Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI18_g03872_MAGBIO Magnolia biondii HOM05D004349 ORTHO05D005097 8.1e-86 320.5 174 100.0
Aqoxy1G00443 Aquilegia oxysepala HOM05D004349 ORTHO05D005097 5.5e-74 281.2 166 83.7
Ciclev10012936m.g Citrus clementina HOM05D004349 ORTHO05D005097 2.7e-73 278.9 166 83.1
COL.COLO4_29437 Corchorus olitorius HOM05D004349 ORTHO05D005097 3.5e-73 278.5 166 82.5
Dinv25025 Davidia involucrata HOM05D004349 ORTHO05D005097 4.6e-73 278.1 166 81.9
CiPaw.09G026100 Carya illinoinensis HOM05D004349 ORTHO05D005097 1.0e-72 276.9 166 81.9
QL11p005722 Quercus lobata HOM05D004349 ORTHO05D005097 1.0e-72 276.9 166 81.3
Atru.chr8.1222 Acer truncatum HOM05D004349 ORTHO05D005097 1.8e-72 276.2 166 82.5
Actinidia01590 Actinidia chinensis HOM05D004349 ORTHO05D005097 1.8e-72 276.2 166 81.3
Hma1.2p1_0516F.1_g170550 Hydrangea macrophylla HOM05D004349 ORTHO05D005097 1.8e-72 276.2 166 81.3
GSVIVG01033427001 Vitis vinifera HOM05D004349 ORTHO05D005097 2.3e-72 275.8 166 82.5
Duzib093G0127 Durio zibethinus HOM05D004349 ORTHO05D005097 3.0e-72 275.4 166 81.9
Prupe.7G086000 Prunus persica HOM05D004349 ORTHO05D005097 5.1e-72 274.6 165 81.8
Gohir.D11G331900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 6.7e-72 274.2 166 80.7
Gorai.007G362800 Gossypium raimondii HOM05D004349 ORTHO05D005097 6.7e-72 274.2 166 80.7
Nn2g15821 Nelumbo nucifera HOM05D004349 ORTHO05D005097 6.7e-72 274.2 168 82.7
TWI74G1533 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 6.7e-72 274.2 166 81.3
Haze_20078 Corylus avellana HOM05D004349 ORTHO05D005097 8.7e-72 273.9 166 81.9
ECA240G0294 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.1e-71 273.5 166 82.5
Cfa020113 Carpinus fangiana HOM05D004349 ORTHO05D005097 2.5e-71 272.3 166 81.3
Sed0001935 Sechium edule HOM05D004349 ORTHO05D005097 2.5e-71 272.3 166 80.7
TWI77G0543 Tripterygium wilfordii HOM05D004349 ORTHO05D005097 2.5e-71 272.3 166 80.7
Nitab4.5_0001874g0080 Nicotiana tabacum HOM05D004349 ORTHO05D005097 3.3e-71 271.9 166 79.5
Solyc04g081430.3 Solanum lycopersicum HOM05D004349 ORTHO05D005097 5.7e-71 271.2 166 78.9
Sopen04g035040 Solanum pennellii HOM05D004349 ORTHO05D005097 5.7e-71 271.2 166 78.9
PSO528G0119 Papaver somniferum HOM05D004349 ORTHO05D005097 7.4e-71 270.8 166 81.3
QL05p072253 Quercus lobata HOM05D004349 ORTHO05D005097 9.7e-71 270.4 166 78.9
Potri.016G062800 Populus trichocarpa HOM05D004349 ORTHO05D005097 1.3e-70 270.0 166 80.7
Rhsim04G0092200 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.3e-70 270.0 166 79.5
EL10Ac2g02766 Beta vulgaris HOM05D004349 ORTHO05D005097 1.6e-70 269.6 166 78.3
Manes.08G039900 Manihot esculenta HOM05D004349 ORTHO05D005097 1.6e-70 269.6 166 80.1
Rhsim04G0092400 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.6e-70 269.6 166 78.9
Sed0019694 Sechium edule HOM05D004349 ORTHO05D005097 2.2e-70 269.2 166 80.1
FvH4_6g21430 Fragaria vesca HOM05D004349 ORTHO05D005097 2.8e-70 268.9 165 80.0
FAN05G0412 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.8e-70 268.9 165 80.0
FAN05G3233 Fragaria x ananassa HOM05D004349 ORTHO05D005097 2.8e-70 268.9 165 80.0
RcHm_v2.0_Chr4g0406251 Rosa chinensis HOM05D004349 ORTHO05D005097 2.8e-70 268.9 165 80.0
ClCG10G017820 Citrullus lanatus HOM05D004349 ORTHO05D005097 3.7e-70 268.5 166 78.3
PSO170G4263 Papaver somniferum HOM05D004349 ORTHO05D005097 3.7e-70 268.5 166 80.7
Peaxi162Scf00463g00127 Petunia axillaris HOM05D004349 ORTHO05D005097 3.7e-70 268.5 166 78.9
FAN02G1450 Fragaria x ananassa HOM05D004349 ORTHO05D005097 4.8e-70 268.1 165 80.0
Cc09_g02100 Coffea canephora HOM05D004349 ORTHO05D005097 6.3e-70 267.7 166 78.9
MELO3C009592.2 Cucumis melo HOM05D004349 ORTHO05D005097 6.3e-70 267.7 166 78.3
MD14G1049500 Malus domestica HOM05D004349 ORTHO05D005097 1.1e-69 266.9 165 80.0
SGA_v2.0_scaffold21G09532 Striga asiatica HOM05D004349 ORTHO05D005097 1.1e-69 266.9 166 81.3
MSTRG.10496 Avicennia marina HOM05D004349 ORTHO05D005097 1.4e-69 266.5 166 79.5
Glyma.07G029300 Glycine max HOM05D004349 ORTHO05D005097 1.4e-69 266.5 166 78.3
Cpa.g.sc85.16 Carica papaya HOM05D004349 ORTHO05D005097 1.8e-69 266.2 165 80.0
DCAR_018883 Daucus carota HOM05D004349 ORTHO05D005097 4.1e-69 265.0 179 75.4
MD12G1050700 Malus domestica HOM05D004349 ORTHO05D005097 6.9e-69 264.2 165 79.4
CANSAT54G2032 Cannabis sativa HOM05D004349 ORTHO05D005097 1.2e-68 263.5 165 78.8
CsaV3_7G005510 Cucumis sativus L. HOM05D004349 ORTHO05D005097 1.2e-68 263.5 166 78.3
TAR623G1044 Trochodendron aralioides HOM05D004349 ORTHO05D005097 1.5e-68 263.1 166 81.3
Migut.L01584 Erythranthe guttata HOM05D004349 ORTHO05D005097 2.6e-68 262.3 166 77.1
Glyma.08G213500 Glycine max HOM05D004349 ORTHO05D005097 4.5e-68 261.5 166 76.5
SEGI_10501 Sequoiadendron giganteum HOM05D004349 ORTHO05D005097 5.9e-68 261.2 170 73.5
Ah.13g075520 Amaranthus hybridus HOM05D004349 ORTHO05D005097 7.6e-68 260.8 166 75.9
LjContig00564g0000037 Lotus japonicus HOM05D004349 ORTHO05D005097 7.6e-68 260.8 166 76.5
FAN09G4703 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.3e-67 260.0 182 73.1
Phvul.010G156700 Phaseolus vulgaris HOM05D004349 ORTHO05D005097 1.7e-67 259.6 166 75.9
PGSC0003DMG401009863 Solanum tuberosum HOM05D004349 ORTHO05D005097 6.5e-67 257.7 183 71.0
HPP92_013495 Vanilla planifolia HOM05D004349 ORTHO05D005097 6.5e-67 257.7 168 79.2
Medtr6g471120 Medicago truncatula HOM05D004349 ORTHO05D005097 8.5e-67 257.3 166 74.7
THA.LOC104821832 Tarenaya hassleriana HOM05D004349 ORTHO05D005097 1.4e-66 256.5 166 75.9
FAN14G0676 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.9e-66 256.1 182 72.0
FAN14G3215 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.9e-66 256.1 182 72.0
Ca_01401_v3 Cicer arietinum L. HOM05D004349 ORTHO05D005097 2.5e-66 255.8 166 73.5
Medtr2g094720 Medicago truncatula HOM05D004349 ORTHO05D005097 2.5e-66 255.8 166 74.1
Psat5g280400 Pisum sativum HOM05D004349 ORTHO05D005097 2.5e-66 255.8 166 74.7
arahy.Tifrunner.gnm1.ann1.9IE653 Arachis hypogaea HOM05D004349 ORTHO05D005097 4.2e-66 255.0 165 75.2
TPR.G11586 Trifolium pratense HOM05D004349 ORTHO05D005097 4.2e-66 255.0 166 74.7
Hund26707 Selenicereus undatus HOM05D004349 ORTHO05D005097 5.5e-66 254.6 204 64.7
HPP92_026048 Vanilla planifolia HOM05D004349 ORTHO05D005097 5.5e-66 254.6 168 78.6
arahy.Tifrunner.gnm1.ann1.FMT65J Arachis hypogaea HOM05D004349 ORTHO05D005097 7.2e-66 254.2 165 74.5
TAR623G0936 Trochodendron aralioides HOM05D004349 ORTHO05D005097 9.3e-66 253.8 148 83.8
CDE02G3593 Ceratophyllum demersum HOM05D000001 ORTHO05D000424 1.2e-65 253.4 153 83.0
ECA248G3305 Erigeron canadensis HOM05D004349 ORTHO05D005097 1.2e-65 253.4 166 75.3
Aa31LG1G21860 Aethionema arabicum HOM05D004349 ORTHO05D005097 1.6e-65 253.1 166 74.1
Nitab4.5_0000571g0040 Nicotiana tabacum HOM05D004349 ORTHO05D005097 1.6e-65 253.1 189 69.3
TPR.G23269 Trifolium pratense HOM05D004349 ORTHO05D005097 2.1e-65 252.7 166 73.5
Lj2C360G6 Lonicera japonica HOM05D004349 ORTHO05D005097 3.6e-65 251.9 148 83.1
AL6G12510 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 4.6e-65 251.5 166 74.1
Sp6g39510 Schrenkiella parvula HOM05D004349 ORTHO05D005097 4.6e-65 251.5 166 74.1
Thhalv10021663m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 6.1e-65 251.1 166 73.5
Lalb_Chr23g0277751 Lupinus albus HOM05D004349 ORTHO05D005097 7.9e-65 250.8 166 74.1
Os04g0661800 Oryza sativa ssp. japonica HOM05D004349 ORTHO05D005097 7.9e-65 250.8 168 75.6
AL6G12940 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.0e-64 250.4 166 73.5
unitig_37.g12649 Utricularia gibba HOM05D006346 ORTHO05D007910 1.3e-64 250.0 166 76.5
Rhsim10G0130900 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.3e-64 249.2 212 62.7
Thhalv10014853m.g Eutrema salsugineum HOM05D004349 ORTHO05D005097 3.0e-64 248.8 166 73.5
Sabra06G0151800 Salix brachista HOM05D004349 ORTHO05D005097 5.1e-64 248.1 223 61.0
CSS0044984 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 6.7e-64 247.7 151 80.8
Carub.0006s0201 Capsella rubella HOM05D004349 ORTHO05D005097 6.7e-64 247.7 166 72.3
BcaC03g13019 Brassica carinata HOM05D004349 ORTHO05D005097 8.7e-64 247.3 166 75.3
BolC2t06089H Brassica oleracea HOM05D004349 ORTHO05D005097 8.7e-64 247.3 166 75.3
CARHR210130 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.1e-63 246.9 166 72.3
Mapoly0052s0099 Marchantia polymorpha HOM05D004349 ORTHO05D005097 1.1e-63 246.9 168 71.4
ATR0580G353 Amborella trichopoda HOM05D004349 ORTHO05D005097 1.5e-63 246.5 147 81.6
AT5G03220 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 1.5e-63 246.5 166 72.3
Thecc.05G180500 Theobroma cacao HOM05D004349 ORTHO05D005097 5.7e-63 244.6 148 80.4
Prupe.6G266300 Prunus persica HOM05D004349 ORTHO05D005097 7.4e-63 244.2 176 74.4
AUR62015286 Chenopodium quinoa HOM05D004349 ORTHO05D005097 2.8e-62 242.3 148 77.7
Lalb_Chr19g0125421 Lupinus albus HOM05D004349 ORTHO05D005097 2.8e-62 242.3 166 68.7
CARHR040500 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.7e-62 241.9 166 70.5
AT5G03500 Arabidopsis thaliana HOM05D004349 ORTHO05D005097 4.8e-62 241.5 166 71.1
Eucgr.A02508 Eucalyptus grandis HOM05D004349 ORTHO05D005097 4.8e-62 241.5 148 78.4
Lsat_1_v5_gn_1_58740 Lactuca sativa HOM05D004349 ORTHO05D005097 4.8e-62 241.5 144 82.6
arahy.Tifrunner.gnm1.ann1.2RRL5Q Arachis hypogaea HOM05D004349 ORTHO05D005097 1.4e-61 240.0 193 64.2
Gohir.A11G314900 Gossypium hirsutum HOM05D004349 ORTHO05D005097 2.0e-60 236.1 142 79.6
VMungo0331G0313 Vigna mungo HOM05D004349 ORTHO05D005097 1.7e-59 233.0 147 75.5
SHI30021 Sapria himalayana HOM05D004349 ORTHO05D005097 6.5e-59 231.1 166 66.9
Zm00001eb432780 Zea mays HOM05D004349 ORTHO05D005097 3.2e-58 228.8 169 68.6
Zm00001eb067450 Zea mays HOM05D004349 ORTHO05D005097 4.2e-58 228.4 170 65.3
vmacro17893 Vaccinium macrocarpon HOM05D004349 ORTHO05D005097 5.5e-58 228.0 237 54.0
BraA02t04750Z Brassica rapa HOM05D004349 ORTHO05D005097 1.6e-57 226.5 162 69.1
Prupe.1G181600 Prunus persica HOM05D004349 ORTHO05D005097 7.9e-57 224.2 156 75.6
HanXRQChr01g0024771 Helianthus annuus HOM05D004349 ORTHO05D005097 2.3e-56 222.6 122 91.8
Carub.0006s2456 Capsella rubella HOM05D004349 ORTHO05D005097 3.9e-56 221.9 167 73.1
BcaNung06685 Brassica carinata HOM05D004349 ORTHO05D005097 2.6e-55 219.2 153 71.9
BraA10t45308Z Brassica rapa HOM05D004349 ORTHO05D005097 1.3e-54 216.9 148 70.3
HanXRQChr03g0090511 Helianthus annuus HOM05D004349 ORTHO05D005097 1.7e-54 216.5 122 88.5
Prupe.1G547000 Prunus persica HOM05D004349 ORTHO05D005097 8.2e-54 214.2 121 88.4
Prupe.1G300700 Prunus persica HOM05D004349 ORTHO05D005097 1.1e-53 213.8 121 87.6
Prupe.7G024200 Prunus persica HOM05D004349 ORTHO05D005097 1.1e-53 213.8 121 87.6
A10p32710 Brassica napus HOM05D004349 ORTHO05D005097 2.4e-53 212.6 148 70.9
Prupe.3G021700 Prunus persica HOM05D004349 ORTHO05D005097 2.4e-53 212.6 121 86.8
C02p00910 Brassica napus HOM05D004349 ORTHO05D005097 3.1e-53 212.2 137 75.9
Prupe.1G035300 Prunus persica HOM05D004349 ORTHO05D005097 6.9e-53 211.1 123 86.2
AL3G38450 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 1.2e-52 210.3 132 78.0
SMO340G0091 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 1.5e-52 209.9 155 66.5
BolC9t60086H Brassica oleracea HOM05D004349 ORTHO05D005097 3.4e-52 208.8 169 65.1
Dinv24030 Davidia involucrata HOM05D004349 ORTHO05D005097 4.5e-52 208.4 129 83.7
Prupe.8G249100 Prunus persica HOM05D004349 ORTHO05D005097 5.9e-52 208.0 165 66.1
CAN.G311.28 Capsicum annuum HOM05D004349 ORTHO05D005097 1.4e-50 203.4 123 77.2
PGR004G2245 Punica granatum HOM05D004349 ORTHO05D005097 7.2e-50 201.1 125 74.4
arahy.Tifrunner.gnm1.ann1.UX8DIM Arachis hypogaea HOM05D004349 ORTHO05D005097 2.1e-49 199.5 165 65.5
ATR0564G039 Amborella trichopoda HOM05D004349 ORTHO05D005097 2.7e-49 199.1 149 72.5
CBR_g46752 Chara braunii HOM05D004349 ORTHO05D005097 4.7e-49 198.4 188 55.3
Sc13g0002530 Simmondsia chinensis HOM05D004349 ORTHO05D005097 8.0e-49 197.6 123 74.0
SMO358G0681 Selaginella moellendorffii HOM05D004349 ORTHO05D005097 5.2e-48 194.9 134 69.4
C09p73550 Brassica napus HOM05D004349 ORTHO05D005097 1.3e-46 190.3 147 66.7
CSS0033717 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 1.2e-44 183.7 141 68.8
RcHm_v2.0_Chr3g0478001 Rosa chinensis HOM05D004349 ORTHO05D005097 1.2e-41 173.7 106 82.1
Prupe.2G085900 Prunus persica HOM05D004349 ORTHO05D005097 5.2e-40 168.3 90 90.0
FAN05G0350 Fragaria x ananassa HOM05D004349 ORTHO05D005097 1.2e-36 157.1 94 87.2
Oeu057599.1 Olea europaea HOM05D004349 ORTHO05D005097 8.0e-33 144.4 89 74.2
Pp3c5_20850 Physcomitrium patens HOM05D004349 ORTHO05D005097 1.8e-32 143.3 112 65.2
Sabra16G0064800 Salix brachista HOM05D004349 ORTHO05D005097 1.8e-32 143.3 83 88.0
AagrBONN_evm.TU.Sc2ySwM_362.1623 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.6e-28 130.2 99 65.7
AagrBONN_evm.TU.Sc2ySwM_117.2767 Anthoceros agrestis HOM05D004349 ORTHO05D005097 1.3e-27 127.1 87 69.0
Rhsim04G0093300 Rhododendron simsii HOM05D004349 ORTHO05D005097 2.1e-25 119.8 73 84.9
RcHm_v2.0_Chr3g0478061 Rosa chinensis HOM05D004349 ORTHO05D005097 3.6e-25 119.0 103 60.2
CARHR099790 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.0e-24 117.5 82 70.7
CARHR251030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.5e-20 102.4 74 67.6
MCO10G402 Micromonas commoda HOM05D004349 ORTHO05D005097 2.1e-17 93.2 153 39.2
CARHR218030 Cardamine hirsuta HOM05D004349 ORTHO05D005097 3.6e-17 92.4 64 70.3
PRCOL_00002553 Prasinoderma coloniale HOM05D004349 ORTHO05D005097 6.1e-17 91.7 130 39.2
CARHR258920 Cardamine hirsuta HOM05D004349 ORTHO05D005097 1.4e-16 90.5 65 70.8
CSS0042444 Camellia sinensis var. sinensis HOM05D004349 ORTHO05D005097 4.0e-16 89.0 75 58.7
RcHm_v2.0_Chr3g0478211 Rosa chinensis HOM05D004349 ORTHO05D005097 2.2e-14 83.2 49 85.7
RcHm_v2.0_Chr3g0478341 Rosa chinensis HOM05D004349 ORTHO05D005097 2.2e-14 83.2 49 85.7
AL6G12900 Arabidopsis lyrata HOM05D004349 ORTHO05D005097 9.2e-13 77.8 75 50.7
RcHm_v2.0_Chr3g0478621 Rosa chinensis HOM05D004349 ORTHO05D005097 6.0e-12 75.1 108 48.1
Cre01.g062902 Chlamydomonas reinhardtii HOM05D004349 ORTHO05D005097 6.6e-11 71.6 114 36.8
Rhsim04G0093100 Rhododendron simsii HOM05D004349 ORTHO05D005097 1.2e-07 60.8 44 59.1


User provided reference genes

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