Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO01G145 Micromonas commoda HOM05D005002 ORTHO05D006016 4.5e-68 261.2 134 100.0
Mapoly0011s0105 Marchantia polymorpha HOM05D005002 ORTHO05D006016 5.1e-19 98.2 112 48.2
TPR.G12644 Trifolium pratense HOM05D005002 ORTHO05D006016 5.1e-19 98.2 122 45.1
CDE04G1191 Ceratophyllum demersum HOM05D005002 ORTHO05D006016 3.3e-18 95.5 110 43.6
HanXRQChr14g0453401 Helianthus annuus HOM05D005002 ORTHO05D006016 3.3e-18 95.5 124 42.7
arahy.Tifrunner.gnm1.ann1.1V29TX Arachis hypogaea HOM05D005002 ORTHO05D006016 4.3e-18 95.1 107 46.7
Lalb_Chr10g0091021 Lupinus albus HOM05D005002 ORTHO05D006016 5.6e-18 94.7 124 42.7
TPR.G15628 Trifolium pratense HOM05D005002 ORTHO05D006016 5.6e-18 94.7 123 44.7
Migut.A00405 Erythranthe guttata HOM05D005002 ORTHO05D006016 7.3e-18 94.4 127 42.5
Psat0s2083g0280 Pisum sativum HOM05D005002 ORTHO05D006016 9.5e-18 94.0 109 45.9
Medtr7g080740 Medicago truncatula HOM05D005002 ORTHO05D006016 1.6e-17 93.2 107 47.7
Os09g0431500 Oryza sativa ssp. japonica HOM05D005002 ORTHO05D006016 1.6e-17 93.2 107 46.7
Pp3c6_16040 Physcomitrium patens HOM05D005002 ORTHO05D006016 1.6e-17 93.2 115 43.5
VMungo1383G2539 Vigna mungo HOM05D005002 ORTHO05D006016 1.6e-17 93.2 107 46.7
Glyma.11G160400 Glycine max HOM05D005002 ORTHO05D006016 2.1e-17 92.8 119 43.7
Oeu008768.2 Olea europaea HOM05D005002 ORTHO05D006016 2.1e-17 92.8 127 41.7
Phvul.008G002400 Phaseolus vulgaris HOM05D005002 ORTHO05D006016 2.8e-17 92.4 107 46.7
VMungo1383G3578 Vigna mungo HOM05D005002 ORTHO05D006016 2.8e-17 92.4 107 46.7
CSS0022428 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 3.6e-17 92.0 124 42.7
ATR0691G047 Amborella trichopoda HOM05D005002 ORTHO05D006016 4.7e-17 91.7 107 46.7
Dinv03972 Davidia involucrata HOM05D005002 ORTHO05D006016 4.7e-17 91.7 124 42.7
CSS0035568 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 6.2e-17 91.3 124 42.7
Glyma.18G054400 Glycine max HOM05D005002 ORTHO05D006016 6.2e-17 91.3 107 45.8
Manes.03G005700 Manihot esculenta HOM05D005002 ORTHO05D006016 6.2e-17 91.3 107 45.8
EL10Ac2g02432 Beta vulgaris HOM05D005002 ORTHO05D006016 8.1e-17 90.9 119 44.5
Lj1g0025268 Lotus japonicus HOM05D005002 ORTHO05D006016 8.1e-17 90.9 107 45.8
arahy.Tifrunner.gnm1.ann1.JDP7FN Arachis hypogaea HOM05D005002 ORTHO05D006016 1.4e-16 90.1 112 45.5
Nn3g17630 Nelumbo nucifera HOM05D005002 ORTHO05D006016 1.4e-16 90.1 107 44.9
Prupe.1G399400 Prunus persica HOM05D005002 ORTHO05D006016 1.4e-16 90.1 107 44.9
MSTRG.25811 Avicennia marina HOM05D005002 ORTHO05D006016 1.8e-16 89.7 127 40.9
HanXRQChr07g0195931 Helianthus annuus HOM05D005002 ORTHO05D006016 1.8e-16 89.7 124 40.3
Sc23g0006270 Simmondsia chinensis HOM05D005002 ORTHO05D006016 1.8e-16 89.7 107 43.9
TWI34G0825 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 1.8e-16 89.7 107 43.9
unitig_92.g28144 Utricularia gibba HOM05D003482 ORTHO05D004194 1.8e-16 89.7 126 39.7
RcHm_v2.0_Chr2g0161651 Rosa chinensis HOM05D005002 ORTHO05D006016 2.3e-16 89.4 124 40.3
Zm00001eb313590 Zea mays HOM05D005002 ORTHO05D006016 2.3e-16 89.4 107 44.9
ECA238G2697 Erigeron canadensis HOM05D005002 ORTHO05D006016 3.1e-16 89.0 110 41.8
MD08G1049200 Malus domestica HOM05D005002 ORTHO05D006016 3.1e-16 89.0 107 44.9
Thecc.09G010700 Theobroma cacao HOM05D005002 ORTHO05D006016 4.0e-16 88.6 107 43.9
FvH4_2g11240 Fragaria vesca HOM05D005002 ORTHO05D006016 5.2e-16 88.2 107 43.9
Lalb_Chr08g0234011 Lupinus albus HOM05D005002 ORTHO05D006016 5.2e-16 88.2 107 43.9
RcHm_v2.0_Chr6g0269591 Rosa chinensis HOM05D005002 ORTHO05D006016 5.2e-16 88.2 124 39.5
ClCG08G013890 Citrullus lanatus HOM05D005002 ORTHO05D006016 6.8e-16 87.8 124 41.1
Cc00_g22050 Coffea canephora HOM05D005002 ORTHO05D006016 6.8e-16 87.8 107 43.9
CSS0010222 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 8.9e-16 87.4 124 42.7
Eucgr.B03202 Eucalyptus grandis HOM05D005002 ORTHO05D006016 8.9e-16 87.4 107 43.9
Gohir.A07G034400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 8.9e-16 87.4 124 39.5
Gohir.D07G038000 Gossypium hirsutum HOM05D005002 ORTHO05D006016 8.9e-16 87.4 124 39.5
Gorai.001G039800 Gossypium raimondii HOM05D005002 ORTHO05D006016 8.9e-16 87.4 124 39.5
Nitab4.5_0001110g0170 Nicotiana tabacum HOM05D005002 ORTHO05D006016 8.9e-16 87.4 119 41.2
HPP92_000490 Vanilla planifolia HOM05D005002 ORTHO05D006016 8.9e-16 87.4 107 43.0
GSVIVG01023464001 Vitis vinifera HOM05D005002 ORTHO05D006016 8.9e-16 87.4 107 43.0
BcaC09g51961 Brassica carinata HOM05D005002 ORTHO05D006016 1.2e-15 87.0 107 43.9
C01p07220 Brassica napus HOM05D005002 ORTHO05D006016 1.2e-15 87.0 107 43.9
BolC1t00713H Brassica oleracea HOM05D005002 ORTHO05D006016 1.2e-15 87.0 107 43.9
CAN.G566.59 Capsicum annuum HOM05D005002 ORTHO05D006016 1.2e-15 87.0 127 38.6
CDE02G2218 Ceratophyllum demersum HOM05D002187 ORTHO05D002243 1.2e-15 87.0 100 45.0
QL01p029339 Quercus lobata HOM05D005002 ORTHO05D006016 1.2e-15 87.0 125 39.2
Actinidia03570 Actinidia chinensis HOM05D005002 ORTHO05D006016 1.5e-15 86.7 124 41.1
Aa31LG2G18620 Aethionema arabicum HOM05D005002 ORTHO05D006016 1.5e-15 86.7 107 43.0
Thhalv10026546m.g Eutrema salsugineum HOM05D005002 ORTHO05D006016 1.5e-15 86.7 107 43.9
Gohir.A05G062833 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.5e-15 86.7 124 38.7
Gohir.A05G062900 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.5e-15 86.7 124 38.7
Gohir.D05G065400 Gossypium hirsutum HOM05D005002 ORTHO05D006016 1.5e-15 86.7 124 38.7
Gorai.009G066200 Gossypium raimondii HOM05D005002 ORTHO05D006016 1.5e-15 86.7 124 38.7
Peaxi162Scf00459g00833 Petunia axillaris HOM05D005002 ORTHO05D006016 1.5e-15 86.7 107 43.9
Potri.018G013300 Populus trichocarpa HOM05D005002 ORTHO05D006016 1.5e-15 86.7 107 43.0
Solyc12g096470.2 Solanum lycopersicum HOM05D005002 ORTHO05D006016 1.5e-15 86.7 125 40.0
Sopen12g032300 Solanum pennellii HOM05D005002 ORTHO05D006016 1.5e-15 86.7 125 40.0
PGSC0003DMG400029278 Solanum tuberosum HOM05D005002 ORTHO05D006016 1.5e-15 86.7 125 40.0
PGR044G1228 Punica granatum HOM05D005002 ORTHO05D006016 2.0e-15 86.3 107 42.1
TAR622G0454 Trochodendron aralioides HOM05D005002 ORTHO05D006016 2.0e-15 86.3 107 42.1
AT4G31720 Arabidopsis thaliana HOM05D005002 ORTHO05D006016 2.6e-15 85.9 107 43.0
BcaNung05179 Brassica carinata HOM05D005002 ORTHO05D006016 2.6e-15 85.9 107 43.0
A01p06560 Brassica napus HOM05D005002 ORTHO05D006016 2.6e-15 85.9 107 43.0
BraA01t00615Z Brassica rapa HOM05D005002 ORTHO05D006016 2.6e-15 85.9 107 43.0
QL02p017669 Quercus lobata HOM05D005002 ORTHO05D006016 2.6e-15 85.9 107 42.1
Sabra18G0017200 Salix brachista HOM05D005002 ORTHO05D006016 2.6e-15 85.9 107 43.0
AL7G20310 Arabidopsis lyrata HOM05D005002 ORTHO05D006016 3.4e-15 85.5 107 42.1
BraA08t33811Z Brassica rapa HOM05D005002 ORTHO05D006016 3.4e-15 85.5 107 42.1
Sp7g29520 Schrenkiella parvula HOM05D005002 ORTHO05D006016 3.4e-15 85.5 107 42.1
Aqoxy7G00066 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 4.4e-15 85.1 107 43.9
BcaC01g01070 Brassica carinata HOM05D005002 ORTHO05D006016 4.4e-15 85.1 107 42.1
C03p87650 Brassica napus HOM05D005002 ORTHO05D006016 4.4e-15 85.1 107 42.1
Dinv03977 Davidia involucrata HOM05D005002 ORTHO05D006016 4.4e-15 85.1 124 39.5
Duzib168G1293 Durio zibethinus HOM05D005002 ORTHO05D006016 4.4e-15 85.1 124 38.7
A08p18490 Brassica napus HOM05D005002 ORTHO05D006016 5.8e-15 84.7 107 42.1
CANSAT25G2804 Cannabis sativa HOM05D005002 ORTHO05D006016 5.8e-15 84.7 121 38.8
DCAR_020711 Daucus carota HOM05D004285 ORTHO05D006016 9.9e-15 84.0 107 43.9
DCAR_020712 Daucus carota HOM05D005002 ORTHO05D006016 9.9e-15 84.0 107 43.9
GSVIVG01023467001 Vitis vinifera HOM05D005002 ORTHO05D006016 9.9e-15 84.0 107 42.1
Carub.0007s0884 Capsella rubella HOM05D005002 ORTHO05D006016 1.7e-14 83.2 107 41.1
Sed0003546 Sechium edule HOM05D005002 ORTHO05D006016 1.7e-14 83.2 107 41.1
THA.LOC104803866 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 1.7e-14 83.2 117 39.3
CBR_g30254 Chara braunii HOM05D005002 ORTHO05D006016 2.2e-14 82.8 90 47.8
THA.LOC104819944 Tarenaya hassleriana HOM05D005002 ORTHO05D006016 2.2e-14 82.8 107 41.1
Lsat_1_v5_gn_6_32161 Lactuca sativa HOM05D005002 ORTHO05D006016 2.9e-14 82.4 124 37.9
Rhsim07G0172200 Rhododendron simsii HOM05D001416 ORTHO05D005885 2.9e-14 82.4 107 42.1
Ciclev10009813m.g Citrus clementina HOM05D005002 ORTHO05D006016 4.9e-14 81.6 115 41.7
PSO478G2205 Papaver somniferum HOM05D005002 ORTHO05D006016 4.9e-14 81.6 107 40.2
PSO782G1729 Papaver somniferum HOM05D005002 ORTHO05D006016 4.9e-14 81.6 107 40.2
vmacro05092 Vaccinium macrocarpon HOM05D005002 ORTHO05D006016 4.9e-14 81.6 108 42.6
Sed0020410 Sechium edule HOM05D005002 ORTHO05D006016 6.4e-14 81.3 124 37.9
BcaB03g12714 Brassica carinata HOM05D005002 ORTHO05D006016 2.4e-13 79.3 107 40.2
FAN15G1411 Fragaria x ananassa HOM05D000348 ORTHO05D000244 3.2e-13 79.0 96 44.8
AUR62037698 Chenopodium quinoa HOM05D005002 ORTHO05D006016 4.1e-13 78.6 117 41.0
PRCOL_00006189 Prasinoderma coloniale HOM05D005002 ORTHO05D006016 4.1e-13 78.6 109 40.4
Ca_06528_v3 Cicer arietinum L. HOM05D005002 ORTHO05D006016 9.2e-13 77.4 95 46.3
FAN24G1669 Fragaria x ananassa HOM05D005002 ORTHO05D006016 9.2e-13 77.4 93 45.2
SMO356G0735 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 9.2e-13 77.4 107 37.4
CSS0031521 Camellia sinensis var. sinensis HOM05D005002 ORTHO05D006016 1.2e-12 77.0 112 42.9
SalBow4G2991 Salvia bowleyana HOM05D005002 ORTHO05D006016 1.2e-12 77.0 115 42.6
AUR62020301 Chenopodium quinoa HOM05D005002 ORTHO05D006016 1.6e-12 76.6 113 41.6
MD15G1045700 Malus domestica HOM05D005002 ORTHO05D006016 2.1e-12 76.3 127 37.8
SMO141G0065 Selaginella moellendorffii HOM05D005002 ORTHO05D006016 2.1e-12 76.3 110 37.3
Haze_18362 Corylus avellana HOM05D005002 ORTHO05D006016 2.7e-12 75.9 112 42.0
Hma1.2p1_0192F.1_g083460 Hydrangea macrophylla HOM05D005002 ORTHO05D006016 2.7e-12 75.9 95 45.3
TWI63G0754 Tripterygium wilfordii HOM05D005002 ORTHO05D006016 7.8e-12 74.3 131 34.4
Cre16.g657000 Chlamydomonas reinhardtii HOM05D005002 ORTHO05D006016 1.3e-11 73.6 133 34.6
MELO3C011321.2 Cucumis melo HOM05D005002 ORTHO05D006016 1.3e-11 73.6 112 41.1
Actinidia14152 Actinidia chinensis HOM05D005002 ORTHO05D006016 3.0e-11 72.4 112 41.1
BcaC09g51955 Brassica carinata HOM05D005002 ORTHO05D006016 1.1e-10 70.5 107 38.3
BolC3t21083H Brassica oleracea HOM05D000888 ORTHO05D000740 3.3e-10 68.9 95 41.1
Ah.09g224730 Amaranthus hybridus HOM05D005002 ORTHO05D006016 9.6e-10 67.4 131 39.7
Cfa017847 Carpinus fangiana HOM05D005002 ORTHO05D006016 3.6e-09 65.5 92 41.3
BcaC09g51957 Brassica carinata HOM05D005002 ORTHO05D006016 1.8e-08 63.2 99 45.5
COL.COLO4_21113 Corchorus olitorius HOM05D005002 ORTHO05D006016 1.5e-07 60.1 96 35.4
RcHm_v2.0_Chr2g0161711 Rosa chinensis HOM05D005002 ORTHO05D006016 7.6e-07 57.8 70 44.3
unitig_93.g30701 Utricularia gibba HOM05D005002 ORTHO05D006016 1.7e-06 56.6 70 41.4
Duzib168G1591 Durio zibethinus HOM05D005002 ORTHO05D006016 2.9e-06 55.8 70 40.0
Aqoxy7G00833 Aquilegia oxysepala HOM05D005002 ORTHO05D006016 3.8e-06 55.5 58 44.8
COL.COLO4_19003 Corchorus olitorius HOM05D005002 ORTHO05D006016 3.8e-06 55.5 72 40.3
CARHR239610 Cardamine hirsuta HOM05D005002 ORTHO05D006016 4.9e-06 55.1 74 39.2
Duzib150G1286 Durio zibethinus HOM05D005002 ORTHO05D006016 4.9e-06 55.1 72 40.3
MSTRG.9875 Avicennia marina HOM05D005002 ORTHO05D006016 6.4e-06 54.7 70 44.3


User provided reference genes

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