Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO02G192 Micromonas commoda HOM05D003463 ORTHO05D004206 2.8e-168 595.1 284 100.0
CDE05G3394 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 6.7e-21 105.5 238 29.8
Pp3c11_18840 Physcomitrium patens HOM05D003463 ORTHO05D004206 8.8e-21 105.1 245 30.2
ATR0804G005 Amborella trichopoda HOM05D003463 ORTHO05D004206 1.5e-20 104.4 273 27.1
Lj3g0021154 Lotus japonicus HOM05D003463 ORTHO05D004206 1.5e-20 104.4 236 28.4
Pp3c7_5920 Physcomitrium patens HOM05D003463 ORTHO05D004206 4.3e-20 102.8 245 29.8
Pp3c7_5929 Physcomitrium patens HOM05D003463 ORTHO05D004206 4.3e-20 102.8 245 29.8
SEGI_02831 Sequoiadendron giganteum HOM05D003463 ORTHO05D004206 1.3e-19 101.3 238 29.0
AT4G15180 Arabidopsis thaliana HOM05D003463 ORTHO05D004206 1.1e-18 98.2 277 24.9
CARHR221910 Cardamine hirsuta HOM05D003463 ORTHO05D004206 1.4e-18 97.8 277 25.3
AL7G40500 Arabidopsis lyrata HOM05D003463 ORTHO05D004206 2.4e-18 97.1 277 24.5
Rhsim06G0155700 Rhododendron simsii HOM05D003463 ORTHO05D004206 3.1e-18 96.7 275 26.9
CDE11G1115 Ceratophyllum demersum HOM05D003463 ORTHO05D004206 6.9e-18 95.5 237 28.3
Nn1g06924 Nelumbo nucifera HOM05D003463 ORTHO05D004206 9.1e-18 95.1 237 27.4
Glyma.06G301900 Glycine max HOM05D003463 ORTHO05D004206 1.2e-17 94.7 236 26.7
Aa31LG8G8660 Aethionema arabicum HOM05D003463 ORTHO05D004206 2.0e-17 94.0 280 25.0
Atru.chr6.3118 Acer truncatum HOM05D003463 ORTHO05D004206 2.6e-17 93.6 238 27.7
Thhalv10024183m.g Eutrema salsugineum HOM05D003463 ORTHO05D004206 2.6e-17 93.6 277 24.5
Potri.017G041100 Populus trichocarpa HOM05D003463 ORTHO05D004206 2.6e-17 93.6 238 26.1
TAR627G0487 Trochodendron aralioides HOM05D003463 ORTHO05D004206 2.6e-17 93.6 244 26.6
Glyma.12G102400 Glycine max HOM05D003463 ORTHO05D004206 4.5e-17 92.8 236 26.3
Sabra17G0027900 Salix brachista HOM05D003463 ORTHO05D004206 4.5e-17 92.8 238 26.5
CSS0019318 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 5.9e-17 92.4 238 26.5
Mapoly0021s0105 Marchantia polymorpha HOM05D003463 ORTHO05D004206 5.9e-17 92.4 248 29.0
TWI18G0507 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 5.9e-17 92.4 242 26.4
CSS0043747 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 7.7e-17 92.0 237 27.8
Lalb_Chr19g0135651 Lupinus albus HOM05D003463 ORTHO05D004206 1.0e-16 91.7 235 27.7
Sp7g13400 Schrenkiella parvula HOM05D003463 ORTHO05D004206 1.0e-16 91.7 277 24.2
Ciclev10014009m.g Citrus clementina HOM05D003463 ORTHO05D004206 1.3e-16 91.3 234 26.5
Oeu035823.1 Olea europaea HOM05D003463 ORTHO05D004206 1.7e-16 90.9 238 25.2
Potri.007G119300 Populus trichocarpa HOM05D003463 ORTHO05D004206 1.7e-16 90.9 238 26.1
CBR_g54148 Chara braunii HOM05D003463 ORTHO05D004206 2.9e-16 90.1 280 26.1
HanXRQChr17g0563751 Helianthus annuus HOM05D003463 ORTHO05D004206 2.9e-16 90.1 238 25.6
BcaNung00300 Brassica carinata HOM05D003463 ORTHO05D004206 3.8e-16 89.7 277 23.5
A01p22340 Brassica napus HOM05D003463 ORTHO05D004206 3.8e-16 89.7 277 23.5
BraA01t02149Z Brassica rapa HOM05D003463 ORTHO05D004206 3.8e-16 89.7 277 23.5
RcHm_v2.0_Chr2g0160501 Rosa chinensis HOM05D003463 ORTHO05D004206 3.8e-16 89.7 234 26.9
Medtr4g045743 Medicago truncatula HOM05D003463 ORTHO05D004206 5.0e-16 89.4 236 26.3
Nitab4.5_0003429g0030 Nicotiana tabacum HOM05D003463 ORTHO05D004206 5.0e-16 89.4 238 27.3
vmacro12241 Vaccinium macrocarpon HOM05D003463 ORTHO05D004206 5.0e-16 89.4 275 25.8
MD09G1103200 Malus domestica HOM05D003463 ORTHO05D004206 6.5e-16 89.0 241 28.2
TWI36G1584 Tripterygium wilfordii HOM05D003463 ORTHO05D004206 6.5e-16 89.0 242 26.4
Aqoxy4G01913 Aquilegia oxysepala HOM05D003463 ORTHO05D004206 8.5e-16 88.6 236 25.8
CANSAT64G0087 Cannabis sativa HOM05D003463 ORTHO05D004206 8.5e-16 88.6 237 27.0
CiPaw.03G164300 Carya illinoinensis HOM05D003463 ORTHO05D004206 8.5e-16 88.6 236 26.3
Glyma.12G196800 Glycine max HOM05D003463 ORTHO05D004206 8.5e-16 88.6 235 27.2
Manes.13G074400 Manihot esculenta HOM05D003463 ORTHO05D004206 8.5e-16 88.6 237 26.6
Actinidia12489 Actinidia chinensis HOM05D003463 ORTHO05D004206 1.1e-15 88.2 280 25.7
Nitab4.5_0001134g0130 Nicotiana tabacum HOM05D003463 ORTHO05D004206 1.1e-15 88.2 236 25.8
BcaC09g50202 Brassica carinata HOM05D003463 ORTHO05D004206 1.4e-15 87.8 277 23.5
Cc05_g05330 Coffea canephora HOM05D003463 ORTHO05D004206 1.4e-15 87.8 242 25.6
Lalb_Chr14g0375591 Lupinus albus HOM05D003463 ORTHO05D004206 1.4e-15 87.8 234 26.5
Peaxi162Scf00007g01417 Petunia axillaris HOM05D003463 ORTHO05D004206 1.4e-15 87.8 236 26.3
Sc21g0001820 Simmondsia chinensis HOM05D003463 ORTHO05D004206 1.4e-15 87.8 237 25.3
TPR.G19054 Trifolium pratense HOM05D003463 ORTHO05D004206 1.4e-15 87.8 236 25.0
BcaB02g07835 Brassica carinata HOM05D003463 ORTHO05D004206 1.9e-15 87.4 277 24.2
TAR629G1280 Trochodendron aralioides HOM05D003463 ORTHO05D004206 1.9e-15 87.4 236 27.1
A05p17060 Brassica napus HOM05D003463 ORTHO05D004206 2.5e-15 87.0 277 24.2
C01p27890 Brassica napus HOM05D003463 ORTHO05D004206 2.5e-15 87.0 277 23.1
BolC1t02722H Brassica oleracea HOM05D003463 ORTHO05D004206 2.5e-15 87.0 277 23.1
BraA05t20607Z Brassica rapa HOM05D003463 ORTHO05D004206 2.5e-15 87.0 277 24.2
COL.COLO4_13026 Corchorus olitorius HOM05D003463 ORTHO05D004206 2.5e-15 87.0 274 24.8
Dinv18548 Davidia involucrata HOM05D003463 ORTHO05D004206 2.5e-15 87.0 236 26.7
Hma1.2p1_1378F.1_g279185 Hydrangea macrophylla HOM05D003463 ORTHO05D004206 2.5e-15 87.0 236 25.8
Lsat_1_v5_gn_8_129901 Lactuca sativa HOM05D003463 ORTHO05D004206 2.5e-15 87.0 238 24.8
MD17G1091000 Malus domestica HOM05D003463 ORTHO05D004206 2.5e-15 87.0 234 28.2
PGR042G2093 Punica granatum HOM05D003463 ORTHO05D004206 2.5e-15 87.0 245 25.3
Solyc07g052940.4 Solanum lycopersicum HOM05D003463 ORTHO05D004206 4.2e-15 86.3 236 25.8
Sopen07g026490 Solanum pennellii HOM05D003463 ORTHO05D004206 4.2e-15 86.3 236 25.8
C06p16490 Brassica napus HOM05D003463 ORTHO05D004206 5.5e-15 85.9 277 23.8
BolC6t36852H Brassica oleracea HOM05D003463 ORTHO05D004206 5.5e-15 85.9 277 23.8
Glyma.13G305000 Glycine max HOM05D003463 ORTHO05D004206 5.5e-15 85.9 235 26.4
Gohir.D02G186400 Gossypium hirsutum HOM05D003463 ORTHO05D004206 5.5e-15 85.9 236 26.7
Gorai.005G208600 Gossypium raimondii HOM05D003463 ORTHO05D004206 5.5e-15 85.9 236 26.7
Nn1g03744 Nelumbo nucifera HOM05D003463 ORTHO05D004206 5.5e-15 85.9 236 25.0
Psat7g193080 Pisum sativum HOM05D003463 ORTHO05D004206 5.5e-15 85.9 236 25.4
BcaC08g44245 Brassica carinata HOM05D003463 ORTHO05D004206 7.2e-15 85.5 277 23.8
MELO3C018791.2 Cucumis melo HOM05D003463 ORTHO05D004206 7.2e-15 85.5 236 25.4
VMungo1080G1634 Vigna mungo HOM05D003463 ORTHO05D004206 7.2e-15 85.5 187 28.3
Ah.01g005040 Amaranthus hybridus HOM05D003463 ORTHO05D004206 9.4e-15 85.1 243 25.9
PRCOL_00001206 Prasinoderma coloniale HOM05D003463 ORTHO05D004206 9.4e-15 85.1 272 29.0
Psat0s3330g0040 Pisum sativum HOM05D003463 ORTHO05D004206 1.2e-14 84.7 211 26.5
CSS0001270 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 1.6e-14 84.3 240 27.1
Migut.M00384 Erythranthe guttata HOM05D003463 ORTHO05D004206 1.6e-14 84.3 238 26.1
CAN.G86.25 Capsicum annuum HOM05D003463 ORTHO05D004206 2.1e-14 84.0 238 26.1
Dinv10901 Davidia involucrata HOM05D003463 ORTHO05D004206 2.1e-14 84.0 236 25.4
Duzib248G0717 Durio zibethinus HOM05D003463 ORTHO05D004206 2.1e-14 84.0 237 25.3
Prupe.3G222600 Prunus persica HOM05D003463 ORTHO05D004206 2.1e-14 84.0 234 26.9
SHI10282 Sapria himalayana HOM05D003463 ORTHO05D004206 2.1e-14 84.0 238 23.9
TPR.G30794 Trifolium pratense HOM05D003463 ORTHO05D004206 2.1e-14 84.0 211 26.1
CSS0039700 Camellia sinensis var. sinensis HOM05D003463 ORTHO05D004206 2.7e-14 83.6 240 27.1
CiPaw.04G119100 Carya illinoinensis HOM05D003463 ORTHO05D004206 2.7e-14 83.6 238 24.8
Gohir.A03G162950 Gossypium hirsutum HOM05D003463 ORTHO05D004206 2.7e-14 83.6 236 26.3
Lj3g0003812 Lotus japonicus HOM05D003463 ORTHO05D004206 2.7e-14 83.6 234 25.6
Oeu011067.1 Olea europaea HOM05D003463 ORTHO05D004206 2.7e-14 83.6 240 25.8
Phvul.005G112000 Phaseolus vulgaris HOM05D003463 ORTHO05D004206 2.7e-14 83.6 195 28.2
ClCG02G001610 Citrullus lanatus HOM05D003463 ORTHO05D004206 3.6e-14 83.2 242 24.4
Duzib052G0139 Durio zibethinus HOM05D003463 ORTHO05D004206 3.6e-14 83.2 237 26.2
ECA233G2663 Erigeron canadensis HOM05D003463 ORTHO05D004206 3.6e-14 83.2 238 24.8
FvH4_6g43760 Fragaria vesca HOM05D003463 ORTHO05D004206 3.6e-14 83.2 234 26.1
FAN05G2372 Fragaria x ananassa HOM05D003463 ORTHO05D004206 3.6e-14 83.2 234 26.1
FAN09G4547 Fragaria x ananassa HOM05D003463 ORTHO05D004206 3.6e-14 83.2 234 26.1
FAN14G1979 Fragaria x ananassa HOM05D003463 ORTHO05D004206 3.6e-14 83.2 234 26.1
CsaV3_7G003880 Cucumis sativus L. HOM05D003463 ORTHO05D004206 4.7e-14 82.8 238 24.8
FAN02G4525 Fragaria x ananassa HOM05D003463 ORTHO05D004206 4.7e-14 82.8 234 26.1
Hund08062 Selenicereus undatus HOM05D003463 ORTHO05D004206 4.7e-14 82.8 235 25.5
Zm00001eb171790 Zea mays HOM05D003463 ORTHO05D004206 4.7e-14 82.8 239 28.5
EL10Ac9g22340 Beta vulgaris HOM05D003463 ORTHO05D004206 6.1e-14 82.4 245 24.9
Ca_01564_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 6.1e-14 82.4 234 25.6
SalBow7G2865 Salvia bowleyana HOM05D003463 ORTHO05D004206 6.1e-14 82.4 240 26.2
Ca_20672_v3 Cicer arietinum L. HOM05D003463 ORTHO05D004206 7.9e-14 82.0 236 26.3
Sed0018482 Sechium edule HOM05D003463 ORTHO05D004206 7.9e-14 82.0 236 25.0
DCAR_009696 Daucus carota HOM05D003463 ORTHO05D004206 1.0e-13 81.6 246 27.2
Medtr2g089080 Medicago truncatula HOM05D003463 ORTHO05D004206 1.0e-13 81.6 211 25.6
PSO541G5151 Papaver somniferum HOM05D003463 ORTHO05D004206 1.0e-13 81.6 237 25.7
PSO675G4322 Papaver somniferum HOM05D003463 ORTHO05D004206 1.0e-13 81.6 236 25.8
GSVIVG01030649001 Vitis vinifera HOM05D003463 ORTHO05D004206 1.0e-13 81.6 242 24.0
THA.LOC104808502 Tarenaya hassleriana HOM05D003463 ORTHO05D004206 1.4e-13 81.3 242 26.9
Cfa014461 Carpinus fangiana HOM05D003463 ORTHO05D004206 3.0e-13 80.1 235 25.5
Os08g0180100 Oryza sativa ssp. japonica HOM05D003463 ORTHO05D004206 3.0e-13 80.1 239 27.6
AagrBONN_evm.TU.Sc2ySwM_117.2770 Anthoceros agrestis HOM05D003463 ORTHO05D004206 5.2e-13 79.3 189 27.5
Zm00001eb413080 Zea mays HOM05D003463 ORTHO05D004206 6.7e-13 79.0 239 28.9
Eucgr.A01739 Eucalyptus grandis HOM05D003463 ORTHO05D004206 1.5e-12 77.8 238 25.6
Thecc.02G164300 Theobroma cacao HOM05D003463 ORTHO05D004206 2.0e-12 77.4 237 25.7
Nn7g36849 Nelumbo nucifera HOM05D003463 ORTHO05D004206 3.3e-12 76.6 213 28.2
SGA_v2.0_scaffold34G13880 Striga asiatica HOM05D003463 ORTHO05D004206 4.4e-12 76.3 241 24.1
Eucgr.E02490 Eucalyptus grandis HOM05D003463 ORTHO05D004206 5.7e-12 75.9 243 25.9
Actinidia27017 Actinidia chinensis HOM05D003463 ORTHO05D004206 7.4e-12 75.5 181 26.5
DCAR_021199 Daucus carota HOM05D003463 ORTHO05D004206 1.7e-11 74.3 241 24.1
Sed0025509 Sechium edule HOM05D003463 ORTHO05D004206 4.8e-11 72.8 236 22.9
Haze_12964 Corylus avellana HOM05D003463 ORTHO05D004206 4.1e-10 69.7 180 25.6
QL08p034245 Quercus lobata HOM05D003463 ORTHO05D004206 4.1e-10 69.7 180 26.7
Lj1C753T3 Lonicera japonica HOM05D003463 ORTHO05D004206 7.7e-09 65.5 235 23.0
Hma1.2p1_2477F.1_g322850 Hydrangea macrophylla HOM05D003463 ORTHO05D004206 2.2e-08 63.9 273 24.5
MCO11G062 Micromonas commoda HOM05D003463 ORTHO05D004206 4.2e-07 59.7 106 31.1
unitig_8.g4614 Utricularia gibba HOM05D003463 ORTHO05D004206 2.7e-06 57.0 96 32.3


User provided reference genes

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