Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 0.0e+00 1352.8 857 100.0
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 7.1e-74 283.1 653 30.5
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 2.1e-73 281.6 643 30.8
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 3.9e-72 277.3 651 30.1
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 3.9e-72 277.3 663 29.7
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 2.5e-71 274.6 635 31.2
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 7.3e-71 273.1 643 31.1
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 1.3e-70 272.3 651 29.5
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 2.1e-70 271.6 642 30.7
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 3.6e-70 270.8 660 30.6
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 3.6e-70 270.8 651 31.5
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 4.8e-70 270.4 651 29.5
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 4.8e-70 270.4 654 30.4
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 4.8e-70 270.4 649 30.5
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 8.1e-70 269.6 638 30.4
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 8.1e-70 269.6 631 31.5
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 8.1e-70 269.6 665 29.5
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 1.8e-69 268.5 646 30.8
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 2.4e-69 268.1 660 30.6
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 2.4e-69 268.1 645 31.5
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 4.0e-69 267.3 693 31.5
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 1.5e-68 265.4 640 30.0
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 1.5e-68 265.4 645 31.5
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 2.0e-68 265.0 632 30.9
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 2.6e-68 264.6 654 30.1
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 2.6e-68 264.6 659 28.7
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 3.4e-68 264.2 643 30.2
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 4.4e-68 263.8 650 30.5
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 5.8e-68 263.5 648 28.9
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 5.8e-68 263.5 645 31.0
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 5.8e-68 263.5 642 29.3
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 5.8e-68 263.5 603 31.2
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 7.6e-68 263.1 641 31.7
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.7e-67 261.9 656 31.1
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 2.9e-67 261.2 728 27.9
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 4.9e-67 260.4 643 30.5
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 4.9e-67 260.4 649 29.7
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 1.4e-66 258.8 653 30.6
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 1.4e-66 258.8 619 32.1
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 1.9e-66 258.5 629 29.6
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 2.4e-66 258.1 619 29.6
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 2.4e-66 258.1 653 30.3
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 3.2e-66 257.7 647 30.0
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 5.4e-66 256.9 641 29.8
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 7.1e-66 256.5 634 29.5
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 4.6e-65 253.8 656 28.8
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 6.0e-65 253.4 638 29.0
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 6.0e-65 253.4 662 29.9
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 7.9e-65 253.1 633 29.2
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 1.0e-64 252.7 676 28.7
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 1.3e-64 252.3 642 29.8
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 1.7e-64 251.9 664 29.7
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 2.3e-64 251.5 620 29.4
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 6.6e-64 250.0 656 29.1
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 8.7e-64 249.6 631 29.3
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 1.1e-63 249.2 635 29.1
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 1.5e-63 248.8 642 28.8
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 1.5e-63 248.8 623 29.4
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 1.5e-63 248.8 641 29.3
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 1.5e-63 248.8 652 29.6
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 1.9e-63 248.4 640 28.6
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 1.9e-63 248.4 641 29.6
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 2.5e-63 248.1 629 28.8
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 4.3e-63 247.3 627 29.0
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 4.3e-63 247.3 633 29.5
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 2.1e-62 245.0 641 29.6
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 2.8e-62 244.6 635 28.7
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 2.8e-62 244.6 652 28.2
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 3.6e-62 244.2 645 28.2
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 4.8e-62 243.8 637 28.9
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 8.1e-62 243.0 633 28.4
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 1.4e-61 242.3 679 27.5
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 3.1e-61 241.1 665 27.5
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 4.0e-61 240.7 660 30.8
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 5.3e-61 240.4 593 30.0
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 6.9e-61 240.0 634 28.5
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 9.0e-61 239.6 633 28.8
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 1.2e-60 239.2 623 28.7
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 2.0e-60 238.4 639 29.1
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.4e-60 237.7 660 28.5
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.4e-60 237.7 660 28.5
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 3.4e-60 237.7 630 28.4
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 5.8e-60 236.9 652 29.4
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 1.3e-59 235.7 594 30.0
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 2.9e-59 234.6 662 28.4
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 3.8e-59 234.2 644 28.7
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 3.8e-59 234.2 592 29.6
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 3.8e-59 234.2 633 29.1
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 4.9e-59 233.8 590 29.2
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 7.9e-57 226.5 356 34.6
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 2.3e-56 224.9 377 34.5
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 3.0e-56 224.6 565 31.3
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 3.0e-56 224.6 638 29.8
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 3.9e-56 224.2 676 28.4
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 6.7e-56 223.4 666 27.9
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 6.7e-56 223.4 645 29.9
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 5.6e-55 220.3 364 35.2
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 2.1e-54 218.4 649 27.7
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 2.1e-54 218.4 662 29.2
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.1e-53 216.1 382 33.8
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 2.0e-52 211.8 528 30.7
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 2.1e-49 201.8 630 26.2
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 2.7e-49 201.4 659 26.4
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 3.0e-48 198.0 342 33.6
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 3.0e-48 198.0 662 25.1
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 1.5e-44 185.7 640 26.7
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 1.7e-43 182.2 560 27.9
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 7.2e-42 176.8 511 29.5
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 8.7e-40 169.9 647 24.6
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 3.3e-39 167.9 334 30.5
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 5.7e-39 167.2 309 35.0
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 5.5e-34 150.6 652 24.2
Cfa022899 Carpinus fangiana HOM05D004772 ORTHO05D006892 1.2e-33 149.4 389 27.8
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 7.4e-31 140.2 230 33.9
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 2.2e-27 128.6 369 29.0
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 1.8e-21 109.0 456 25.4
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 2.4e-21 108.6 236 27.5
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 2.0e-20 105.5 309 26.9
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.0e-16 93.2 147 32.7
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 1.4e-16 92.8 138 35.5
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 3.0e-16 91.7 336 26.8
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 1.7e-11 75.9 98 34.7
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 9.4e-10 70.1 170 30.0
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 1.2e-07 63.2 81 37.0
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 1.5e-07 62.8 79 38.0
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 2.0e-07 62.4 165 29.1
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 3.7e-06 58.2 55 43.6


User provided reference genes

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