Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI13_g08984_MAGBIO Magnolia biondii HOM05D004351 ORTHO05D005196 4.1e-54 214.5 114 100.0
MBI13_g09228_MAGBIO Magnolia biondii HOM05D004351 ORTHO05D005196 1.5e-40 169.5 111 81.1
Dinv36161 Davidia involucrata HOM05D004351 ORTHO05D005196 1.5e-16 89.7 89 52.8
Thecc.09G247500 Theobroma cacao HOM05D004351 ORTHO05D005196 2.6e-16 89.0 84 56.0
Haze_23254 Corylus avellana HOM05D004351 ORTHO05D005196 9.9e-16 87.0 83 59.0
PSO339G1418 Papaver somniferum HOM05D004351 ORTHO05D005196 2.9e-15 85.5 80 60.0
Manes.02G136500 Manihot esculenta HOM05D004351 ORTHO05D005196 6.4e-15 84.3 77 58.4
Dinv15025 Davidia involucrata HOM05D004351 ORTHO05D005196 1.1e-14 83.6 76 60.5
COL.COLO4_24484 Corchorus olitorius HOM05D004351 ORTHO05D005196 1.4e-14 83.2 77 57.1
Potri.001G273400 Populus trichocarpa HOM05D004351 ORTHO05D005196 1.4e-14 83.2 78 55.1
Cfa009891 Carpinus fangiana HOM05D004351 ORTHO05D005196 3.2e-14 82.0 90 50.0
Nn7g36761 Nelumbo nucifera HOM05D004351 ORTHO05D005196 3.2e-14 82.0 91 53.8
AUR62006553 Chenopodium quinoa HOM05D004351 ORTHO05D005196 4.2e-14 81.6 78 52.6
Duzib168G2208 Durio zibethinus HOM05D004351 ORTHO05D005196 4.2e-14 81.6 78 57.7
Actinidia06976 Actinidia chinensis HOM05D004351 ORTHO05D005196 5.4e-14 81.3 89 49.4
Cfa009892 Carpinus fangiana HOM05D004351 ORTHO05D005196 5.4e-14 81.3 89 48.3
Eucgr.J00682 Eucalyptus grandis HOM05D004351 ORTHO05D005196 5.4e-14 81.3 98 53.1
Gohir.D07G123400 Gossypium hirsutum HOM05D004351 ORTHO05D005196 5.4e-14 81.3 82 52.4
Gorai.001G133200 Gossypium raimondii HOM05D004351 ORTHO05D005196 5.4e-14 81.3 82 52.4
Hma1.2p1_0460F.1_g157460 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 5.4e-14 81.3 82 54.9
Lj2C622G21 Lonicera japonica HOM05D004351 ORTHO05D005196 7.1e-14 80.9 73 58.9
CSS0023003 Camellia sinensis var. sinensis HOM05D004351 ORTHO05D005196 9.3e-14 80.5 87 51.7
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 9.3e-14 80.5 75 56.0
Prupe.4G264000 Prunus persica HOM05D004351 ORTHO05D005196 9.3e-14 80.5 81 54.3
QL05p016402 Quercus lobata HOM05D004351 ORTHO05D005196 1.2e-13 80.1 76 53.9
QL01p016827 Quercus lobata HOM05D004351 ORTHO05D005196 1.6e-13 79.7 68 55.9
PGR119G2369 Punica granatum HOM05D004351 ORTHO05D005196 2.1e-13 79.3 51 74.5
TAR633G2420 Trochodendron aralioides HOM05D004351 ORTHO05D005196 3.5e-13 78.6 77 58.4
Ca_06202_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 4.6e-13 78.2 79 54.4
Ca_06205_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 4.6e-13 78.2 79 54.4
Medtr5g089280 Medicago truncatula HOM05D004351 ORTHO05D005196 4.6e-13 78.2 80 51.2
Sabra09G0050700 Salix brachista HOM05D004351 ORTHO05D005196 4.6e-13 78.2 75 57.3
TPR.G16412 Trifolium pratense HOM05D004351 ORTHO05D005196 4.6e-13 78.2 75 56.0
Potri.009G067700 Populus trichocarpa HOM05D004351 ORTHO05D005196 6.0e-13 77.8 62 62.9
RcHm_v2.0_Chr5g0050371 Rosa chinensis HOM05D004351 ORTHO05D005196 6.0e-13 77.8 82 51.2
TAR636G1014 Trochodendron aralioides HOM05D004351 ORTHO05D005196 6.0e-13 77.8 71 59.2
Psat0s4007g0120 Pisum sativum HOM05D004351 ORTHO05D005196 1.0e-12 77.0 51 68.6
Psat0s6670g0080 Pisum sativum HOM05D004351 ORTHO05D005196 1.0e-12 77.0 51 68.6
ClCG02G022760 Citrullus lanatus HOM05D004351 ORTHO05D005196 1.8e-12 76.3 82 53.7
Actinidia24469 Actinidia chinensis HOM05D004351 ORTHO05D005196 2.3e-12 75.9 89 47.2
Rhsim13G0210300 Rhododendron simsii HOM05D004351 ORTHO05D005196 3.0e-12 75.5 81 51.9
unitig_62.g23874 Utricularia gibba HOM05D004351 ORTHO05D005196 3.0e-12 75.5 77 54.5
TPR.G16392 Trifolium pratense HOM05D004351 ORTHO05D005196 3.9e-12 75.1 83 49.4
Gohir.A07G119100 Gossypium hirsutum HOM05D004351 ORTHO05D005196 5.1e-12 74.7 86 47.7
Hund21970 Selenicereus undatus HOM05D004351 ORTHO05D005196 5.1e-12 74.7 82 56.1
TWI31G0625 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 5.1e-12 74.7 78 55.1
MELO3C014554.2 Cucumis melo HOM05D004351 ORTHO05D005196 6.7e-12 74.3 106 47.2
Rhsim13G0207700 Rhododendron simsii HOM05D004351 ORTHO05D005196 6.7e-12 74.3 51 70.6
GSVIVG01037327001 Vitis vinifera HOM05D004351 ORTHO05D005196 6.7e-12 74.3 86 50.0
Psat6g063400 Pisum sativum HOM05D013666 ORTHO05D015141 8.7e-12 73.9 51 66.7
Prupe.4G264100 Prunus persica HOM05D004351 ORTHO05D005196 8.7e-12 73.9 81 53.1
CsaV3_6G038890 Cucumis sativus L. HOM05D004351 ORTHO05D005196 1.1e-11 73.6 76 56.6
Migut.D00673 Erythranthe guttata HOM05D004351 ORTHO05D005196 1.1e-11 73.6 78 53.8
HanXRQChr13g0418801 Helianthus annuus HOM05D004351 ORTHO05D005196 1.1e-11 73.6 75 56.0
Sc09g0001080 Simmondsia chinensis HOM05D004351 ORTHO05D005196 1.1e-11 73.6 79 55.7
SGA_v2.0_scaffold8G04539 Striga asiatica HOM05D004351 ORTHO05D005196 1.1e-11 73.6 76 55.3
TWI79G1476 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 1.1e-11 73.6 83 49.4
Medtr5g089200 Medicago truncatula HOM05D004351 ORTHO05D005196 1.5e-11 73.2 79 51.9
Oeu013460.1 Olea europaea HOM05D004351 ORTHO05D005196 1.5e-11 73.2 52 67.3
MSTRG.18468 Avicennia marina HOM05D004351 ORTHO05D005196 1.9e-11 72.8 85 52.9
Aa31LG3G15030 Aethionema arabicum HOM05D004351 ORTHO05D005196 2.5e-11 72.4 82 50.0
Lj2A623G23 Lonicera japonica HOM05D004351 ORTHO05D005196 2.5e-11 72.4 51 70.6
PGR119G0622 Punica granatum HOM05D004351 ORTHO05D005196 2.5e-11 72.4 87 47.1
Solyc11g064920.2 Solanum lycopersicum HOM05D004351 ORTHO05D005196 2.5e-11 72.4 81 51.9
Sopen11g024720 Solanum pennellii HOM05D004351 ORTHO05D005196 2.5e-11 72.4 79 53.2
Thhalv10013212m.g Eutrema salsugineum HOM05D004351 ORTHO05D005196 3.3e-11 72.0 78 57.7
Ciclev10014772m.g Citrus clementina HOM05D004351 ORTHO05D005196 4.3e-11 71.6 87 48.3
Lalb_Chr17g0347771 Lupinus albus HOM05D004351 ORTHO05D005196 4.3e-11 71.6 91 41.8
TPR.G16403 Trifolium pratense HOM05D004351 ORTHO05D005196 4.3e-11 71.6 79 48.1
A10p25600 Brassica napus HOM05D004351 ORTHO05D005196 5.6e-11 71.2 45 73.3
BraA10t44627Z Brassica rapa HOM05D004351 ORTHO05D005196 5.6e-11 71.2 45 73.3
CiPaw.14G111600 Carya illinoinensis HOM05D004351 ORTHO05D005196 5.6e-11 71.2 76 51.3
LjContig00564g0010016 Lotus japonicus HOM05D004351 ORTHO05D005196 5.6e-11 71.2 51 66.7
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 7.4e-11 70.9 52 65.4
Atru.chr3.3000 Acer truncatum HOM05D004351 ORTHO05D005196 9.6e-11 70.5 77 50.6
SalBow6G0501 Salvia bowleyana HOM05D004351 ORTHO05D005196 9.6e-11 70.5 77 54.5
Cpa.g.sc34.180 Carica papaya HOM05D004351 ORTHO05D005196 1.3e-10 70.1 79 50.6
LjContig00564g0001423 Lotus japonicus HOM05D004351 ORTHO05D005196 1.3e-10 70.1 51 64.7
Aqoxy2G00403 Aquilegia oxysepala HOM05D004351 ORTHO05D005196 1.6e-10 69.7 63 61.9
Lsat_1_v5_gn_3_110020 Lactuca sativa HOM05D004351 ORTHO05D005196 1.6e-10 69.7 77 55.8
Nitab4.5_0009266g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 1.6e-10 69.7 84 51.2
Sp6g31440 Schrenkiella parvula HOM05D004351 ORTHO05D005196 1.6e-10 69.7 82 53.7
AL6G22990 Arabidopsis lyrata HOM05D004351 ORTHO05D005196 2.1e-10 69.3 82 53.7
Nitab4.5_0006764g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 2.1e-10 69.3 84 51.2
Psat2g020840 Pisum sativum HOM05D004351 ORTHO05D005196 2.1e-10 69.3 77 49.4
THA.LOC104811202 Tarenaya hassleriana HOM05D004351 ORTHO05D005196 2.1e-10 69.3 76 52.6
CiPaw.13G149200 Carya illinoinensis HOM05D004351 ORTHO05D005196 2.8e-10 68.9 92 48.9
Ah.06g194690 Amaranthus hybridus HOM05D004351 ORTHO05D005196 3.6e-10 68.6 78 51.3
HPP92_018205 Vanilla planifolia HOM05D004351 ORTHO05D005196 4.8e-10 68.2 71 53.5
Carub.0006s1070 Capsella rubella HOM05D004351 ORTHO05D005196 6.2e-10 67.8 72 54.2
AT5G12200 Arabidopsis thaliana HOM05D004351 ORTHO05D005196 8.1e-10 67.4 82 48.8
C09p64690 Brassica napus HOM05D004351 ORTHO05D005196 8.1e-10 67.4 38 78.9
CAN.G468.6 Capsicum annuum HOM05D004351 ORTHO05D005196 8.1e-10 67.4 79 50.6
Cc00_g05700 Coffea canephora HOM05D004351 ORTHO05D005196 8.1e-10 67.4 50 68.0
Peaxi162Scf00004g04314 Petunia axillaris HOM05D004351 ORTHO05D005196 8.1e-10 67.4 49 73.5
BcaNung06879 Brassica carinata HOM05D004351 ORTHO05D005196 1.1e-09 67.0 87 49.4
CARHR200920 Cardamine hirsuta HOM05D004351 ORTHO05D005196 1.1e-09 67.0 80 50.0
LjContig00564g0013946 Lotus japonicus HOM05D004351 ORTHO05D005196 1.1e-09 67.0 63 57.1
MD03G1164800 Malus domestica HOM05D004351 ORTHO05D005196 1.1e-09 67.0 85 48.2
Sed0012563 Sechium edule HOM05D004351 ORTHO05D005196 1.1e-09 67.0 94 46.8
VMungo0647G2253 Vigna mungo HOM05D004351 ORTHO05D005196 1.1e-09 67.0 80 42.5
VMungo0540G1132 Vigna mungo HOM05D004351 ORTHO05D005196 1.4e-09 66.6 84 48.8
Phvul.008G202200 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 1.8e-09 66.2 35 77.1
Sed0017489 Sechium edule HOM05D004351 ORTHO05D005196 2.4e-09 65.9 94 45.7
CDE09G1005 Ceratophyllum demersum HOM05D004351 ORTHO05D005196 3.1e-09 65.5 70 52.9
DCAR_023830 Daucus carota HOM05D004351 ORTHO05D005196 3.1e-09 65.5 45 66.7
ATR1096G054 Amborella trichopoda HOM05D004351 ORTHO05D005196 4.0e-09 65.1 34 88.2
arahy.Tifrunner.gnm1.ann1.3AG2SN Arachis hypogaea HOM05D004351 ORTHO05D005196 4.0e-09 65.1 42 69.0
arahy.Tifrunner.gnm1.ann1.A6ZB5M Arachis hypogaea HOM05D004351 ORTHO05D005196 4.0e-09 65.1 42 69.0
FvH4_3g27770 Fragaria vesca HOM05D004351 ORTHO05D005196 4.0e-09 65.1 35 80.0
FAN21G2561 Fragaria x ananassa HOM05D004351 ORTHO05D005196 4.0e-09 65.1 35 80.0
Glyma.15G055500 Glycine max HOM05D004351 ORTHO05D005196 4.0e-09 65.1 38 73.7
Phvul.006G204400 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 4.0e-09 65.1 84 47.6
Glyma.02G278600 Glycine max HOM05D004351 ORTHO05D005196 9.0e-09 63.9 73 45.2
CANSAT80G2609 Cannabis sativa HOM05D004351 ORTHO05D005196 1.2e-08 63.5 77 49.4
Eucgr.J00683 Eucalyptus grandis HOM05D004351 ORTHO05D005196 1.5e-08 63.2 53 62.3
Cc00_g05720 Coffea canephora HOM05D004351 ORTHO05D005196 2.0e-08 62.8 79 48.1
Gohir.A08G010200 Gossypium hirsutum HOM05D004351 ORTHO05D005196 2.0e-08 62.8 80 51.2
Glyma.08G177502 Glycine max HOM05D004351 ORTHO05D005196 2.6e-08 62.4 38 73.7
SEGI_39462 Sequoiadendron giganteum HOM05D004351 ORTHO05D005196 2.6e-08 62.4 80 50.0
Glyma.14G036000 Glycine max HOM05D004351 ORTHO05D005196 7.6e-08 60.8 89 43.8
Gohir.D08G020300 Gossypium hirsutum HOM05D004351 ORTHO05D005196 7.6e-08 60.8 35 80.0
Zm00001eb150370 Zea mays HOM05D004351 ORTHO05D005196 7.6e-08 60.8 49 61.2
EL10Ac4g10103 Beta vulgaris HOM05D004351 ORTHO05D005196 1.3e-07 60.1 74 47.3
FAN11G3899 Fragaria x ananassa HOM05D004351 ORTHO05D005196 1.3e-07 60.1 34 73.5
Os01g0807900 Oryza sativa ssp. japonica HOM05D004351 ORTHO05D005196 1.9e-06 56.2 34 73.5


User provided reference genes

Program Settings