Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI14_g14176_MAGBIO Magnolia biondii HOM05D000147 ORTHO05D017181 7.4e-109 397.1 188 100.0
MBI15_g25904_MAGBIO Magnolia biondii HOM05D006958 ORTHO05D017181 1.7e-20 103.6 53 88.7
MBI13_g14846_MAGBIO Magnolia biondii HOM05D000147 ORTHO05D017181 3.8e-20 102.4 50 94.0
TAR626G1013 Trochodendron aralioides HOM05D000147 ORTHO05D004360 2.4e-19 99.8 66 69.7
HPP92_007681 Vanilla planifolia HOM05D000147 ORTHO05D004360 9.3e-19 97.8 55 81.8
arahy.Tifrunner.gnm1.ann1.BCE1C7 Arachis hypogaea HOM05D000147 ORTHO05D004360 1.2e-18 97.4 50 88.0
arahy.Tifrunner.gnm1.ann1.SNU5RG Arachis hypogaea HOM05D000147 ORTHO05D004360 1.2e-18 97.4 50 88.0
MELO3C023374.2 Cucumis melo HOM05D000147 ORTHO05D004360 1.2e-18 97.4 77 66.2
VMungo0331G2008 Vigna mungo HOM05D000147 ORTHO05D004360 1.6e-18 97.1 51 84.3
GSVIVG01017172001 Vitis vinifera HOM05D000147 ORTHO05D004360 4.6e-18 95.5 50 86.0
ClCG09G002400 Citrullus lanatus HOM05D000147 ORTHO05D004360 6.0e-18 95.1 50 90.0
Nn8g39303 Nelumbo nucifera HOM05D000147 ORTHO05D004360 6.0e-18 95.1 50 86.0
Sed0025598 Sechium edule HOM05D000147 ORTHO05D004360 6.0e-18 95.1 50 90.0
COL.COLO4_30317 Corchorus olitorius HOM05D000147 ORTHO05D004360 7.8e-18 94.7 50 84.0
TAR625G0920 Trochodendron aralioides HOM05D000147 ORTHO05D004360 7.8e-18 94.7 50 84.0
arahy.Tifrunner.gnm1.ann1.SN6IG1 Arachis hypogaea HOM05D000147 ORTHO05D004360 1.0e-17 94.4 50 84.0
CsaV3_7G032910 Cucumis sativus L. HOM05D000147 ORTHO05D004360 1.0e-17 94.4 50 90.0
Psat7g253560 Pisum sativum HOM05D000147 ORTHO05D004360 1.0e-17 94.4 50 84.0
Nn2g11852 Nelumbo nucifera HOM05D000147 ORTHO05D004360 1.3e-17 94.0 50 82.0
Phvul.010G152000 Phaseolus vulgaris HOM05D000147 ORTHO05D004360 1.3e-17 94.0 51 82.4
Glyma.07G034000 Glycine max HOM05D000147 ORTHO05D004360 2.3e-17 93.2 50 84.0
CDE04G0019 Ceratophyllum demersum HOM05D000147 ORTHO05D004360 3.9e-17 92.4 50 82.0
Glyma.08G208100 Glycine max HOM05D000147 ORTHO05D004360 3.9e-17 92.4 50 84.0
Lalb_Chr22g0351121 Lupinus albus HOM05D000147 ORTHO05D004360 3.9e-17 92.4 50 82.0
Prupe.3G075400 Prunus persica HOM05D000147 ORTHO05D004360 3.9e-17 92.4 50 82.0
PGR004G0820 Punica granatum HOM05D000147 ORTHO05D004360 3.9e-17 92.4 50 82.0
CANSAT56G2565 Cannabis sativa HOM05D000147 ORTHO05D004360 5.1e-17 92.0 50 84.0
Ca_20415_v3 Cicer arietinum L. HOM05D000147 ORTHO05D004360 5.1e-17 92.0 50 82.0
Lalb_Chr14g0373581 Lupinus albus HOM05D000147 ORTHO05D004360 5.1e-17 92.0 50 80.0
Lalb_Chr24g0395701 Lupinus albus HOM05D000147 ORTHO05D004360 6.6e-17 91.7 50 82.0
Actinidia16014 Actinidia chinensis HOM05D000147 ORTHO05D004360 8.7e-17 91.3 83 55.4
Haze_16467 Corylus avellana HOM05D000147 ORTHO05D004360 8.7e-17 91.3 48 85.4
Gohir.A09G084500 Gossypium hirsutum HOM05D000147 ORTHO05D004360 8.7e-17 91.3 50 80.0
MD17G1198800 Malus domestica HOM05D000147 ORTHO05D004360 8.7e-17 91.3 50 82.0
Actinidia01786 Actinidia chinensis HOM05D000147 ORTHO05D004360 1.1e-16 90.9 52 76.9
arahy.Tifrunner.gnm1.ann1.ZT9LNS Arachis hypogaea HOM05D000147 ORTHO05D017181 1.1e-16 90.9 53 77.4
Nitab4.5_0003848g0040 Nicotiana tabacum HOM05D000147 ORTHO05D004360 1.1e-16 90.9 50 80.0
Cpa.g.sc10.179 Carica papaya HOM05D000147 ORTHO05D004360 1.5e-16 90.5 50 84.0
Gohir.D09G084400 Gossypium hirsutum HOM05D000147 ORTHO05D004360 1.5e-16 90.5 50 80.0
Gorai.006G100400 Gossypium raimondii HOM05D000147 ORTHO05D004360 1.5e-16 90.5 50 80.0
MD09G1216700 Malus domestica HOM05D000147 ORTHO05D004360 1.5e-16 90.5 50 82.0
ATR0083G056 Amborella trichopoda HOM05D000147 ORTHO05D004360 1.9e-16 90.1 46 89.1
Aqoxy7G01890 Aquilegia oxysepala HOM05D000147 ORTHO05D004360 2.5e-16 89.7 50 80.0
Dinv30539 Davidia involucrata HOM05D000147 ORTHO05D004360 2.5e-16 89.7 50 82.0
SalBow2G0096 Salvia bowleyana HOM05D000147 ORTHO05D004360 2.5e-16 89.7 50 82.0
Cc04_g03670 Coffea canephora HOM05D000147 ORTHO05D004360 3.3e-16 89.4 50 84.0
Hma1.2p1_0682F.1_g202550 Hydrangea macrophylla HOM05D000147 ORTHO05D004360 3.3e-16 89.4 50 80.0
Thecc.06G081400 Theobroma cacao HOM05D000147 ORTHO05D004360 4.3e-16 89.0 48 81.2
TPR.G27508 Trifolium pratense HOM05D000147 ORTHO05D004360 4.3e-16 89.0 50 80.0
Rhsim12G0195600 Rhododendron simsii HOM05D000147 ORTHO05D004360 5.6e-16 88.6 50 78.0
AL2G41150 Arabidopsis lyrata HOM05D000147 ORTHO05D004360 7.3e-16 88.2 50 78.0
AT1G80350 Arabidopsis thaliana HOM05D000147 ORTHO05D004360 7.3e-16 88.2 50 78.0
BcaC03g15981 Brassica carinata HOM05D000147 ORTHO05D004360 7.3e-16 88.2 50 78.0
A02p23630 Brassica napus HOM05D000147 ORTHO05D004360 7.3e-16 88.2 50 78.0
C02p37390 Brassica napus HOM05D000147 ORTHO05D004360 7.3e-16 88.2 50 78.0
BolC2t09750H Brassica oleracea HOM05D000147 ORTHO05D004360 7.3e-16 88.2 50 78.0
BraA02t07356Z Brassica rapa HOM05D000147 ORTHO05D004360 7.3e-16 88.2 50 78.0
Carub.0002s2722 Capsella rubella HOM05D000147 ORTHO05D004360 7.3e-16 88.2 50 78.0
CAN.G395.25 Capsicum annuum HOM05D000147 ORTHO05D004360 7.3e-16 88.2 50 78.0
Thhalv10018398m.g Eutrema salsugineum HOM05D000147 ORTHO05D004360 7.3e-16 88.2 50 78.0
Os01g0683100 Oryza sativa ssp. japonica HOM05D000147 ORTHO05D004360 7.3e-16 88.2 50 78.0
Potri.001G176900 Populus trichocarpa HOM05D000147 ORTHO05D004360 7.3e-16 88.2 50 86.0
Sp5g35460 Schrenkiella parvula HOM05D000147 ORTHO05D004360 7.3e-16 88.2 50 78.0
SGA_v2.0_scaffold5G02632 Striga asiatica HOM05D000147 ORTHO05D004360 7.3e-16 88.2 51 78.4
Zm00001eb156560 Zea mays HOM05D000147 ORTHO05D004360 7.3e-16 88.2 50 78.0
Zm00001eb360490 Zea mays HOM05D000147 ORTHO05D004360 7.3e-16 88.2 50 78.0
Oeu014855.1 Olea europaea HOM05D000147 ORTHO05D004360 9.6e-16 87.8 53 81.1
Cfa002044 Carpinus fangiana HOM05D000147 ORTHO05D004360 1.3e-15 87.4 46 84.8
Migut.I00836 Erythranthe guttata HOM05D000147 ORTHO05D004360 1.3e-15 87.4 50 80.0
vmacro16937 Vaccinium macrocarpon HOM05D000147 ORTHO05D004360 1.3e-15 87.4 50 76.0
CSS0048853 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D004360 1.6e-15 87.0 50 76.0
FvH4_6g30820 Fragaria vesca HOM05D000147 ORTHO05D004360 1.6e-15 87.0 50 82.0
FAN02G1850 Fragaria x ananassa HOM05D000147 ORTHO05D004360 1.6e-15 87.0 50 82.0
FAN05G5665 Fragaria x ananassa HOM05D000147 ORTHO05D004360 1.6e-15 87.0 50 82.0
FAN09G1335 Fragaria x ananassa HOM05D000147 ORTHO05D004360 1.6e-15 87.0 50 82.0
FAN14G2580 Fragaria x ananassa HOM05D000147 ORTHO05D004360 1.6e-15 87.0 50 82.0
Oeu000438.1 Olea europaea HOM05D000147 ORTHO05D004360 1.6e-15 87.0 48 85.4
RcHm_v2.0_Chr2g0137251 Rosa chinensis HOM05D000147 ORTHO05D004360 1.6e-15 87.0 50 82.0
Sabra03G0033100 Salix brachista HOM05D000147 ORTHO05D004360 1.6e-15 87.0 50 84.0
CiPaw.02G153100 Carya illinoinensis HOM05D000147 ORTHO05D004360 2.1e-15 86.7 42 92.9
Gohir.A02G123000 Gossypium hirsutum HOM05D000147 ORTHO05D004360 2.1e-15 86.7 47 80.9
Gohir.D03G073400 Gossypium hirsutum HOM05D000147 ORTHO05D004360 2.1e-15 86.7 47 80.9
Gorai.002G057900 Gossypium raimondii HOM05D000147 ORTHO05D004360 2.1e-15 86.7 47 80.9
Manes.11G050700 Manihot esculenta HOM05D000147 ORTHO05D004360 2.1e-15 86.7 42 92.9
SGA_v2.0_scaffold37G14801 Striga asiatica HOM05D000147 ORTHO05D004360 2.1e-15 86.7 50 78.0
Eucgr.J03017 Eucalyptus grandis HOM05D000147 ORTHO05D004360 2.8e-15 86.3 44 88.6
Rhsim08G0218100 Rhododendron simsii HOM05D000147 ORTHO05D004360 2.8e-15 86.3 50 74.0
Aa31LG4G620 Aethionema arabicum HOM05D000147 ORTHO05D004360 3.6e-15 85.9 50 76.0
CARHR074160 Cardamine hirsuta HOM05D000147 ORTHO05D004360 3.6e-15 85.9 50 76.0
CiPaw.01G241300 Carya illinoinensis HOM05D000147 ORTHO05D004360 3.6e-15 85.9 48 79.2
Ciclev10025365m.g Citrus clementina HOM05D000147 ORTHO05D004360 3.6e-15 85.9 47 80.9
Medtr4g011810 Medicago truncatula HOM05D000147 ORTHO05D004360 3.6e-15 85.9 50 78.0
BcaB02g07281 Brassica carinata HOM05D000147 ORTHO05D004360 4.8e-15 85.5 50 74.0
BcaC08g45304 Brassica carinata HOM05D000147 ORTHO05D004360 8.1e-15 84.7 50 74.0
C06p29090 Brassica napus HOM05D000147 ORTHO05D004360 8.1e-15 84.7 50 74.0
BolC6t38072H Brassica oleracea HOM05D000147 ORTHO05D004360 8.1e-15 84.7 50 74.0
Lj3g0024867 Lotus japonicus HOM05D000147 ORTHO05D004360 8.1e-15 84.7 48 77.1
Manes.04G120400 Manihot esculenta HOM05D000147 ORTHO05D004360 1.4e-14 84.0 40 95.0
Actinidia08825 Actinidia chinensis HOM05D000147 ORTHO05D004360 1.8e-14 83.6 48 75.0
HanXRQChr14g0456001 Helianthus annuus HOM05D000147 ORTHO05D004360 1.8e-14 83.6 50 74.0
TWI12G0075 Tripterygium wilfordii HOM05D000147 ORTHO05D004360 1.8e-14 83.6 44 81.8
Potri.003G057800 Populus trichocarpa HOM05D000147 ORTHO05D004360 2.4e-14 83.2 48 83.3
vmacro18940 Vaccinium macrocarpon HOM05D000147 ORTHO05D004360 2.4e-14 83.2 50 72.0
EL10Ac9g21972 Beta vulgaris HOM05D000147 ORTHO05D004360 3.1e-14 82.8 48 72.9
QL05p025716 Quercus lobata HOM05D000147 ORTHO05D004360 5.3e-14 82.0 40 95.0
A07p26620 Brassica napus HOM05D000147 ORTHO05D004360 6.9e-14 81.6 50 70.0
BraA07t30305Z Brassica rapa HOM05D000147 ORTHO05D004360 6.9e-14 81.6 50 70.0
MSTRG.11097 Avicennia marina HOM05D000147 ORTHO05D004360 1.2e-13 80.9 46 80.4
BcaB05g25275 Brassica carinata HOM05D000147 ORTHO05D004360 2.0e-13 80.1 50 72.0
SMO361G0775 Selaginella moellendorffii HOM05D000147 ORTHO05D004360 2.0e-13 80.1 49 69.4
Hma1.2p1_1229F.1_g268680 Hydrangea macrophylla HOM05D000147 ORTHO05D017181 2.6e-13 79.7 50 70.0
PGSC0003DMG400016543 Solanum tuberosum HOM05D000147 ORTHO05D004360 2.6e-13 79.7 41 87.8
THA.LOC104812479 Tarenaya hassleriana HOM05D000147 ORTHO05D004360 2.6e-13 79.7 43 79.1
Lsat_1_v5_gn_5_129781 Lactuca sativa HOM05D000147 ORTHO05D004360 3.4e-13 79.3 50 68.0
Nitab4.5_0008539g0010 Nicotiana tabacum HOM05D000147 ORTHO05D004360 4.5e-13 79.0 41 85.4
Peaxi162Scf00207g00084 Petunia axillaris HOM05D000147 ORTHO05D004360 4.5e-13 79.0 41 85.4
Solyc06g066810.3 Solanum lycopersicum HOM05D000147 ORTHO05D004360 4.5e-13 79.0 40 90.0
Sopen06g025100 Solanum pennellii HOM05D000147 ORTHO05D004360 4.5e-13 79.0 40 90.0
Lsat_1_v5_gn_1_34101 Lactuca sativa HOM05D000147 ORTHO05D004360 5.8e-13 78.6 50 70.0
Lj9A505T68 Lonicera japonica HOM05D000147 ORTHO05D004360 5.8e-13 78.6 42 83.3
CSS0004467 Camellia sinensis var. sinensis HOM05D000147 ORTHO05D004360 9.9e-13 77.8 44 77.3
Mapoly0116s0028 Marchantia polymorpha HOM05D000147 ORTHO05D004360 1.3e-12 77.4 50 70.0
Hund06595 Selenicereus undatus HOM05D000147 ORTHO05D004360 2.2e-12 76.6 41 80.5
PSO017G1232 Papaver somniferum HOM05D000147 ORTHO05D004360 2.9e-12 76.3 41 80.5
PSO063G0547 Papaver somniferum HOM05D000147 ORTHO05D004360 2.9e-12 76.3 41 80.5
PSO782G0745 Papaver somniferum HOM05D000147 ORTHO05D004360 2.9e-12 76.3 41 80.5
Sc12g0009090 Simmondsia chinensis HOM05D000147 ORTHO05D004360 3.8e-12 75.9 40 82.5
HanXRQChr04g0096391 Helianthus annuus HOM05D000147 ORTHO05D004360 4.9e-12 75.5 50 66.0
ECA247G2508 Erigeron canadensis HOM05D000147 ORTHO05D004360 6.4e-12 75.1 47 72.3
DCAR_007551 Daucus carota HOM05D000147 ORTHO05D004360 8.4e-12 74.7 41 80.5
Pp3c15_10930 Physcomitrium patens HOM05D000147 ORTHO05D004360 1.1e-11 74.3 42 76.2
CBR_g38481 Chara braunii HOM05D000147 ORTHO05D004360 1.4e-11 73.9 48 72.9
VMungo1080G1096 Vigna mungo HOM05D000147 ORTHO05D004360 1.4e-11 73.9 46 71.7
Pp3c9_3800 Physcomitrium patens HOM05D000147 ORTHO05D004360 1.9e-11 73.6 41 78.0
Phvul.005G173400 Phaseolus vulgaris HOM05D000147 ORTHO05D004360 2.4e-11 73.2 53 66.0
Glyma.15G012200 Glycine max HOM05D000147 ORTHO05D004360 3.2e-11 72.8 78 52.6
Nitab4.5_0001562g0010 Nicotiana tabacum HOM05D000147 ORTHO05D004360 3.2e-11 72.8 56 58.9
Nitab4.5_0007446g0020 Nicotiana tabacum HOM05D000147 ORTHO05D004360 3.2e-11 72.8 56 58.9
AagrBONN_evm.TU.Sc2ySwM_362.2153 Anthoceros agrestis HOM05D000147 ORTHO05D004360 7.1e-11 71.6 51 64.7
MBI18_g43835_MAGBIO Magnolia biondii HOM05D001041 ORTHO05D000846 1.2e-10 70.9 34 94.1
Peaxi162Scf00207g00838 Petunia axillaris HOM05D000147 ORTHO05D004360 2.3e-09 66.6 40 70.0
Solyc11g013700.2 Solanum lycopersicum HOM05D000147 ORTHO05D004360 5.1e-09 65.5 41 61.0
AUR62011601 Chenopodium quinoa HOM05D000147 ORTHO05D004360 6.7e-09 65.1 35 80.0
AUR62016416 Chenopodium quinoa HOM05D000147 ORTHO05D004360 6.7e-09 65.1 35 80.0
Sopen11g008690 Solanum pennellii HOM05D000147 ORTHO05D004360 6.7e-09 65.1 37 67.6
Nitab4.5_0001860g0010 Nicotiana tabacum HOM05D000147 ORTHO05D004360 1.9e-08 63.5 41 63.4
PGSC0003DMG400027796 Solanum tuberosum HOM05D000147 ORTHO05D004360 1.9e-08 63.5 44 56.8
Sopen10g012360 Solanum pennellii HOM05D000147 ORTHO05D004360 3.3e-08 62.8 48 56.2
Sopen11g022070 Solanum pennellii HOM05D000147 ORTHO05D004360 3.3e-08 62.8 48 56.2
Solyc11g013635.1 Solanum lycopersicum HOM05D000147 ORTHO05D004360 4.3e-08 62.4 59 49.2
Solyc11g050880.2 Solanum lycopersicum HOM05D000147 ORTHO05D004360 7.4e-08 61.6 48 54.2
Solyc12g040520.2 Solanum lycopersicum HOM05D000147 ORTHO05D004360 7.4e-08 61.6 48 56.2
Solyc11g013570.3 Solanum lycopersicum HOM05D000147 ORTHO05D004360 2.1e-07 60.1 37 62.2
Cre10.g427600 Chlamydomonas reinhardtii HOM05D000147 ORTHO05D004360 3.7e-07 59.3 40 60.0
arahy.Tifrunner.gnm1.ann1.Z5Q04D Arachis hypogaea HOM05D000147 ORTHO05D017181 6.2e-07 58.5 47 63.8
CAN.G176.13 Capsicum annuum HOM05D006329 ORTHO05D033978 6.2e-07 58.5 48 54.2
MCO07G767 Micromonas commoda HOM05D000147 ORTHO05D004360 3.1e-06 56.2 50 50.0


User provided reference genes

Program Settings