Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 2.4e-290 1001.5 532 100.0
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 3.0e-22 110.9 392 27.0
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 3.0e-22 110.9 428 28.0
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 4.3e-21 107.1 411 27.0
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 7.4e-21 106.3 260 33.8
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 9.6e-21 105.9 281 32.4
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 9.6e-21 105.9 331 30.8
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 9.6e-21 105.9 247 34.4
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 1.3e-20 105.5 247 34.0
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 2.1e-20 104.8 252 34.9
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 2.8e-20 104.4 414 27.1
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 4.8e-20 103.6 249 32.9
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 4.8e-20 103.6 201 36.3
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 4.8e-20 103.6 246 33.3
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 8.1e-20 102.8 384 26.8
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 8.1e-20 102.8 259 32.0
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 8.1e-20 102.8 259 32.0
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 1.1e-19 102.4 255 33.7
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 1.1e-19 102.4 197 36.0
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 1.1e-19 102.4 197 36.0
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 1.1e-19 102.4 270 32.2
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 1.8e-19 101.7 266 32.3
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 1.8e-19 101.7 259 31.7
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 2.4e-19 101.3 197 35.5
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 2.4e-19 101.3 197 35.5
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 2.4e-19 101.3 270 32.2
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 3.1e-19 100.9 255 33.3
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 3.1e-19 100.9 250 32.0
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 3.1e-19 100.9 197 35.5
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 3.1e-19 100.9 197 36.0
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 3.1e-19 100.9 265 33.6
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 4.0e-19 100.5 257 33.5
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 6.9e-19 99.8 300 29.7
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 6.9e-19 99.8 265 30.9
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 6.9e-19 99.8 251 32.7
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 6.9e-19 99.8 273 31.9
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 9.0e-19 99.4 246 34.1
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 9.0e-19 99.4 246 32.9
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 1.2e-18 99.0 288 31.2
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 1.2e-18 99.0 246 32.5
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.2e-18 99.0 261 32.6
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 1.5e-18 98.6 263 31.2
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 2.0e-18 98.2 279 31.9
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 2.0e-18 98.2 247 34.0
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 2.6e-18 97.8 257 32.7
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 2.6e-18 97.8 255 32.9
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 3.4e-18 97.4 261 33.0
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 3.4e-18 97.4 251 33.1
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 3.4e-18 97.4 246 32.9
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 3.4e-18 97.4 237 32.5
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 4.5e-18 97.1 269 30.5
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 4.5e-18 97.1 268 32.8
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 4.5e-18 97.1 250 32.0
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 5.8e-18 96.7 267 30.0
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 5.8e-18 96.7 262 32.8
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 5.8e-18 96.7 304 29.3
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 7.6e-18 96.3 292 31.2
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 7.6e-18 96.3 246 32.5
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 1.0e-17 95.9 193 34.7
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 1.0e-17 95.9 250 30.8
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 1.0e-17 95.9 248 32.7
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 1.0e-17 95.9 322 30.4
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 1.3e-17 95.5 293 31.4
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 1.3e-17 95.5 253 32.4
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 1.3e-17 95.5 250 32.8
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 1.7e-17 95.1 246 31.3
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 2.2e-17 94.7 249 30.1
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 2.2e-17 94.7 253 31.2
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 2.9e-17 94.4 276 30.1
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 3.8e-17 94.0 250 30.8
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 3.8e-17 94.0 245 30.6
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 3.8e-17 94.0 252 31.7
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 4.9e-17 93.6 293 31.4
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 6.5e-17 93.2 432 26.6
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 6.5e-17 93.2 250 32.4
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 6.5e-17 93.2 255 31.4
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 6.5e-17 93.2 246 32.5
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 8.4e-17 92.8 302 30.1
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 8.4e-17 92.8 253 31.2
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 1.1e-16 92.4 249 30.5
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 1.1e-16 92.4 245 31.8
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 1.4e-16 92.0 262 30.2
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 1.4e-16 92.0 252 31.3
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 1.9e-16 91.7 249 29.3
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 1.9e-16 91.7 255 30.2
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 1.9e-16 91.7 246 31.7
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 3.2e-16 90.9 266 30.1
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 4.2e-16 90.5 247 31.2
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 5.5e-16 90.1 278 30.2
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 5.5e-16 90.1 250 30.8
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 7.1e-16 89.7 249 30.1
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 1.2e-15 89.0 210 31.9
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.6e-15 88.6 272 30.5
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 2.1e-15 88.2 272 30.5
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 3.5e-15 87.4 253 30.4
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 7.9e-15 86.3 315 26.7
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 7.9e-15 86.3 268 29.5
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 1.0e-14 85.9 276 29.0
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 1.8e-14 85.1 255 30.6
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 3.9e-14 84.0 227 33.5
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 3.9e-14 84.0 237 32.9
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 8.7e-14 82.8 243 30.5
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.1e-13 82.4 242 30.6
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.5e-13 82.0 242 30.6
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 2.5e-13 81.3 297 28.3
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 2.5e-13 81.3 430 25.1
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 2.5e-13 81.3 209 34.9
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 3.3e-13 80.9 315 26.7
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 3.3e-13 80.9 242 30.6
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 3.3e-13 80.9 242 30.6
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 3.3e-13 80.9 242 30.6
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 4.3e-13 80.5 256 29.3
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 9.6e-13 79.3 256 28.9
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 1.3e-12 79.0 392 24.2
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 1.3e-12 79.0 245 27.3
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 1.6e-12 78.6 268 28.7
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 1.6e-12 78.6 300 27.7
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 2.4e-11 74.7 262 29.4
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 1.5e-10 72.0 126 34.1
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 1.5e-10 72.0 158 32.3
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 3.8e-09 67.4 193 29.0
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 2.5e-08 64.7 87 41.4
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 5.5e-08 63.5 247 27.1
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 6.1e-07 60.1 247 27.9
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 3.9e-06 57.4 84 36.9
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 8.7e-06 56.2 81 38.3


User provided reference genes

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