Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI13_g05964_MAGBIO Magnolia biondii HOM05D001047 ORTHO05D000768 4.7e-57 224.6 136 100.0
MBI13_g09073_MAGBIO Magnolia biondii HOM05D001047 ORTHO05D000768 8.1e-57 223.8 118 100.0
Duzib150G1532 Durio zibethinus HOM05D001047 ORTHO05D000768 8.2e-25 117.5 122 56.6
Thecc.09G067200 Theobroma cacao HOM05D001047 ORTHO05D000768 4.5e-23 111.7 122 54.9
Gohir.D07G018200 Gossypium hirsutum HOM05D001047 ORTHO05D000768 1.7e-22 109.8 122 54.9
Gorai.001G018800 Gossypium raimondii HOM05D001047 ORTHO05D000768 1.7e-22 109.8 122 54.9
Gohir.A07G018400 Gossypium hirsutum HOM05D001047 ORTHO05D000768 2.5e-21 105.9 122 54.1
Gohir.D05G039000 Gossypium hirsutum HOM05D001047 ORTHO05D000768 4.2e-21 105.1 124 53.2
Gorai.009G039500 Gossypium raimondii HOM05D001047 ORTHO05D000768 4.2e-21 105.1 124 53.2
Gohir.A05G037500 Gossypium hirsutum HOM05D001047 ORTHO05D000768 3.6e-20 102.1 124 52.4
Duzib168G0163 Durio zibethinus HOM05D001047 ORTHO05D000768 2.5e-18 95.9 110 53.6
Atru.chr7.1808 Acer truncatum HOM05D001047 ORTHO05D000768 5.7e-18 94.7 122 53.3
PGR142G0155 Punica granatum HOM05D001047 ORTHO05D000768 5.7e-18 94.7 72 73.6
Manes.16G088300 Manihot esculenta HOM05D001047 ORTHO05D000768 1.7e-17 93.2 124 53.2
Potri.006G217200 Populus trichocarpa HOM05D001047 ORTHO05D000768 6.3e-17 91.3 114 52.6
Sabra06G0167500 Salix brachista HOM05D001047 ORTHO05D000768 6.3e-17 91.3 121 52.1
MD15G1225800 Malus domestica HOM05D001047 ORTHO05D000768 8.2e-17 90.9 116 49.1
Eucgr.C00753 Eucalyptus grandis HOM05D001047 ORTHO05D000768 1.8e-16 89.7 101 56.4
FvH4_1g09690 Fragaria vesca HOM05D001047 ORTHO05D000768 1.8e-16 89.7 114 46.5
FAN26G1269 Fragaria x ananassa HOM05D001047 ORTHO05D000768 1.8e-16 89.7 114 46.5
FAN26G1307 Fragaria x ananassa HOM05D001047 ORTHO05D000768 1.8e-16 89.7 114 46.5
FAN19G2610 Fragaria x ananassa HOM05D001047 ORTHO05D000768 2.4e-16 89.4 114 46.5
MD02G1105900 Malus domestica HOM05D001047 ORTHO05D000768 3.1e-16 89.0 116 48.3
RcHm_v2.0_Chr2g0096551 Rosa chinensis HOM05D001047 ORTHO05D000768 3.1e-16 89.0 116 47.4
Zm00001eb325530 Zea mays HOM05D001047 ORTHO05D000768 4.1e-16 88.6 94 64.9
Zm00001eb384630 Zea mays HOM05D001047 ORTHO05D000768 4.1e-16 88.6 94 64.9
Potri.018G047100 Populus trichocarpa HOM05D001047 ORTHO05D000768 5.3e-16 88.2 106 54.7
Manes.03G055200 Manihot esculenta HOM05D001047 ORTHO05D000768 1.5e-15 86.7 126 50.0
Prupe.7G189200 Prunus persica HOM05D001047 ORTHO05D000768 2.0e-15 86.3 120 48.3
BcaC04g19482 Brassica carinata HOM05D001047 ORTHO05D000768 2.6e-15 85.9 81 63.0
C09p55290 Brassica napus HOM05D001047 ORTHO05D000768 2.6e-15 85.9 81 63.0
A10p19160 Brassica napus HOM05D001047 ORTHO05D000768 4.5e-15 85.1 82 64.6
BraA10t43991Z Brassica rapa HOM05D001047 ORTHO05D000768 4.5e-15 85.1 82 64.6
FAN23G0009 Fragaria x ananassa HOM05D001047 ORTHO05D000768 4.5e-15 85.1 116 45.7
FAN23G0978 Fragaria x ananassa HOM05D001047 ORTHO05D000768 4.5e-15 85.1 116 45.7
Ciclev10009025m.g Citrus clementina HOM05D001047 ORTHO05D000768 5.9e-15 84.7 73 69.9
BolC9t58389H Brassica oleracea HOM05D001047 ORTHO05D000768 7.7e-15 84.3 96 58.3
AT5G20900 Arabidopsis thaliana HOM05D001047 ORTHO05D000768 2.2e-14 82.8 82 59.8
BcaB05g22803 Brassica carinata HOM05D001047 ORTHO05D000768 2.2e-14 82.8 103 49.5
BcaB08g37320 Brassica carinata HOM05D001047 ORTHO05D000768 3.8e-14 82.0 82 63.4
BNapus_Darmor_BZH_scaffold_38p01280 Brassica napus HOM05D001047 ORTHO05D000768 5.0e-14 81.6 82 58.5
BolC2t07081H Brassica oleracea HOM05D001047 ORTHO05D000768 5.0e-14 81.6 82 58.5
BraA02t05602Z Brassica rapa HOM05D001047 ORTHO05D000768 5.0e-14 81.6 82 58.5
Sp6g23620 Schrenkiella parvula HOM05D001047 ORTHO05D000768 5.0e-14 81.6 79 58.2
C02p10500 Brassica napus HOM05D001047 ORTHO05D000768 6.5e-14 81.3 82 58.5
CANSAT56G2853 Cannabis sativa HOM05D001047 ORTHO05D000768 6.5e-14 81.3 75 58.7
AL6G32450 Arabidopsis lyrata HOM05D001047 ORTHO05D000768 1.1e-13 80.5 78 57.7
Carub.0006s1919 Capsella rubella HOM05D001047 ORTHO05D000768 1.4e-13 80.1 82 58.5
TWI63G0579 Tripterygium wilfordii HOM05D001047 ORTHO05D000768 1.4e-13 80.1 112 48.2
ATR0006G052 Amborella trichopoda HOM05D001047 ORTHO05D000768 1.9e-13 79.7 114 45.6
Thhalv10013955m.g Eutrema salsugineum HOM05D001047 ORTHO05D000768 1.9e-13 79.7 78 56.4
Aa31LG4G13350 Aethionema arabicum HOM05D001047 ORTHO05D000768 2.5e-13 79.3 103 49.5
CANSAT56G0578 Cannabis sativa HOM05D001047 ORTHO05D000768 4.2e-13 78.6 75 57.3
CDE04G1925 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 4.2e-13 78.6 99 50.5
COL.COLO4_21176 Corchorus olitorius HOM05D001047 ORTHO05D000768 4.2e-13 78.6 95 51.6
FAN28G1146 Fragaria x ananassa HOM05D001047 ORTHO05D000768 5.5e-13 78.2 121 43.8
Os04g0653000 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 7.2e-13 77.8 95 57.9
BcaC03g13812 Brassica carinata HOM05D001047 ORTHO05D000768 9.4e-13 77.4 82 56.1
CARHR191950 Cardamine hirsuta HOM05D001047 ORTHO05D000768 1.2e-12 77.0 89 50.6
THA.LOC104799600 Tarenaya hassleriana HOM05D001047 ORTHO05D000768 1.4e-11 73.6 88 54.5
arahy.Tifrunner.gnm1.ann1.BEZ7GQ Arachis hypogaea HOM05D001047 ORTHO05D000768 3.9e-11 72.0 115 45.2
arahy.Tifrunner.gnm1.ann1.EFG4M9 Arachis hypogaea HOM05D001047 ORTHO05D000768 3.9e-11 72.0 115 45.2
THA.LOC104815065 Tarenaya hassleriana HOM05D001047 ORTHO05D000768 2.0e-10 69.7 96 51.0
Zm00001eb056840 Zea mays HOM05D001047 ORTHO05D000768 3.3e-10 68.9 70 65.7
Zm00001eb432370 Zea mays HOM05D001047 ORTHO05D000768 3.3e-10 68.9 71 64.8
Ca_02314_v3 Cicer arietinum L. HOM05D001047 ORTHO05D000768 1.3e-09 67.0 86 55.8
Zm00001eb164160 Zea mays HOM05D001047 ORTHO05D000768 1.3e-09 67.0 70 64.3
Psat1g016520 Pisum sativum HOM05D001047 ORTHO05D000768 1.7e-09 66.6 85 51.8
Lalb_Chr08g0232941 Lupinus albus HOM05D001047 ORTHO05D000768 2.8e-09 65.9 115 40.9
Zm00001eb068050 Zea mays HOM05D001047 ORTHO05D000768 3.7e-09 65.5 66 57.6
Aa31LG1G13860 Aethionema arabicum HOM05D000048 ORTHO05D000436 4.8e-09 65.1 92 45.7
Zm00001eb220310 Zea mays HOM05D001047 ORTHO05D000768 4.8e-09 65.1 71 62.0
Glyma.15G184900 Glycine max HOM05D001047 ORTHO05D000768 1.1e-08 63.9 78 51.3
Glyma.09G077500 Glycine max HOM05D001047 ORTHO05D000768 3.1e-08 62.4 114 41.2
TPR.G18015 Trifolium pratense HOM05D001047 ORTHO05D000768 3.1e-08 62.4 116 45.7
Medtr2g044910 Medicago truncatula HOM05D001047 ORTHO05D000768 5.3e-08 61.6 98 50.0
Lalb_Chr12g0200421 Lupinus albus HOM05D001047 ORTHO05D000768 2.6e-07 59.3 79 50.6
Phvul.009G221800 Phaseolus vulgaris HOM05D001047 ORTHO05D000768 4.5e-07 58.5 80 50.0
VMungo1309G1373 Vigna mungo HOM05D001047 ORTHO05D000768 5.9e-07 58.2 85 49.4
Dinv19403 Davidia involucrata HOM05D000943 ORTHO05D010024 1.3e-06 57.0 95 40.0
Lj6g0013412 Lotus japonicus HOM05D001047 ORTHO05D000768 6.5e-06 54.7 80 47.5


User provided reference genes

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