Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO02G416 Micromonas commoda HOM05D002268 ORTHO05D006937 3.9e-287 990.7 479 100.0
Lsat_1_v5_gn_2_97721 Lactuca sativa HOM05D002268 ORTHO05D006937 4.3e-121 439.1 444 51.4
HanXRQChr07g0197481 Helianthus annuus HOM05D002268 ORTHO05D006937 2.1e-120 436.8 445 51.5
Phvul.011G059600 Phaseolus vulgaris HOM05D002268 ORTHO05D006937 6.2e-120 435.3 436 52.3
Nitab4.5_0006994g0060 Nicotiana tabacum HOM05D002268 ORTHO05D006937 1.4e-119 434.1 434 51.8
PGR102G0832 Punica granatum HOM05D002268 ORTHO05D006937 2.4e-119 433.3 442 50.7
Nitab4.5_0005819g0070 Nicotiana tabacum HOM05D002268 ORTHO05D006937 3.1e-119 433.0 445 51.2
Solyc09g074100.4 Solanum lycopersicum HOM05D002268 ORTHO05D006937 4.0e-119 432.6 445 51.2
Ah.04g161910 Amaranthus hybridus HOM05D002268 ORTHO05D006937 5.3e-119 432.2 439 51.0
Sopen09g028920 Solanum pennellii HOM05D002268 ORTHO05D006937 5.3e-119 432.2 445 51.5
CAN.G956.10 Capsicum annuum HOM05D002268 ORTHO05D006937 9.0e-119 431.4 434 51.4
PRCOL_00001138 Prasinoderma coloniale HOM05D002268 ORTHO05D006937 1.2e-118 431.0 432 52.1
Glyma.11G133500 Glycine max HOM05D002268 ORTHO05D006937 7.6e-118 428.3 435 51.0
Ca_11284_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 1.3e-117 427.6 436 50.9
Ca_30227_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006937 1.3e-117 427.6 436 50.9
PGSC0003DMG400003844 Solanum tuberosum HOM05D002268 ORTHO05D006937 1.3e-117 427.6 445 50.3
VMungo1127G0743 Vigna mungo HOM05D002268 ORTHO05D006937 1.3e-117 427.6 436 51.6
Lalb_Chr19g0138111 Lupinus albus HOM05D002268 ORTHO05D006937 1.7e-117 427.2 436 51.6
Medtr4g065023 Medicago truncatula HOM05D002268 ORTHO05D006937 2.9e-117 426.4 437 50.8
AUR62019294 Chenopodium quinoa HOM05D002268 ORTHO05D006937 6.5e-117 425.2 438 49.5
EL10Ac4g10259 Beta vulgaris HOM05D002268 ORTHO05D006937 1.9e-116 423.7 438 50.0
EL10Ac4g10275 Beta vulgaris HOM05D002268 ORTHO05D006937 1.9e-116 423.7 438 50.0
Aa31LG10G3500 Aethionema arabicum HOM05D002268 ORTHO05D006937 2.5e-116 423.3 433 49.9
Eucgr.B03681 Eucalyptus grandis HOM05D002268 ORTHO05D006937 3.2e-116 422.9 438 49.5
CiPaw.14G119300 Carya illinoinensis HOM05D002268 ORTHO05D006937 5.5e-116 422.2 437 49.9
Cc09_g04150 Coffea canephora HOM05D002268 ORTHO05D006937 5.5e-116 422.2 436 50.5
DCAR_000723 Daucus carota HOM05D002268 ORTHO05D006937 5.5e-116 422.2 437 50.8
Psat7g212760 Pisum sativum HOM05D002268 ORTHO05D006937 5.5e-116 422.2 435 51.0
Haze_23130 Corylus avellana HOM05D002268 ORTHO05D006937 7.1e-116 421.8 437 50.8
Rhsim01G0191500 Rhododendron simsii HOM05D002268 ORTHO05D006937 7.1e-116 421.8 437 50.8
Actinidia06337 Actinidia chinensis HOM05D002268 ORTHO05D006937 1.6e-115 420.6 455 48.8
HPP92_009580 Vanilla planifolia HOM05D002268 ORTHO05D006937 2.1e-115 420.2 438 49.5
BcaC01g01260 Brassica carinata HOM05D002268 ORTHO05D006937 3.5e-115 419.5 433 49.9
Nn7g36125 Nelumbo nucifera HOM05D002268 ORTHO05D006937 3.5e-115 419.5 438 49.8
Carub.0001s4017 Capsella rubella HOM05D002268 ORTHO05D006937 4.6e-115 419.1 433 49.9
A08p02940 Brassica napus HOM05D002268 ORTHO05D006937 6.0e-115 418.7 433 49.7
Migut.N02313 Erythranthe guttata HOM05D002268 ORTHO05D006937 6.0e-115 418.7 436 49.5
Sp1g37990 Schrenkiella parvula HOM05D002268 ORTHO05D006937 7.9e-115 418.3 433 49.2
Atru.chr3.2733 Acer truncatum HOM05D002268 ORTHO05D006937 1.3e-114 417.5 435 50.8
Hma1.2p1_0861F.1_g229700 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 1.3e-114 417.5 436 50.9
AL1G59110 Arabidopsis lyrata HOM05D002268 ORTHO05D006937 1.8e-114 417.2 433 49.7
BraA08t32327Z Brassica rapa HOM05D002268 ORTHO05D006937 1.8e-114 417.2 433 49.4
C03p89920 Brassica napus HOM05D002268 ORTHO05D006937 2.3e-114 416.8 433 49.4
BolC3t21311H Brassica oleracea HOM05D002268 ORTHO05D006937 2.3e-114 416.8 433 49.4
CARHR041380 Cardamine hirsuta HOM05D002268 ORTHO05D006937 2.3e-114 416.8 433 50.1
CsaV3_4G024220 Cucumis sativus L. HOM05D002268 ORTHO05D006937 2.3e-114 416.8 435 50.6
Cpa.g.sc84.62 Carica papaya HOM05D002268 ORTHO05D006937 3.0e-114 416.4 437 48.7
Thhalv10011432m.g Eutrema salsugineum HOM05D002268 ORTHO05D006937 3.0e-114 416.4 433 49.9
Lj3g0006923 Lotus japonicus HOM05D002268 ORTHO05D006937 3.0e-114 416.4 438 50.2
COL.COLO4_24897 Corchorus olitorius HOM05D002268 ORTHO05D006937 3.9e-114 416.0 437 49.7
Sc16g0011510 Simmondsia chinensis HOM05D002268 ORTHO05D006937 3.9e-114 416.0 437 49.9
GSVIVG01025274001 Vitis vinifera HOM05D002268 ORTHO05D006937 3.9e-114 416.0 437 50.3
ECA238G2081 Erigeron canadensis HOM05D002268 ORTHO05D006937 6.7e-114 415.2 437 50.1
Potri.001G259000 Populus trichocarpa HOM05D002268 ORTHO05D006937 8.7e-114 414.8 437 49.0
SalBow5G0100 Salvia bowleyana HOM05D002268 ORTHO05D006937 8.7e-114 414.8 468 46.8
arahy.Tifrunner.gnm1.ann1.8VL3CN Arachis hypogaea HOM05D002268 ORTHO05D006937 1.1e-113 414.5 437 49.9
MELO3C014598.2 Cucumis melo HOM05D002268 ORTHO05D006937 1.5e-113 414.1 435 50.1
arahy.Tifrunner.gnm1.ann1.02894U Arachis hypogaea HOM05D002268 ORTHO05D006937 1.9e-113 413.7 437 49.7
Carub.0008s0647 Capsella rubella HOM05D002268 ORTHO05D006937 1.9e-113 413.7 433 49.2
PSO384G3396 Papaver somniferum HOM05D002268 ORTHO05D006937 1.9e-113 413.7 438 50.0
AT1G51310 Arabidopsis thaliana HOM05D002268 ORTHO05D006937 2.5e-113 413.3 433 49.4
PSO339G2995 Papaver somniferum HOM05D002268 ORTHO05D006937 2.5e-113 413.3 438 50.2
TWI60G0297 Tripterygium wilfordii HOM05D002268 ORTHO05D006937 2.5e-113 413.3 437 49.2
Lj2A631G13 Lonicera japonica HOM05D002268 ORTHO05D006937 3.3e-113 412.9 440 49.3
Mapoly0129s0019 Marchantia polymorpha HOM05D002268 ORTHO05D006937 4.3e-113 412.5 443 47.4
Oeu043297.4 Olea europaea HOM05D002268 ORTHO05D006937 5.7e-113 412.1 457 47.5
QL01p004788 Quercus lobata HOM05D002268 ORTHO05D006937 7.4e-113 411.8 438 49.5
vmacro19340 Vaccinium macrocarpon HOM05D002268 ORTHO05D006937 9.6e-113 411.4 436 49.8
arahy.Tifrunner.gnm1.ann1.VSBS4R Arachis hypogaea HOM05D002268 ORTHO05D006937 2.8e-112 409.8 437 49.4
Zm00001eb005670 Zea mays HOM05D002268 ORTHO05D006937 4.8e-112 409.1 441 48.5
BcaB02g11231 Brassica carinata HOM05D002268 ORTHO05D006937 1.1e-111 407.9 435 48.5
Duzib168G2040 Durio zibethinus HOM05D002268 ORTHO05D006937 1.1e-111 407.9 437 49.4
Sed0017829 Sechium edule HOM05D002268 ORTHO05D006937 1.1e-111 407.9 435 50.1
Aqoxy1G00300 Aquilegia oxysepala HOM05D002268 ORTHO05D006937 1.4e-111 407.5 438 49.3
Prupe.5G028600 Prunus persica HOM05D002268 ORTHO05D006937 1.4e-111 407.5 437 49.7
arahy.Tifrunner.gnm1.ann1.6XYC84 Arachis hypogaea HOM05D002268 ORTHO05D006937 1.8e-111 407.1 445 49.0
AUR62000114 Chenopodium quinoa HOM05D002268 ORTHO05D006937 1.8e-111 407.1 438 50.5
Gorai.009G073000 Gossypium raimondii HOM05D002268 ORTHO05D006937 1.8e-111 407.1 438 49.1
arahy.Tifrunner.gnm1.ann1.AYE0CN Arachis hypogaea HOM05D002268 ORTHO05D006937 5.3e-111 405.6 437 48.7
Pp3c15_1840 Physcomitrium patens HOM05D002268 ORTHO05D006937 6.9e-111 405.2 459 46.2
Os03g0174600 Oryza sativa ssp. japonica HOM05D002268 ORTHO05D006937 1.2e-110 404.4 442 48.0
ATR0605G089 Amborella trichopoda HOM05D002268 ORTHO05D006937 1.5e-110 404.1 434 48.4
Gohir.D05G072000 Gossypium hirsutum HOM05D002268 ORTHO05D006937 1.5e-110 404.1 438 48.9
A05p19700 Brassica napus HOM05D002268 ORTHO05D006937 3.4e-110 402.9 433 48.5
MD11G1196700 Malus domestica HOM05D002268 ORTHO05D006937 2.9e-109 399.8 442 48.4
ClCG02G023280 Citrullus lanatus HOM05D002268 ORTHO05D006937 1.9e-108 397.1 457 47.5
MD03G1176400 Malus domestica HOM05D002268 ORTHO05D006937 2.5e-108 396.7 437 48.5
MBI04_g17077_MAGBIO Magnolia biondii HOM05D002268 ORTHO05D006937 1.6e-107 394.0 435 47.6
TPR.G35035 Trifolium pratense HOM05D002268 ORTHO05D006937 2.1e-107 393.7 446 47.8
AagrBONN_evm.TU.Sc2ySwM_340.361 Anthoceros agrestis HOM05D002268 ORTHO05D006937 4.6e-107 392.5 437 48.1
FvH4_5g33050 Fragaria vesca HOM05D002268 ORTHO05D006937 6.7e-106 388.7 437 47.8
FAN18G3947 Fragaria x ananassa HOM05D002268 ORTHO05D006937 8.7e-106 388.3 437 48.3
Cre14.g628000 Chlamydomonas reinhardtii HOM05D002268 ORTHO05D006937 1.5e-105 387.5 558 42.3
SMO331G0070 Selaginella moellendorffii HOM05D002268 ORTHO05D006937 7.4e-105 385.2 446 45.5
RcHm_v2.0_Chr7g0231131 Rosa chinensis HOM05D002268 ORTHO05D006937 1.4e-103 380.9 437 47.1
Thecc.09G232700 Theobroma cacao HOM05D002268 ORTHO05D006937 1.3e-101 374.4 316 58.2
SGA_v2.0_scaffold42G16104 Striga asiatica HOM05D002268 ORTHO05D006937 1.7e-101 374.0 437 46.0
Sabra16G0158600 Salix brachista HOM05D002268 ORTHO05D006937 3.2e-100 369.8 437 45.5
Manes.06G165000 Manihot esculenta HOM05D002268 ORTHO05D006937 5.1e-98 362.5 438 46.1
Lsat_1_v5_gn_2_132680 Lactuca sativa HOM05D002268 ORTHO05D006937 1.1e-97 361.3 447 46.3
CDE04G2511 Ceratophyllum demersum HOM05D002268 ORTHO05D006937 2.5e-97 360.1 438 46.8
CSS0013347 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 1.3e-96 357.8 398 47.7
Hund22033 Selenicereus undatus HOM05D002268 ORTHO05D006937 4.8e-96 355.9 535 41.7
BcaC05g27353 Brassica carinata HOM05D002268 ORTHO05D006937 1.7e-93 347.4 394 45.7
BolC5t32017H Brassica oleracea HOM05D002268 ORTHO05D006937 1.6e-91 340.9 459 41.8
C05p32860 Brassica napus HOM05D002268 ORTHO05D006937 2.3e-90 337.0 459 41.6
Hma1.2p1_0861F.1_g229710 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 5.1e-90 335.9 281 59.1
Dinv22182 Davidia involucrata HOM05D002268 ORTHO05D006937 4.4e-89 332.8 274 59.5
CBR_g40742 Chara braunii HOM05D002268 ORTHO05D006937 2.2e-80 303.9 427 42.6
SEGI_13867 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 3.1e-79 300.1 382 41.9
Glyma.12G057700 Glycine max HOM05D002268 ORTHO05D006937 3.5e-78 296.6 258 57.8
AagrBONN_evm.TU.Sc2ySwM_368.606 Anthoceros agrestis HOM05D002268 ORTHO05D006937 1.1e-76 291.6 436 39.0
FAN08G3580 Fragaria x ananassa HOM05D002268 ORTHO05D006937 4.2e-76 289.7 274 54.0
CSS0030827 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 1.7e-72 277.7 469 38.0
FAN04G1610 Fragaria x ananassa HOM05D002268 ORTHO05D006937 1.9e-68 264.2 275 50.9
Peaxi162Scf00004g00224 Petunia axillaris HOM05D002268 ORTHO05D006937 1.0e-66 258.5 267 48.3
TAR369G0718 Trochodendron aralioides HOM05D002268 ORTHO05D006937 2.2e-64 250.8 279 46.6
Ciclev10006706m.g Citrus clementina HOM05D002268 ORTHO05D006937 5.9e-62 242.7 463 38.7
CBR_g19922 Chara braunii HOM05D002268 ORTHO05D021278 4.6e-54 216.5 333 36.6
Actinidia26439 Actinidia chinensis HOM05D002268 ORTHO05D006937 6.6e-53 212.6 254 45.3
Gohir.A05G069100 Gossypium hirsutum HOM05D002268 ORTHO05D006937 2.6e-49 200.7 214 50.5
Pp3c4_6690 Physcomitrium patens HOM05D002268 ORTHO05D021278 4.4e-49 199.9 433 32.6
Mapoly0010s0199 Marchantia polymorpha HOM05D002268 ORTHO05D021278 8.6e-45 185.7 333 34.2
AagrBONN_evm.TU.Sc2ySwM_117.3752 Anthoceros agrestis HOM05D002268 ORTHO05D021278 1.9e-44 184.5 321 34.3
PRCOL_00001597 Prasinoderma coloniale HOM05D002268 ORTHO05D021278 9.5e-44 182.2 449 31.0
unitig_21.g20901 Utricularia gibba HOM05D002268 ORTHO05D006937 6.2e-43 179.5 132 62.9
MCO12G105 Micromonas commoda HOM05D002268 ORTHO05D021278 4.4e-41 173.3 341 33.7
unitig_21.g20902 Utricularia gibba HOM05D002268 ORTHO05D007950 3.0e-37 160.6 206 40.8
BcaB04g17220 Brassica carinata HOM05D002268 ORTHO05D006937 4.7e-35 153.3 207 41.1
CSS0037797 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006937 1.4e-31 141.7 125 53.6
MSTRG.17590 Avicennia marina HOM05D002268 ORTHO05D006937 1.6e-27 128.3 132 50.8
BraA05t20874Z Brassica rapa HOM05D002268 ORTHO05D006937 1.4e-23 115.2 78 69.2
SEGI_07269 Sequoiadendron giganteum HOM05D002268 ORTHO05D006937 3.5e-22 110.5 158 40.5
Lsat_1_v5_gn_1_117501 Lactuca sativa HOM05D002268 ORTHO05D006937 6.6e-21 106.3 97 49.5
C03p89950 Brassica napus HOM05D002268 ORTHO05D001336 3.4e-17 94.0 81 54.3
BolC3t21314H Brassica oleracea HOM05D002268 ORTHO05D006937 3.4e-17 94.0 81 54.3
BcaC01g01262 Brassica carinata HOM05D002268 ORTHO05D006937 2.9e-16 90.9 90 47.8
Hma1.2p1_0861F.1_g229720 Hydrangea macrophylla HOM05D002268 ORTHO05D006937 4.9e-16 90.1 161 36.0
MELO3C029180.2 Cucumis melo HOM05D002268 ORTHO05D168145 1.7e-08 65.1 143 32.9
Duzib150G1137 Durio zibethinus HOM05D002268 ORTHO05D006937 3.8e-08 63.9 36 86.1
A08p02920 Brassica napus HOM05D002268 ORTHO05D099342 4.2e-07 60.5 49 57.1


User provided reference genes

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