07 61.2 172 28.5
PGSC0003DMG400043674 Solanum tuberosum HOM05D000886 ORTHO05D000525 2.7e-07 61.2 162 27.8
Potri.006G031400 Populus trichocarpa HOM05D000886 ORTHO05D000525 4.5e-07 60.5 215 25.6
QL07p013665 Quercus lobata HOM05D000886 ORTHO05D000525 4.5e-07 60.5 183 28.4
TAR636G3206 Trochodendron aralioides HOM05D000886 ORTHO05D000525 4.5e-07 60.5 212 25.0
Lj6g0009916 Lotus japonicus HOM05D000886 ORTHO05D000525 5.9e-07 60.1 157 27.4
Os01g0660800 Oryza sativa ssp. japonica HOM05D000886 ORTHO05D000525 5.9e-07 60.1 190 27.4
Pp3c16_24370 Physcomitrium patens HOM05D000886 ORTHO05D000525 5.9e-07 60.1 190 26.3
SHI02776 Sapria himalayana HOM05D000002 ORTHO05D000001 5.9e-07 60.1 195 28.7
CiPaw.01G083200 Carya illinoinensis HOM05D000886 ORTHO05D000525 7.7e-07 59.7 158 28.5
Migut.A01095 Erythranthe guttata HOM05D000886 ORTHO05D000525 1.0e-06 59.3 196 25.0
Nitab4.5_0001338g0050 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.0e-06 59.3 158 27.8
Nitab4.5_0004525g0050 Nicotiana tabacum HOM05D000886 ORTHO05D000525 1.0e-06 59.3 158 28.5
Os01g0737600 Oryza sativa ssp. japonica HOM05D000886 ORTHO05D000525 1.0e-06 59.3 162 29.6
PGSC0003DMG400043401 Solanum tuberosum HOM05D000886 ORTHO05D000525 1.3e-06 58.9 153 27.5
CAN.G220.19 Capsicum annuum HOM05D000886 ORTHO05D000525 1.7e-06 58.5 161 27.3
CAN.G220.20 Capsicum annuum HOM05D000886 ORTHO05D000525 1.7e-06 58.5 161 28.0
CAN.G220.21 Capsicum annuum HOM05D000886 ORTHO05D000525 1.7e-06 58.5 161 27.3
Lalb_Chr01g0016721 Lupinus albus HOM05D000886 ORTHO05D000525 1.7e-06 58.5 220 25.5
Sopen11g002370 Solanum pennellii HOM05D000886 ORTHO05D000525 1.7e-06 58.5 162 26.5
Sopen01g044180 Solanum pennellii HOM05D000886 ORTHO05D000525 2.2e-06 58.2 158 28.5
Thecc.01G317300 Theobroma cacao HOM05D000886 ORTHO05D000525 2.2e-06 58.2 163 26.4
CSS0029635 Camellia sinensis var. sinensis HOM05D000886 ORTHO05D000525 2.9e-06 57.8 166 28.3
Cc00_g29270 Coffea canephora HOM05D000886 ORTHO05D000525 3.8e-06 57.4 166 26.5
HanXRQChr15g0495501 Helianthus annuus HOM05D000886 ORTHO05D000525 3.8e-06 57.4 194 26.3
Phvul.008G109700 Phaseolus vulgaris HOM05D000886 ORTHO05D000525 3.8e-06 57.4 154 27.9
TPR.G1559 Trifolium pratense HOM05D000886 ORTHO05D000525 3.8e-06 57.4 183 25.7
AagrBONN_evm.TU.Sc2ySwM_344.2831 Anthoceros agrestis HOM05D000886 ORTHO05D000525 5.0e-06 57.0 162 25.3
Oeu053737.1 Olea europaea HOM05D000886 ORTHO05D000525 5.0e-06 57.0 158 27.8
SalBow3G0713 Salvia bowleyana HOM05D000886 ORTHO05D000525 5.0e-06 57.0 199 24.6
Solyc08g078620.1 Solanum lycopersicum HOM05D000886 ORTHO05D000525 5.0e-06 57.0 201 24.9
Zm00001eb359560 Zea mays HOM05D000886 ORTHO05D000525 5.0e-06 57.0 161 30.4
PGSC0003DMG400006389 Solanum tuberosum HOM05D000886 ORTHO05D000525 6.5e-06 56.6 155 28.4
AagrBONN_evm.TU.Sc2ySwM_228.5403 Anthoceros agrestis HOM05D000886 ORTHO05D000525 8.5e-06 56.2 198 24.2
Ciclev10006543m.g Citrus clementina HOM05D000886 ORTHO05D000525 8.5e-06 56.2 189 23.3
COL.COLO4_16809 Corchorus olitorius HOM05D006088 ORTHO05D007281 8.5e-06 56.2 187 28.9
ECA232G0102 Erigeron canadensis HOM05D000886 ORTHO05D000525 8.5e-06 56.2 214 23.8
ECA232G0318 Erigeron canadensis HOM05D000886 ORTHO05D000525 8.5e-06 56.2 185 25.9
VMungo1215G1853 Vigna mungo HOM05D002953 ORTHO05D003249 8.5e-06 56.2 163 24.5


User provided reference genes

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