Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI13_g34048_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 2.4e-242 841.6 406 100.0
TAR625G0669 Trochodendron aralioides HOM05D004578 ORTHO05D005529 7.8e-164 580.9 401 70.1
TAR383G0560 Trochodendron aralioides HOM05D004578 ORTHO05D005529 1.4e-160 570.1 392 69.1
MBI16_g05839_MAGBIO Magnolia biondii HOM05D004578 ORTHO05D005529 3.1e-160 568.9 401 68.8
TAR383G1032 Trochodendron aralioides HOM05D004578 ORTHO05D005529 4.0e-160 568.5 392 68.9
Aqoxy7G02848 Aquilegia oxysepala HOM05D004578 ORTHO05D005529 7.1e-157 557.8 401 65.8
PSO170G4894 Papaver somniferum HOM05D004578 ORTHO05D005529 1.6e-156 556.6 400 65.5
Nn8g40733 Nelumbo nucifera HOM05D004578 ORTHO05D005529 2.1e-156 556.2 398 68.3
PSO063G3790 Papaver somniferum HOM05D004578 ORTHO05D005529 1.1e-154 550.4 399 65.2
Potri.018G008700 Populus trichocarpa HOM05D004578 ORTHO05D005529 1.5e-154 550.1 401 65.6
Sabra06G0211200 Salix brachista HOM05D004578 ORTHO05D005529 9.5e-154 547.4 400 63.5
Potri.006G272800 Populus trichocarpa HOM05D004578 ORTHO05D005529 2.4e-152 542.7 399 64.2
QL12p025440 Quercus lobata HOM05D004578 ORTHO05D005529 8.9e-152 540.8 400 63.8
Ciclev10008459m.g Citrus clementina HOM05D004578 ORTHO05D005529 1.2e-151 540.4 400 64.0
TWI32G0020 Tripterygium wilfordii HOM05D004578 ORTHO05D005529 2.0e-151 539.7 402 63.2
Actinidia06432 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.3e-150 537.0 412 63.1
FAN15G2443 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.2e-150 536.2 398 63.6
Manes.16G134500 Manihot esculenta HOM05D004578 ORTHO05D005529 3.8e-150 535.4 395 63.3
Dinv04517 Davidia involucrata HOM05D004578 ORTHO05D005529 6.4e-150 534.6 408 63.2
Sabra18G0013200 Salix brachista HOM05D004578 ORTHO05D005529 6.4e-150 534.6 401 63.6
Sabra18G0015700 Salix brachista HOM05D004578 ORTHO05D005529 6.4e-150 534.6 401 63.6
CiPaw.07G211300 Carya illinoinensis HOM05D004578 ORTHO05D005529 8.4e-150 534.3 399 63.2
Manes.03G004800 Manihot esculenta HOM05D004578 ORTHO05D005529 8.4e-150 534.3 401 62.1
Duzib168G2341 Durio zibethinus HOM05D004578 ORTHO05D005529 1.9e-149 533.1 401 62.6
FAN27G0985 Fragaria x ananassa HOM05D004578 ORTHO05D005529 2.4e-149 532.7 398 62.6
FAN20G1103 Fragaria x ananassa HOM05D004578 ORTHO05D005529 5.4e-149 531.6 398 62.3
FvH4_2g36660 Fragaria vesca HOM05D004578 ORTHO05D005529 9.2e-149 530.8 398 62.8
Ciclev10008463m.g Citrus clementina HOM05D004578 ORTHO05D005529 4.6e-148 528.5 402 62.7
MD08G1126500 Malus domestica HOM05D004578 ORTHO05D005529 4.6e-148 528.5 401 62.1
MD15G1106400 Malus domestica HOM05D004578 ORTHO05D005529 1.3e-147 526.9 400 61.8
Peaxi162Scf00045g01734 Petunia axillaris HOM05D004578 ORTHO05D005529 1.3e-147 526.9 403 62.3
Prupe.1G458600 Prunus persica HOM05D004578 ORTHO05D005529 3.9e-147 525.4 401 61.6
Thecc.09G008600 Theobroma cacao HOM05D004578 ORTHO05D005529 1.1e-146 523.9 401 60.1
COL.COLO4_19019 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.9e-146 523.1 399 60.9
Cc00_g13120 Coffea canephora HOM05D004578 ORTHO05D005529 2.5e-146 522.7 397 64.7
Haze_21761 Corylus avellana HOM05D004578 ORTHO05D005529 3.3e-146 522.3 401 61.8
Cfa013287 Carpinus fangiana HOM05D004578 ORTHO05D005529 1.6e-145 520.0 392 62.0
Cfa013284 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.1e-145 519.6 401 61.6
Cc08_g06480 Coffea canephora HOM05D004578 ORTHO05D005529 4.7e-145 518.5 404 62.6
Prupe.1G458900 Prunus persica HOM05D004578 ORTHO05D005529 6.2e-145 518.1 406 60.3
QL12p025516 Quercus lobata HOM05D004578 ORTHO05D005529 8.1e-145 517.7 398 60.8
Eucgr.C04016 Eucalyptus grandis HOM05D004578 ORTHO05D005529 3.1e-144 515.8 399 61.4
Nitab4.5_0000555g0200 Nicotiana tabacum HOM05D004578 ORTHO05D005529 3.1e-144 515.8 404 62.9
Cpa.g.sc23.31 Carica papaya HOM05D004578 ORTHO05D005529 5.2e-144 515.0 401 60.1
CSS0030954 Camellia sinensis var. sinensis HOM05D004578 ORTHO05D005529 6.9e-144 514.6 405 61.0
vmacro18918 Vaccinium macrocarpon HOM05D004578 ORTHO05D005529 1.2e-143 513.8 404 62.1
Atru.chr7.2661 Acer truncatum HOM05D004578 ORTHO05D005529 1.5e-143 513.5 408 60.8
CiPaw.08G020700 Carya illinoinensis HOM05D004578 ORTHO05D005529 2.0e-143 513.1 399 60.7
CANSAT25G1430 Cannabis sativa HOM05D004578 ORTHO05D005529 4.4e-143 511.9 396 61.6
Migut.A00428 Erythranthe guttata HOM05D004578 ORTHO05D005529 2.2e-142 509.6 404 61.6
Eucgr.C04012 Eucalyptus grandis HOM05D004578 ORTHO05D005529 3.8e-142 508.8 400 60.8
Eucgr.C04014 Eucalyptus grandis HOM05D004578 ORTHO05D005529 2.4e-141 506.1 399 60.9
Gohir.A06G104800 Gossypium hirsutum HOM05D004578 ORTHO05D005529 3.2e-141 505.8 401 59.4
Gohir.D06G107000 Gossypium hirsutum HOM05D004578 ORTHO05D005529 7.1e-141 504.6 401 59.4
Gorai.010G121600 Gossypium raimondii HOM05D004578 ORTHO05D005529 7.1e-141 504.6 401 59.1
CAN.G673.19 Capsicum annuum HOM05D004578 ORTHO05D005529 1.2e-140 503.8 403 60.3
DCAR_000687 Daucus carota HOM05D004578 ORTHO05D005529 1.6e-140 503.4 400 60.2
Lj7P748T39 Lonicera japonica HOM05D004578 ORTHO05D005529 1.6e-140 503.4 386 62.7
A04p18950 Brassica napus HOM05D004578 ORTHO05D005529 2.1e-140 503.1 406 59.4
BolC4t26970H Brassica oleracea HOM05D004578 ORTHO05D005529 2.1e-140 503.1 406 59.4
BraA04t17495Z Brassica rapa HOM05D004578 ORTHO05D005529 2.7e-140 502.7 406 59.4
THA.LOC104819936 Tarenaya hassleriana HOM05D004578 ORTHO05D005529 4.6e-140 501.9 406 58.9
BcaC02g08438 Brassica carinata HOM05D004578 ORTHO05D005529 6.0e-140 501.5 406 59.1
C04p54190 Brassica napus HOM05D004578 ORTHO05D005529 6.0e-140 501.5 406 59.1
Aa31sc715G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 1.3e-139 500.4 406 59.1
Sp4g03570 Schrenkiella parvula HOM05D004578 ORTHO05D005529 1.7e-139 500.0 407 59.2
Cfa013283 Carpinus fangiana HOM05D004578 ORTHO05D005529 2.3e-139 499.6 387 61.0
Carub.0004s0400 Capsella rubella HOM05D004578 ORTHO05D005529 6.6e-139 498.0 407 59.0
BcaB06g27986 Brassica carinata HOM05D004578 ORTHO05D005529 2.5e-138 496.1 400 59.5
Lsat_1_v5_gn_9_4341 Lactuca sativa HOM05D004578 ORTHO05D005529 3.3e-138 495.7 408 58.8
Aa31sc160G30 Aethionema arabicum HOM05D004578 ORTHO05D005529 4.3e-138 495.4 406 58.9
Sopen08g002370 Solanum pennellii HOM05D004578 ORTHO05D005529 4.3e-138 495.4 398 59.3
AL4G15160 Arabidopsis lyrata HOM05D004578 ORTHO05D005529 7.3e-138 494.6 406 58.9
AT2G24580 Arabidopsis thaliana HOM05D004578 ORTHO05D005529 9.6e-138 494.2 407 58.7
PGSC0003DMG400026320 Solanum tuberosum HOM05D004578 ORTHO05D005529 9.6e-138 494.2 395 59.5
Solyc08g006430.4 Solanum lycopersicum HOM05D004578 ORTHO05D005529 1.6e-137 493.4 398 59.0
Nitab4.5_0004131g0050 Nicotiana tabacum HOM05D004578 ORTHO05D005529 2.1e-137 493.0 386 61.7
CARHR117360 Cardamine hirsuta HOM05D004578 ORTHO05D005529 2.8e-137 492.7 399 59.6
Thhalv10000150m.g Eutrema salsugineum HOM05D004578 ORTHO05D005529 4.8e-137 491.9 406 58.9
Rhsim10G0084800 Rhododendron simsii HOM05D004578 ORTHO05D005529 6.2e-137 491.5 387 60.5
RcHm_v2.0_Chr6g0305131 Rosa chinensis HOM05D004578 ORTHO05D005529 8.1e-137 491.1 397 59.4
SGA_v2.0_scaffold193G40672 Striga asiatica HOM05D004578 ORTHO05D005529 1.1e-136 490.7 404 58.4
ClCG05G026450 Citrullus lanatus HOM05D004578 ORTHO05D005529 1.4e-136 490.3 399 57.9
CsaV3_3G047160 Cucumis sativus L. HOM05D004578 ORTHO05D005529 3.1e-136 489.2 399 57.6
SalBow4G0906 Salvia bowleyana HOM05D004578 ORTHO05D005529 5.8e-135 485.0 395 59.5
PGR044G1507 Punica granatum HOM05D004578 ORTHO05D005529 2.2e-134 483.0 397 57.7
AUR62037713 Chenopodium quinoa HOM05D004578 ORTHO05D005529 4.9e-134 481.9 399 57.4
CDE02G4459 Ceratophyllum demersum HOM05D004578 ORTHO05D005529 6.4e-134 481.5 390 59.2
AUR62020290 Chenopodium quinoa HOM05D004578 ORTHO05D005529 8.4e-134 481.1 399 57.6
MELO3C003620.2 Cucumis melo HOM05D004578 ORTHO05D005529 8.4e-134 481.1 399 56.9
HanXRQChr15g0466441 Helianthus annuus HOM05D004578 ORTHO05D005529 8.4e-134 481.1 407 56.3
EL10Ac2g02417 Beta vulgaris HOM05D004578 ORTHO05D005529 4.2e-133 478.8 403 57.1
Medtr3g108990 Medicago truncatula HOM05D004578 ORTHO05D005529 9.3e-133 477.6 395 56.2
Sc07g0007360 Simmondsia chinensis HOM05D004578 ORTHO05D005529 2.7e-132 476.1 405 56.0
Ah.13g067790 Amaranthus hybridus HOM05D004578 ORTHO05D005529 1.0e-131 474.2 402 57.2
Hund13109 Selenicereus undatus HOM05D004578 ORTHO05D005529 1.0e-131 474.2 405 57.0
TPR.G12360 Trifolium pratense HOM05D004578 ORTHO05D005529 5.1e-131 471.9 390 56.9
VMungo1309G1783 Vigna mungo HOM05D004578 ORTHO05D005529 3.3e-130 469.2 395 54.9
Phvul.009G102000 Phaseolus vulgaris HOM05D004578 ORTHO05D005529 1.6e-129 466.8 395 54.7
MSTRG.25795 Avicennia marina HOM05D004578 ORTHO05D005529 2.8e-129 466.1 397 58.7
ECA247G3559 Erigeron canadensis HOM05D004578 ORTHO05D005529 2.8e-129 466.1 416 54.3
Sed0023873 Sechium edule HOM05D004578 ORTHO05D005529 1.1e-128 464.2 400 56.0
Ca_15651_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 3.1e-128 462.6 392 55.6
Ca_15659_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 3.1e-128 462.6 392 55.6
unitig_32.g11237 Utricularia gibba HOM05D004578 ORTHO05D005529 4.0e-128 462.2 394 58.4
BcaC02g08437 Brassica carinata HOM05D004578 ORTHO05D005529 9.0e-128 461.1 405 56.0
Glyma.04G076300 Glycine max HOM05D004578 ORTHO05D005529 1.3e-126 457.2 395 54.4
Medtr3g109010 Medicago truncatula HOM05D004578 ORTHO05D005529 3.8e-126 455.7 392 55.4
arahy.Tifrunner.gnm1.ann1.W2ETIH Arachis hypogaea HOM05D004578 ORTHO05D005529 4.9e-126 455.3 395 54.7
HanXRQChr10g0282951 Helianthus annuus HOM05D004578 ORTHO05D005529 1.1e-125 454.1 408 54.4
arahy.Tifrunner.gnm1.ann1.M0AD1K Arachis hypogaea HOM05D004578 ORTHO05D005529 3.2e-125 452.6 395 54.2
Lj1g0024454 Lotus japonicus HOM05D004578 ORTHO05D005529 1.6e-124 450.3 393 53.7
Ca_15652_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 7.9e-124 448.0 382 55.2
Ca_15660_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 7.9e-124 448.0 382 55.2
Os09g0498500 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 1.8e-123 446.8 404 53.7
Prupe.1G458800 Prunus persica HOM05D004578 ORTHO05D005529 3.9e-123 445.7 404 55.7
Zm00001eb317190 Zea mays HOM05D004578 ORTHO05D005529 5.1e-123 445.3 399 53.4
ATR0626G173 Amborella trichopoda HOM05D004578 ORTHO05D005529 1.5e-122 443.7 406 54.7
TPR.G12429 Trifolium pratense HOM05D004578 ORTHO05D005529 1.5e-122 443.7 395 52.9
Actinidia22261 Actinidia chinensis HOM05D004578 ORTHO05D005529 6.2e-121 438.3 411 55.0
Os01g0316100 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 3.1e-120 436.0 396 53.5
Psat5g024080 Pisum sativum HOM05D004578 ORTHO05D005529 8.4e-118 427.9 395 51.4
Zm00001eb127180 Zea mays HOM05D004578 ORTHO05D005529 2.7e-116 422.9 395 53.9
SEGI_11947 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 1.0e-115 421.0 408 51.0
SEGI_31206 Sequoiadendron giganteum HOM05D004578 ORTHO05D005529 2.3e-115 419.9 408 49.5
Zm00001eb340420 Zea mays HOM05D004578 ORTHO05D005529 6.9e-112 408.3 393 51.9
Os12g0543600 Oryza sativa ssp. japonica HOM05D004578 ORTHO05D005529 8.5e-110 401.4 380 51.3
Lalb_Chr11g0064181 Lupinus albus HOM05D004578 ORTHO05D005529 1.1e-109 401.0 395 49.9
Zm00001eb140430 Zea mays HOM05D004578 ORTHO05D005529 5.0e-102 375.6 401 49.4
Mapoly0152s0014 Marchantia polymorpha HOM05D004578 ORTHO05D005529 8.8e-99 364.8 409 46.5
SMO115G0125 Selaginella moellendorffii HOM05D004578 ORTHO05D005529 7.0e-96 355.1 400 44.2
Pp3c9_3640 Physcomitrium patens HOM05D004578 ORTHO05D005529 1.7e-94 350.5 400 45.0
AagrBONN_evm.TU.Sc2ySwM_368.3376 Anthoceros agrestis HOM05D004578 ORTHO05D005529 1.1e-93 347.8 385 45.2
Gohir.D06G106866 Gossypium hirsutum HOM05D004578 ORTHO05D005529 8.5e-78 295.0 361 44.3
Oeu008773.1 Olea europaea HOM05D004578 ORTHO05D005529 2.5e-77 293.5 396 42.4
HPP92_017393 Vanilla planifolia HOM05D004578 ORTHO05D005529 4.2e-77 292.7 391 42.2
Psat5g025320 Pisum sativum HOM05D004578 ORTHO05D005529 7.2e-77 292.0 259 54.8
Oeu018556.1 Olea europaea HOM05D004578 ORTHO05D005529 4.4e-74 282.7 404 41.1
GSVIVG01033177001 Vitis vinifera HOM05D004578 ORTHO05D005529 1.6e-71 274.2 401 39.2
Gorai.010G121400 Gossypium raimondii HOM05D004578 ORTHO05D005529 2.7e-71 273.5 295 46.1
Hma1.2p1_1588F.1_g292320 Hydrangea macrophylla HOM05D004578 ORTHO05D005529 5.9e-71 272.3 400 41.0
PRCOL_00000645 Prasinoderma coloniale HOM05D004578 ORTHO05D005529 6.1e-60 235.7 435 33.6
unitig_32.g11239 Utricularia gibba HOM05D004578 ORTHO05D005529 5.8e-58 229.2 187 60.4
Cfa013285 Carpinus fangiana HOM05D004578 ORTHO05D005529 6.6e-54 215.7 231 47.6
Lalb_Chr23g0269171 Lupinus albus HOM05D004578 ORTHO05D005529 2.7e-47 193.7 160 56.2
HanXRQChr10g0282961 Helianthus annuus HOM05D004578 ORTHO05D005529 7.8e-39 165.6 155 54.2
Ca_28680_v3 Cicer arietinum L. HOM05D004578 ORTHO05D005529 9.9e-34 148.7 390 27.9
unitig_32.g11238 Utricularia gibba HOM05D004578 ORTHO05D005529 2.3e-30 137.5 110 65.5
Cc08_g06580 Coffea canephora HOM05D004578 ORTHO05D005529 9.6e-29 132.1 113 57.5
Actinidia22262 Actinidia chinensis HOM05D004578 ORTHO05D005529 1.4e-27 128.3 323 29.1
Cre12.g493500 Chlamydomonas reinhardtii HOM05D004578 ORTHO05D005529 1.9e-24 117.9 409 27.4
TPR.G12332 Trifolium pratense HOM05D004578 ORTHO05D005529 4.2e-24 116.7 81 61.7
COL.COLO4_30024 Corchorus olitorius HOM05D004578 ORTHO05D005529 1.5e-10 71.6 40 77.5
Psat2g052560 Pisum sativum HOM05D004790 ORTHO05D005678 2.5e-08 64.3 51 47.1
Cpa.g.sc6.99 Carica papaya HOM05D005694 ORTHO05D007402 3.2e-08 63.9 403 23.1
TAR625G0317 Trochodendron aralioides HOM05D005694 ORTHO05D007402 4.2e-08 63.5 417 25.7
Lsat_1_v5_gn_3_88661 Lactuca sativa HOM05D005694 ORTHO05D007402 2.7e-07 60.8 397 25.4
Oeu037163.1 Olea europaea HOM05D005694 ORTHO05D007402 2.7e-07 60.8 407 26.3
Gorai.007G218000 Gossypium raimondii HOM05D005694 ORTHO05D007402 3.5e-07 60.5 419 23.6
Cfa004061 Carpinus fangiana HOM05D005694 ORTHO05D007402 6.0e-07 59.7 426 23.7
BcaC05g29844 Brassica carinata HOM05D005694 ORTHO05D007402 2.3e-06 57.8 399 25.1
BolC5t34672H Brassica oleracea HOM05D005694 ORTHO05D007402 2.3e-06 57.8 399 25.1
CANSAT25G2140 Cannabis sativa HOM05D005694 ORTHO05D007402 3.0e-06 57.4 414 23.4
CANSAT25G0291 Cannabis sativa HOM05D005694 ORTHO05D007402 5.1e-06 56.6 414 23.2


User provided reference genes

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