Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO02G367 Micromonas commoda HOM05D004653 ORTHO05D006221 1.3e-168 596.3 289 100.0
Hund26999 Selenicereus undatus HOM05D004653 ORTHO05D006221 4.8e-83 312.0 245 60.4
PGR031G0949 Punica granatum HOM05D004653 ORTHO05D006221 6.3e-83 311.6 245 60.8
BcaC01g04840 Brassica carinata HOM05D004653 ORTHO05D006221 8.2e-83 311.2 233 61.8
A03p27590 Brassica napus HOM05D004653 ORTHO05D006221 1.1e-82 310.8 233 61.4
C03p33300 Brassica napus HOM05D004653 ORTHO05D006221 2.4e-82 309.7 233 61.4
BolC3t15652H Brassica oleracea HOM05D004653 ORTHO05D006221 2.4e-82 309.7 233 61.4
Nitab4.5_0024258g0010 Nicotiana tabacum HOM05D004653 ORTHO05D006221 2.4e-82 309.7 242 59.9
SalBow5G1317 Salvia bowleyana HOM05D004653 ORTHO05D006221 4.1e-82 308.9 242 61.6
BraA03t11972Z Brassica rapa HOM05D004653 ORTHO05D006221 6.9e-82 308.1 233 60.9
COL.COLO4_11961 Corchorus olitorius HOM05D004653 ORTHO05D006221 9.1e-82 307.8 242 60.3
Gohir.D05G267700 Gossypium hirsutum HOM05D004653 ORTHO05D006221 9.1e-82 307.8 240 61.2
Phvul.009G037700 Phaseolus vulgaris HOM05D004653 ORTHO05D006221 1.5e-81 307.0 242 61.6
Gorai.009G279800 Gossypium raimondii HOM05D004653 ORTHO05D006221 2.6e-81 306.2 240 60.8
VMungo1309G1466 Vigna mungo HOM05D004653 ORTHO05D006221 2.6e-81 306.2 242 61.2
MSTRG.23086 Avicennia marina HOM05D004653 ORTHO05D006221 4.5e-81 305.4 242 60.3
Migut.I00061 Erythranthe guttata HOM05D004653 ORTHO05D006221 5.9e-81 305.1 242 60.3
Glyma.04G093600 Glycine max HOM05D004653 ORTHO05D006221 7.7e-81 304.7 243 61.3
SGA_v2.0_scaffold25G10868 Striga asiatica HOM05D004653 ORTHO05D006221 7.7e-81 304.7 243 60.1
BcaB01g02929 Brassica carinata HOM05D004653 ORTHO05D006221 1.0e-80 304.3 233 60.9
Lj4C92G16 Lonicera japonica HOM05D004653 ORTHO05D006221 1.0e-80 304.3 242 60.3
THA.LOC104799811 Tarenaya hassleriana HOM05D004653 ORTHO05D006221 1.0e-80 304.3 242 59.9
Thhalv10013217m.g Eutrema salsugineum HOM05D004653 ORTHO05D006221 1.3e-80 303.9 246 60.2
TWI56G0982 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 1.3e-80 303.9 242 59.5
arahy.Tifrunner.gnm1.ann1.QAT0QL Arachis hypogaea HOM05D004653 ORTHO05D006221 2.2e-80 303.1 240 60.8
Potri.002G102600 Populus trichocarpa HOM05D004653 ORTHO05D006221 2.2e-80 303.1 242 59.1
Hma1.2p1_0961F.1_g241730 Hydrangea macrophylla HOM05D004653 ORTHO05D006221 2.9e-80 302.8 242 59.1
TPR.G26053 Trifolium pratense HOM05D004653 ORTHO05D006221 2.9e-80 302.8 243 60.1
AT5G49970 Arabidopsis thaliana HOM05D004653 ORTHO05D006221 3.8e-80 302.4 248 59.7
arahy.Tifrunner.gnm1.ann1.Y1WP0G Arachis hypogaea HOM05D004653 ORTHO05D006221 3.8e-80 302.4 240 60.8
CSS0007986 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 3.8e-80 302.4 242 58.7
CSS0025013 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 3.8e-80 302.4 242 58.7
PGSC0003DMG401024581 Solanum tuberosum HOM05D004653 ORTHO05D006221 3.8e-80 302.4 242 58.3
Actinidia30803 Actinidia chinensis HOM05D004653 ORTHO05D006221 5.0e-80 302.0 244 59.0
CANSAT11G2183 Cannabis sativa HOM05D004653 ORTHO05D006221 5.0e-80 302.0 242 58.7
Nitab4.5_0000642g0300 Nicotiana tabacum HOM05D004653 ORTHO05D006221 5.0e-80 302.0 242 59.1
Sabra02G0080400 Salix brachista HOM05D004653 ORTHO05D006221 5.0e-80 302.0 242 59.9
GSVIVG01009125001 Vitis vinifera HOM05D004653 ORTHO05D006221 5.0e-80 302.0 242 59.9
Solyc03g113780.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 6.5e-80 301.6 242 58.3
ATR0022G001 Amborella trichopoda HOM05D004653 ORTHO05D006221 8.5e-80 301.2 242 59.5
Cpa.g.sc36.204 Carica papaya HOM05D004653 ORTHO05D006221 8.5e-80 301.2 242 58.3
Thecc.08G066400 Theobroma cacao HOM05D004653 ORTHO05D006221 8.5e-80 301.2 242 59.9
AUR62019003 Chenopodium quinoa HOM05D004653 ORTHO05D006221 1.1e-79 300.8 242 59.9
Lj1g0013887 Lotus japonicus HOM05D004653 ORTHO05D006221 1.1e-79 300.8 242 60.3
Pp3c2_19610 Physcomitrium patens HOM05D004653 ORTHO05D006221 1.1e-79 300.8 244 61.5
SMO356G0546 Selaginella moellendorffii HOM05D004653 ORTHO05D006221 1.1e-79 300.8 235 61.3
AUR62027845 Chenopodium quinoa HOM05D004653 ORTHO05D006221 1.4e-79 300.4 242 59.9
Ciclev10000790m.g Citrus clementina HOM05D004653 ORTHO05D006221 1.4e-79 300.4 244 59.8
Sopen03g032830 Solanum pennellii HOM05D004653 ORTHO05D006221 1.4e-79 300.4 242 58.3
Medtr3g100890 Medicago truncatula HOM05D004653 ORTHO05D006221 2.5e-79 299.7 243 59.7
Lalb_Chr23g0270281 Lupinus albus HOM05D004653 ORTHO05D006221 3.2e-79 299.3 242 59.9
Rhsim06G0074900 Rhododendron simsii HOM05D004653 ORTHO05D006221 3.2e-79 299.3 239 59.4
EL10Ac1g01097 Beta vulgaris HOM05D004653 ORTHO05D006221 4.2e-79 298.9 242 57.9
Aa31sc34G110 Aethionema arabicum HOM05D004653 ORTHO05D006221 5.5e-79 298.5 240 58.3
QL09p016947 Quercus lobata HOM05D004653 ORTHO05D006221 7.2e-79 298.1 242 58.3
Lalb_Chr11g0065151 Lupinus albus HOM05D004653 ORTHO05D006221 9.4e-79 297.7 240 60.0
Atru.chr13.1058 Acer truncatum HOM05D004653 ORTHO05D006221 1.2e-78 297.4 242 59.9
Dinv44830 Davidia involucrata HOM05D004653 ORTHO05D006221 1.2e-78 297.4 242 59.1
Sp6g11760 Schrenkiella parvula HOM05D004653 ORTHO05D006221 1.6e-78 297.0 240 59.2
Eucgr.F02123 Eucalyptus grandis HOM05D004653 ORTHO05D006221 2.1e-78 296.6 240 59.2
TWI36G0595 Tripterygium wilfordii HOM05D004653 ORTHO05D006221 2.1e-78 296.6 242 58.3
Aqoxy6G01474 Aquilegia oxysepala HOM05D004653 ORTHO05D006221 2.7e-78 296.2 240 60.0
Carub.0008s0987 Capsella rubella HOM05D004653 ORTHO05D006221 2.7e-78 296.2 247 57.9
Cre08.g378200 Chlamydomonas reinhardtii HOM05D004653 ORTHO05D006221 3.6e-78 295.8 259 56.4
Zm00001eb027880 Zea mays HOM05D004653 ORTHO05D006221 3.6e-78 295.8 240 60.4
AL8G23940 Arabidopsis lyrata HOM05D004653 ORTHO05D006221 4.7e-78 295.4 248 58.1
CSS0037453 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 6.1e-78 295.0 244 57.4
PSO675G8871 Papaver somniferum HOM05D004653 ORTHO05D006221 6.1e-78 295.0 240 58.8
CAN.G853.18 Capsicum annuum HOM05D004653 ORTHO05D006221 7.9e-78 294.7 242 57.0
CiPaw.07G169200 Carya illinoinensis HOM05D004653 ORTHO05D006221 7.9e-78 294.7 242 58.3
DCAR_012873 Daucus carota HOM05D004653 ORTHO05D006221 7.9e-78 294.7 242 58.3
RcHm_v2.0_Chr7g0237681 Rosa chinensis HOM05D004653 ORTHO05D006221 7.9e-78 294.7 242 58.7
Lsat_1_v5_gn_1_2401 Lactuca sativa HOM05D004653 ORTHO05D006221 1.0e-77 294.3 242 58.3
PSO541G1602 Papaver somniferum HOM05D004653 ORTHO05D006221 1.4e-77 293.9 240 59.6
Ciclev10001057m.g Citrus clementina HOM05D004653 ORTHO05D006221 1.8e-77 293.5 244 58.6
Manes.02G147500 Manihot esculenta HOM05D004653 ORTHO05D006221 1.8e-77 293.5 242 58.7
Psat5g045400 Pisum sativum HOM05D004653 ORTHO05D006221 1.8e-77 293.5 242 59.1
TAR376G1013 Trochodendron aralioides HOM05D004653 ORTHO05D006221 1.8e-77 293.5 242 60.3
CARHR258740 Cardamine hirsuta HOM05D004653 ORTHO05D006221 2.3e-77 293.1 249 57.0
MBI06_g18790_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 2.3e-77 293.1 242 59.1
Mapoly0107s0030 Marchantia polymorpha HOM05D004653 ORTHO05D006221 2.3e-77 293.1 242 58.7
Os10g0377800 Oryza sativa ssp. japonica HOM05D004653 ORTHO05D006221 3.9e-77 292.4 239 59.4
Nn1g05497 Nelumbo nucifera HOM05D004653 ORTHO05D006221 5.1e-77 292.0 245 58.4
FAN04G0673 Fragaria x ananassa HOM05D004653 ORTHO05D006221 6.7e-77 291.6 242 58.7
HPP92_004087 Vanilla planifolia HOM05D004653 ORTHO05D006221 6.7e-77 291.6 244 57.0
HPP92_004102 Vanilla planifolia HOM05D004653 ORTHO05D006221 6.7e-77 291.6 244 57.0
MD15G1380600 Malus domestica HOM05D004653 ORTHO05D006221 8.8e-77 291.2 242 58.3
Sed0021217 Sechium edule HOM05D004653 ORTHO05D006221 1.1e-76 290.8 242 57.0
CDE05G0914 Ceratophyllum demersum HOM05D004653 ORTHO05D006221 1.5e-76 290.4 242 57.0
FvH4_5g35940 Fragaria vesca HOM05D004653 ORTHO05D006221 1.5e-76 290.4 242 58.3
FAN18G1441 Fragaria x ananassa HOM05D004653 ORTHO05D006221 1.5e-76 290.4 242 58.3
Cfa013708 Carpinus fangiana HOM05D004653 ORTHO05D006221 2.0e-76 290.0 242 57.4
Haze_22352 Corylus avellana HOM05D004653 ORTHO05D006221 2.0e-76 290.0 242 57.4
ClCG11G014410 Citrullus lanatus HOM05D004653 ORTHO05D006221 2.6e-76 289.7 242 56.6
TAR628G1442 Trochodendron aralioides HOM05D004653 ORTHO05D006221 2.6e-76 289.7 242 57.0
Cc07_g19270 Coffea canephora HOM05D004653 ORTHO05D006221 3.3e-76 289.3 242 56.6
MELO3C003541.2 Cucumis melo HOM05D004653 ORTHO05D006221 3.3e-76 289.3 242 57.0
Oeu042971.1 Olea europaea HOM05D004653 ORTHO05D006221 4.4e-76 288.9 240 59.2
FAN08G1395 Fragaria x ananassa HOM05D004653 ORTHO05D006221 7.4e-76 288.1 242 57.9
FAN13G0646 Fragaria x ananassa HOM05D004653 ORTHO05D006221 7.4e-76 288.1 242 57.9
HanXRQChr02g0047071 Helianthus annuus HOM05D004653 ORTHO05D006221 7.4e-76 288.1 242 57.4
Peaxi162Scf00017g00233 Petunia axillaris HOM05D004653 ORTHO05D006221 9.7e-76 287.7 243 57.2
CsaV3_3G047810 Cucumis sativus L. HOM05D004653 ORTHO05D006221 1.3e-75 287.3 242 57.0
Manes.18G062000 Manihot esculenta HOM05D004653 ORTHO05D006221 1.7e-75 287.0 242 56.2
CAN.G853.20 Capsicum annuum HOM05D004653 ORTHO05D006221 1.1e-74 284.3 248 55.2
Nitab4.5_0007586g0050 Nicotiana tabacum HOM05D004653 ORTHO05D006221 1.4e-74 283.9 245 56.3
ECA247G2604 Erigeron canadensis HOM05D004653 ORTHO05D006221 3.1e-74 282.7 241 55.6
Prupe.1G526800 Prunus persica HOM05D004653 ORTHO05D006221 4.1e-74 282.3 242 56.2
MD08G1191800 Malus domestica HOM05D004653 ORTHO05D006221 5.3e-74 282.0 240 57.5
Ca_15984_v3 Cicer arietinum L. HOM05D004653 ORTHO05D006221 7.0e-74 281.6 242 58.7
AagrBONN_evm.TU.Sc2ySwM_368.1227 Anthoceros agrestis HOM05D004653 ORTHO05D006221 1.2e-73 280.8 233 58.4
MSTRG.23084 Avicennia marina HOM05D004653 ORTHO05D006221 1.2e-73 280.8 242 56.6
SGA_v2.0_scaffold467G52033 Striga asiatica HOM05D004653 ORTHO05D006221 5.9e-73 278.5 241 55.6
Solyc03g113770.3 Solanum lycopersicum HOM05D004653 ORTHO05D006221 2.2e-72 276.6 242 55.8
Sopen03g032820 Solanum pennellii HOM05D004653 ORTHO05D006221 2.2e-72 276.6 242 55.8
Oeu042973.1 Olea europaea HOM05D004653 ORTHO05D006221 6.5e-72 275.0 224 59.8
Cc04_g13590 Coffea canephora HOM05D004653 ORTHO05D006221 3.2e-71 272.7 220 58.6
Gohir.A05G265600 Gossypium hirsutum HOM05D004653 ORTHO05D006221 4.7e-70 268.9 233 55.4
Migut.I00062 Erythranthe guttata HOM05D004653 ORTHO05D006221 8.0e-70 268.1 240 53.8
Sc01g0000970 Simmondsia chinensis HOM05D004653 ORTHO05D006221 1.7e-67 260.4 199 60.3
SalBow5G2478 Salvia bowleyana HOM05D004653 ORTHO05D006221 3.7e-67 259.2 240 52.5
Sc01g0000980 Simmondsia chinensis HOM05D004653 ORTHO05D006221 2.4e-66 256.5 199 59.8
MBI02_g18292_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 3.1e-66 256.1 243 54.3
unitig_26.g9628 Utricularia gibba HOM05D004653 ORTHO05D006221 2.0e-65 253.4 238 53.4
vmacro22331 Vaccinium macrocarpon HOM05D004653 ORTHO05D006221 2.6e-65 253.1 346 40.5
Lalb_Chr23g0270171 Lupinus albus HOM05D004653 ORTHO05D006221 1.1e-63 247.7 198 60.1
Glyma.06G095500 Glycine max HOM05D004653 ORTHO05D006221 2.8e-59 233.0 200 59.5
CSS0017284 Camellia sinensis var. sinensis HOM05D004653 ORTHO05D006221 4.1e-50 202.6 201 48.3
CBR_g24313 Chara braunii HOM05D004653 ORTHO05D006221 4.5e-49 199.1 164 59.1
Duzib116G0761 Durio zibethinus HOM05D004653 ORTHO05D006221 3.2e-42 176.4 136 61.0
Oeu018527.2 Olea europaea HOM05D004653 ORTHO05D006221 4.3e-39 166.0 242 41.7
PGSC0003DMG400024580 Solanum tuberosum HOM05D004653 ORTHO05D006221 2.1e-38 163.7 170 46.5
MBI17_g06166_MAGBIO Magnolia biondii HOM05D004653 ORTHO05D006221 4.7e-38 162.5 209 43.1
Actinidia10360 Actinidia chinensis HOM05D004653 ORTHO05D006221 4.4e-36 156.0 136 59.6
Cc06_g21090 Coffea canephora HOM05D004653 ORTHO05D006221 2.3e-29 133.7 94 64.9
SEGI_12419 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 5.8e-28 129.0 92 62.0
SEGI_17033 Sequoiadendron giganteum HOM05D004653 ORTHO05D006221 1.1e-26 124.8 108 51.9
Dinv42645 Davidia involucrata HOM05D004653 ORTHO05D006221 9.9e-20 101.7 158 38.0
CBR_g24311 Chara braunii HOM05D000019 ORTHO05D000353 2.0e-12 77.4 53 62.3
PRCOL_00006962 Prasinoderma coloniale HOM05D004653 ORTHO05D006221 3.8e-11 73.2 56 55.4
Lalb_Chr23g0270181 Lupinus albus HOM05D004653 ORTHO05D019566 4.3e-07 59.7 59 52.5


User provided reference genes

Program Settings