Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO01G306 Micromonas commoda HOM05D003893 ORTHO05D005167 0.0e+00 3593.9 2007 100.0
Gohir.D12G215300 Gossypium hirsutum HOM05D003893 ORTHO05D005167 4.2e-53 215.3 842 25.9
Gorai.008G230900 Gossypium raimondii HOM05D003893 ORTHO05D005167 3.6e-52 212.2 842 25.8
Carub.0007s2378 Capsella rubella HOM05D003893 ORTHO05D005167 8.9e-51 207.6 849 25.7
CARHR224310 Cardamine hirsuta HOM05D003893 ORTHO05D005167 8.9e-51 207.6 849 26.4
Mapoly0105s0045 Marchantia polymorpha HOM05D003893 ORTHO05D005167 1.5e-50 206.8 658 29.5
Zm00001eb000190 Zea mays HOM05D003893 ORTHO05D005167 2.0e-50 206.5 674 27.4
THA.LOC104798352 Tarenaya hassleriana HOM05D003893 ORTHO05D005167 2.6e-50 206.1 848 25.6
Thhalv10024195m.g Eutrema salsugineum HOM05D003893 ORTHO05D005167 4.4e-50 205.3 656 27.4
Lalb_Chr09g0329781 Lupinus albus HOM05D003893 ORTHO05D005167 5.7e-50 204.9 679 26.8
Sp7g16550 Schrenkiella parvula HOM05D003893 ORTHO05D005167 5.7e-50 204.9 849 25.6
Atru.chr9.1207 Acer truncatum HOM05D003893 ORTHO05D005167 9.8e-50 204.1 1006 25.9
AL7G36990 Arabidopsis lyrata HOM05D003893 ORTHO05D005167 1.3e-49 203.8 849 25.8
BcaC09g51627 Brassica carinata HOM05D003893 ORTHO05D005167 3.7e-49 202.2 656 27.4
Glyma.17G148200 Glycine max HOM05D003893 ORTHO05D005167 3.7e-49 202.2 673 27.2
BolC1t01093H Brassica oleracea HOM05D003893 ORTHO05D005167 8.3e-49 201.1 850 26.0
BraA01t00910Z Brassica rapa HOM05D003893 ORTHO05D005167 8.3e-49 201.1 849 25.8
Lj4g0018101 Lotus japonicus HOM05D003893 ORTHO05D005167 8.3e-49 201.1 671 27.7
CANSAT21G1178 Cannabis sativa HOM05D003893 ORTHO05D005167 1.4e-48 200.3 844 25.8
A01p09670 Brassica napus HOM05D003893 ORTHO05D005167 1.8e-48 199.9 849 25.9
C01p11280 Brassica napus HOM05D003893 ORTHO05D005167 1.8e-48 199.9 850 25.9
Cfa012326 Carpinus fangiana HOM05D003893 ORTHO05D005167 1.8e-48 199.9 842 26.5
Medtr4g099300 Medicago truncatula HOM05D003893 ORTHO05D005167 3.2e-48 199.1 678 27.0
AT4G17610 Arabidopsis thaliana HOM05D003893 ORTHO05D005167 4.1e-48 198.7 849 25.3
RcHm_v2.0_Chr7g0205631 Rosa chinensis HOM05D003893 ORTHO05D005167 4.1e-48 198.7 673 26.9
Thecc.03G240200 Theobroma cacao HOM05D003893 ORTHO05D005167 7.0e-48 198.0 845 25.3
COL.COLO4_07201 Corchorus olitorius HOM05D003893 ORTHO05D005167 1.2e-47 197.2 845 25.2
arahy.Tifrunner.gnm1.ann1.TA1JJE Arachis hypogaea HOM05D003893 ORTHO05D005167 1.6e-47 196.8 676 27.2
Prupe.5G055400 Prunus persica HOM05D003893 ORTHO05D005167 1.6e-47 196.8 674 26.9
MD04G1055600 Malus domestica HOM05D003893 ORTHO05D005167 2.0e-47 196.4 674 26.3
QL12p008764 Quercus lobata HOM05D003893 ORTHO05D005167 4.6e-47 195.3 868 25.9
ATR0665G346 Amborella trichopoda HOM05D003893 ORTHO05D005167 7.8e-47 194.5 677 27.0
Duzib205G1731 Durio zibethinus HOM05D003893 ORTHO05D005167 7.8e-47 194.5 682 27.0
Phvul.003G225400 Phaseolus vulgaris HOM05D003893 ORTHO05D005167 7.8e-47 194.5 668 26.9
Aa31LG6G350 Aethionema arabicum HOM05D003893 ORTHO05D005167 1.3e-46 193.7 849 25.8
ClCG10G002230 Citrullus lanatus HOM05D003893 ORTHO05D005167 1.3e-46 193.7 684 27.0
Manes.01G088800 Manihot esculenta HOM05D003893 ORTHO05D005167 2.3e-46 193.0 675 27.6
Aqoxy5G02623 Aquilegia oxysepala HOM05D003893 ORTHO05D005167 1.9e-45 189.9 674 27.0
Ciclev10024446m.g Citrus clementina HOM05D003893 ORTHO05D005167 7.3e-45 188.0 1011 26.0
ECA233G0269 Erigeron canadensis HOM05D003893 ORTHO05D005167 7.3e-45 188.0 977 25.2
Sopen08g026360 Solanum pennellii HOM05D003893 ORTHO05D005167 9.5e-45 187.6 652 26.1
PGR042G1290 Punica granatum HOM05D003893 ORTHO05D005167 1.6e-44 186.8 678 26.4
MELO3C013898.2 Cucumis melo HOM05D003893 ORTHO05D005167 2.8e-44 186.0 675 26.8
QL01p036487 Quercus lobata HOM05D003893 ORTHO05D005167 2.8e-44 186.0 656 26.8
Cc08_g11340 Coffea canephora HOM05D003893 ORTHO05D005167 3.6e-44 185.7 859 25.1
CsaV3_3G002270 Cucumis sativus L. HOM05D003893 ORTHO05D005167 1.8e-43 183.3 854 25.6
Migut.E01633 Erythranthe guttata HOM05D003893 ORTHO05D005167 3.1e-43 182.6 844 23.6
TAR375G0027 Trochodendron aralioides HOM05D003893 ORTHO05D005167 3.1e-43 182.6 850 25.5
MSTRG.1953 Avicennia marina HOM05D003893 ORTHO05D005167 6.8e-43 181.4 844 24.4
SalBow1G1311 Salvia bowleyana HOM05D003893 ORTHO05D005167 1.2e-42 180.6 873 23.6
SalBow1G5499 Salvia bowleyana HOM05D003893 ORTHO05D005167 1.2e-42 180.6 873 23.6
BcaNung00076 Brassica carinata HOM05D003893 ORTHO05D005167 9.8e-42 177.6 156 53.8
GSVIVG01003688001 Vitis vinifera HOM05D003893 ORTHO05D005167 1.7e-41 176.8 848 25.1
Sc07g0009060 Simmondsia chinensis HOM05D003893 ORTHO05D005167 3.7e-41 175.6 852 24.3
arahy.Tifrunner.gnm1.ann1.763U0W Arachis hypogaea HOM05D003893 ORTHO05D005167 8.3e-41 174.5 156 53.2
AUR62018840 Chenopodium quinoa HOM05D003893 ORTHO05D005167 1.4e-40 173.7 148 54.1
DCAR_005586 Daucus carota HOM05D003893 ORTHO05D005167 1.4e-40 173.7 676 25.3
Sed0003705 Sechium edule HOM05D003893 ORTHO05D005167 7.0e-40 171.4 148 54.1
Ca_30503_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 1.2e-39 170.6 174 48.3
Haze_08369 Corylus avellana HOM05D003893 ORTHO05D005167 2.0e-39 169.9 148 54.1
Gohir.A12G212800 Gossypium hirsutum HOM05D003893 ORTHO05D005167 2.0e-39 169.9 827 23.9
PSO732G0344 Papaver somniferum HOM05D003893 ORTHO05D005167 2.0e-39 169.9 147 53.7
CAN.G572.10 Capsicum annuum HOM05D003893 ORTHO05D005167 2.7e-39 169.5 148 52.7
Cpa.g.sc2698.1 Carica papaya HOM05D003893 ORTHO05D005167 2.7e-39 169.5 147 53.1
Solyc08g077850.2 Solanum lycopersicum HOM05D003893 ORTHO05D005167 2.7e-39 169.5 148 52.7
Psat4g075840 Pisum sativum HOM05D003893 ORTHO05D005167 3.5e-39 169.1 176 47.7
CDE12G0573 Ceratophyllum demersum HOM05D003893 ORTHO05D005167 4.6e-39 168.7 176 48.3
SMO364G0317 Selaginella moellendorffii HOM05D003893 ORTHO05D005167 4.6e-39 168.7 150 55.3
Eucgr.E00353 Eucalyptus grandis HOM05D003893 ORTHO05D005167 6.0e-39 168.3 161 50.3
Peaxi162Scf00301g00417 Petunia axillaris HOM05D003893 ORTHO05D005167 6.0e-39 168.3 148 50.7
CSS0002187 Camellia sinensis var. sinensis HOM05D003893 ORTHO05D005167 7.8e-39 167.9 147 52.4
CBR_g21115 Chara braunii HOM05D003893 ORTHO05D005167 7.8e-39 167.9 405 35.3
PSO675G1423 Papaver somniferum HOM05D003893 ORTHO05D005167 7.8e-39 167.9 147 53.1
Potri.001G150900 Populus trichocarpa HOM05D003893 ORTHO05D005167 7.8e-39 167.9 147 53.7
Nitab4.5_0000500g0310 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.0e-38 167.5 148 51.4
Nitab4.5_0009451g0060 Nicotiana tabacum HOM05D003893 ORTHO05D005167 1.3e-38 167.2 148 51.4
TPR.G17142 Trifolium pratense HOM05D003893 ORTHO05D005167 1.3e-38 167.2 174 47.7
Lj8C277G4 Lonicera japonica HOM05D003893 ORTHO05D005167 1.7e-38 166.8 149 53.7
Os03g0100500 Oryza sativa ssp. japonica HOM05D003893 ORTHO05D005167 1.7e-38 166.8 148 54.1
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 2.3e-38 166.4 148 52.7
FvH4_5g20370 Fragaria vesca HOM05D003893 ORTHO05D005167 8.6e-38 164.5 149 53.0
FAN08G3381 Fragaria x ananassa HOM05D003893 ORTHO05D005167 8.6e-38 164.5 149 53.0
FAN18G3472 Fragaria x ananassa HOM05D003893 ORTHO05D005167 8.6e-38 164.5 149 53.0
Dinv25135 Davidia involucrata HOM05D003893 ORTHO05D005167 1.1e-37 164.1 691 25.2
HanXRQChr16g0504541 Helianthus annuus HOM05D003893 ORTHO05D005167 3.3e-37 162.5 148 50.0
Lsat_1_v5_gn_6_67000 Lactuca sativa HOM05D003893 ORTHO05D005167 1.2e-36 160.6 148 50.0
Cre01.g027350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 4.7e-36 158.7 148 54.7
unitig_21.g20369 Utricularia gibba HOM05D003893 ORTHO05D005167 1.4e-35 157.1 148 48.6
Ca_22016_v3 Cicer arietinum L. HOM05D003893 ORTHO05D005167 2.4e-32 146.4 678 25.1
EL10Ac5g12271 Beta vulgaris HOM05D003893 ORTHO05D005167 2.1e-31 143.3 148 48.0
BcaNung07386 Brassica carinata HOM05D003893 ORTHO05D005167 1.7e-30 140.2 156 48.1
Cre15.g637350 Chlamydomonas reinhardtii HOM05D003893 ORTHO05D005167 4.3e-29 135.6 153 47.1
PRCOL_00006953 Prasinoderma coloniale HOM05D003893 ORTHO05D005167 1.8e-27 130.2 669 26.2
Hund14480 Selenicereus undatus HOM05D003893 ORTHO05D005167 3.1e-27 129.4 148 43.2
Hma1.2p1_0840F.1_g226640 Hydrangea macrophylla HOM05D003893 ORTHO05D005167 5.2e-27 128.6 696 25.7
AUR62007166 Chenopodium quinoa HOM05D003893 ORTHO05D005167 2.6e-26 126.3 101 53.5
VMungo0251G2254 Vigna mungo HOM05D003893 ORTHO05D005167 5.8e-26 125.2 102 53.9
vmacro17756 Vaccinium macrocarpon HOM05D003893 ORTHO05D005167 1.1e-24 120.9 155 44.5
Rhsim11G0002000 Rhododendron simsii HOM05D003893 ORTHO05D005167 3.2e-24 119.4 112 48.2
Ah.07g199160 Amaranthus hybridus HOM05D003893 ORTHO05D005167 3.0e-14 86.3 155 34.2
Rhsim11G0002100 Rhododendron simsii HOM05D003893 ORTHO05D005167 2.0e-10 73.6 581 22.5
VMungo0251G0173 Vigna mungo HOM05D003893 ORTHO05D005167 2.0e-10 73.6 556 21.2
Cre03.g169700 Chlamydomonas reinhardtii HOM05D006539 ORTHO05D008694 7.6e-10 71.6 146 30.8
Ah.07g199170 Amaranthus hybridus HOM05D003893 ORTHO05D005167 6.4e-09 68.6 48 62.5
Actinidia25908 Actinidia chinensis HOM05D003893 ORTHO05D005167 1.4e-08 67.4 253 25.3
CiPaw.11G072600 Carya illinoinensis HOM05D003893 ORTHO05D005167 3.2e-08 66.2 242 25.6
Cpa.g.sc14.138 Carica papaya HOM05D006539 ORTHO05D008694 4.2e-08 65.9 142 31.0
Mapoly0088s0068 Marchantia polymorpha HOM05D006539 ORTHO05D008694 7.1e-08 65.1 159 25.2
DCAR_011065 Daucus carota HOM05D006539 ORTHO05D008694 9.3e-08 64.7 142 31.0
Rhsim10G0046900 Rhododendron simsii HOM05D006539 ORTHO05D008694 9.3e-08 64.7 149 28.2
Thecc.04G090200 Theobroma cacao HOM05D006539 ORTHO05D008694 9.3e-08 64.7 142 31.0
Zm00001eb326670 Zea mays HOM05D006539 ORTHO05D008694 9.3e-08 64.7 143 30.8
Gohir.A11G071300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 1.2e-07 64.3 142 30.3
Gohir.D11G075300 Gossypium hirsutum HOM05D006539 ORTHO05D008694 1.2e-07 64.3 142 30.3
Gorai.007G080900 Gossypium raimondii HOM05D006539 ORTHO05D008694 1.2e-07 64.3 142 30.3
TAR371G0397 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.2e-07 64.3 142 30.3
TAR371G0750 Trochodendron aralioides HOM05D006539 ORTHO05D008694 1.2e-07 64.3 142 30.3
TWI32G0765 Tripterygium wilfordii HOM05D006539 ORTHO05D008694 1.6e-07 63.9 142 31.0
CDE06G2615 Ceratophyllum demersum HOM05D006539 ORTHO05D008694 2.7e-07 63.2 142 29.6
Hund15564 Selenicereus undatus HOM05D006539 ORTHO05D008694 2.7e-07 63.2 147 27.9
Aqoxy3G00450 Aquilegia oxysepala HOM05D006539 ORTHO05D008694 3.5e-07 62.8 143 30.1
Cpa.g.sc16.75 Carica papaya HOM05D006695 ORTHO05D008239 3.5e-07 62.8 142 33.8
Eucgr.I01991 Eucalyptus grandis HOM05D006539 ORTHO05D008694 3.5e-07 62.8 143 30.1
Lj1g0006679 Lotus japonicus HOM05D006539 ORTHO05D008694 3.5e-07 62.8 149 29.5
Nn4g23332 Nelumbo nucifera HOM05D006539 ORTHO05D008694 3.5e-07 62.8 142 30.3
PGR004G1570 Punica granatum HOM05D006695 ORTHO05D008239 3.5e-07 62.8 142 33.8
ATR0111G028 Amborella trichopoda HOM05D006539 ORTHO05D008694 4.6e-07 62.4 143 28.7
EL10Ac2g03043 Beta vulgaris HOM05D006539 ORTHO05D008694 4.6e-07 62.4 148 27.7
CsaV3_3G041040 Cucumis sativus L. HOM05D006539 ORTHO05D008694 4.6e-07 62.4 142 30.3
Sc11g0004810 Simmondsia chinensis HOM05D006539 ORTHO05D008694 4.6e-07 62.4 149 30.2
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 4.6e-07 62.4 144 29.9
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 6.0e-07 62.0 142 30.3
SEGI_40704 Sequoiadendron giganteum HOM05D006539 ORTHO05D008694 6.0e-07 62.0 147 30.6
HPP92_006554 Vanilla planifolia HOM05D006539 ORTHO05D008694 6.0e-07 62.0 142 28.9
HPP92_013411 Vanilla planifolia HOM05D006539 ORTHO05D008694 6.0e-07 62.0 142 28.9
AagrBONN_evm.TU.Sc2ySwM_117.170 Anthoceros agrestis HOM05D006539 ORTHO05D008694 7.9e-07 61.6 148 29.1
CiPaw.03G091900 Carya illinoinensis HOM05D006539 ORTHO05D008694 7.9e-07 61.6 144 32.6
ClCG10G015450 Citrullus lanatus HOM05D003516 ORTHO05D004068 7.9e-07 61.6 142 30.3
Os07g0598100 Oryza sativa ssp. japonica HOM05D006539 ORTHO05D008694 7.9e-07 61.6 156 26.3
PRCOL_00002708 Prasinoderma coloniale HOM05D006539 ORTHO05D008694 1.0e-06 61.2 129 27.9
Prupe.3G259900 Prunus persica HOM05D006539 ORTHO05D008694 1.0e-06 61.2 142 31.0
GSVIVG01011483001 Vitis vinifera HOM05D006539 ORTHO05D008694 1.0e-06 61.2 142 29.6
Migut.H00658 Erythranthe guttata HOM05D006539 ORTHO05D008694 1.3e-06 60.8 142 30.3
Phvul.008G040300 Phaseolus vulgaris HOM05D006539 ORTHO05D008694 1.3e-06 60.8 142 28.9
SGA_v2.0_scaffold4G02416 Striga asiatica HOM05D006539 ORTHO05D008694 1.3e-06 60.8 157 26.8
unitig_899.g15160 Utricularia gibba HOM05D006539 ORTHO05D008694 1.3e-06 60.8 149 31.5
VMungo1383G3577 Vigna mungo HOM05D006539 ORTHO05D008694 1.3e-06 60.8 142 28.9
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 1.7e-06 60.5 142 28.9
PGR004G2004 Punica granatum HOM05D006539 ORTHO05D008694 1.7e-06 60.5 144 31.2
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 2.3e-06 60.1 142 30.3
Glyma.08G241400 Glycine max HOM05D006539 ORTHO05D008694 2.3e-06 60.1 142 28.9
Manes.02G050600 Manihot esculenta HOM05D006539 ORTHO05D008694 2.3e-06 60.1 156 26.9
Medtr7g012240 Medicago truncatula HOM05D006539 ORTHO05D008694 2.3e-06 60.1 142 29.6
THA.LOC104821758 Tarenaya hassleriana HOM05D006695 ORTHO05D008239 2.3e-06 60.1 142 33.1
TPR.G33480 Trifolium pratense HOM05D006539 ORTHO05D008694 2.3e-06 60.1 142 29.6
TWI09G1388 Tripterygium wilfordii HOM05D006695 ORTHO05D008239 2.3e-06 60.1 142 33.1
arahy.Tifrunner.gnm1.ann1.YFBV2Q Arachis hypogaea HOM05D006539 ORTHO05D008694 3.0e-06 59.7 142 28.2
MSTRG.23905 Avicennia marina HOM05D006539 ORTHO05D008694 3.0e-06 59.7 143 29.4
C09p61730 Brassica napus HOM05D006539 ORTHO05D008694 3.0e-06 59.7 144 29.9
Duzib264G0172 Durio zibethinus HOM05D006539 ORTHO05D008694 3.0e-06 59.7 143 30.8
SalBow1G8487 Salvia bowleyana HOM05D006539 ORTHO05D008694 3.0e-06 59.7 143 30.1
TAR362G0795 Trochodendron aralioides HOM05D006695 ORTHO05D008239 3.0e-06 59.7 143 32.9
Atru.chr8.368 Acer truncatum HOM05D006539 ORTHO05D008694 3.9e-06 59.3 144 29.2
BcaC04g24242 Brassica carinata HOM05D006539 ORTHO05D008694 3.9e-06 59.3 144 29.2
A10p23500 Brassica napus HOM05D006539 ORTHO05D008694 3.9e-06 59.3 144 29.2
BolC9t59012H Brassica oleracea HOM05D006539 ORTHO05D008694 3.9e-06 59.3 144 29.9
Carub.0006s1356 Capsella rubella HOM05D006539 ORTHO05D008694 3.9e-06 59.3 144 28.5
FAN05G4473 Fragaria x ananassa HOM05D006539 ORTHO05D008694 3.9e-06 59.3 142 29.6
CARHR197920 Cardamine hirsuta HOM05D006539 ORTHO05D008694 5.1e-06 58.9 144 29.2
Ca_06802_v3 Cicer arietinum L. HOM05D006539 ORTHO05D008694 5.1e-06 58.9 142 28.9
Cc07_g03820 Coffea canephora HOM05D006539 ORTHO05D008694 5.1e-06 58.9 142 29.6
Lalb_Chr10g0093241 Lupinus albus HOM05D006539 ORTHO05D008694 5.1e-06 58.9 147 26.5
Sabra04G0067100 Salix brachista HOM05D006539 ORTHO05D008694 5.1e-06 58.9 156 26.3
vmacro05668 Vaccinium macrocarpon HOM05D006539 ORTHO05D008694 5.1e-06 58.9 149 27.5
Aa31LG11G14170 Aethionema arabicum HOM05D006539 ORTHO05D008694 6.6e-06 58.5 144 28.5
FvH4_6g47560 Fragaria vesca HOM05D006539 ORTHO05D008694 6.6e-06 58.5 142 29.6
FAN14G0848 Fragaria x ananassa HOM05D006539 ORTHO05D008694 6.6e-06 58.5 142 29.6
Peaxi162Scf00166g00943 Petunia axillaris HOM05D006539 ORTHO05D008694 6.6e-06 58.5 143 29.4
Potri.004G122300 Populus trichocarpa HOM05D006539 ORTHO05D008694 6.6e-06 58.5 156 25.6
QL02p039353 Quercus lobata HOM05D006539 ORTHO05D008694 6.6e-06 58.5 145 30.3
QL02p039600 Quercus lobata HOM05D006539 ORTHO05D008694 6.6e-06 58.5 145 30.3
RcHm_v2.0_Chr2g0166661 Rosa chinensis HOM05D006539 ORTHO05D008694 6.6e-06 58.5 142 29.6
Sp6g28700 Schrenkiella parvula HOM05D006539 ORTHO05D008694 6.6e-06 58.5 144 29.2
Thhalv10013964m.g Eutrema salsugineum HOM05D006539 ORTHO05D008694 8.7e-06 58.2 144 29.2
Thecc.04G272900 Theobroma cacao HOM05D006695 ORTHO05D008239 8.7e-06 58.2 142 33.1


User provided reference genes

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