Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI13_g00698_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.7e-108 396.0 191 100.0
MBI13_g47248_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.6e-87 326.2 193 85.5
TAR624G1115 Trochodendron aralioides HOM05D006185 ORTHO05D007572 2.4e-78 295.8 190 76.8
Aqoxy7G04191 Aquilegia oxysepala HOM05D006185 ORTHO05D007572 6.4e-76 287.7 190 74.7
HPP92_004362 Vanilla planifolia HOM05D006185 ORTHO05D007572 6.4e-76 287.7 188 71.8
Nn6g35681 Nelumbo nucifera HOM05D006185 ORTHO05D007572 1.9e-75 286.2 193 71.0
Atru.chr7.1733 Acer truncatum HOM05D006185 ORTHO05D007572 1.1e-72 276.9 190 73.2
ATR0006G060 Amborella trichopoda HOM05D006185 ORTHO05D007572 1.5e-72 276.6 193 66.8
Eucgr.C03305 Eucalyptus grandis HOM05D006185 ORTHO05D007572 1.1e-70 270.4 195 68.7
Os08g0455800 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 1.4e-70 270.0 189 67.2
MBI19_g05291_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.8e-70 269.6 178 75.3
Zm00001eb040490 Zea mays HOM05D006185 ORTHO05D007572 1.8e-70 269.6 182 68.7
Ciclev10009607m.g Citrus clementina HOM05D006185 ORTHO05D007572 6.9e-70 267.7 188 69.7
Cfa002967 Carpinus fangiana HOM05D006185 ORTHO05D007572 1.2e-69 266.9 187 70.6
Manes.03G041800 Manihot esculenta HOM05D006185 ORTHO05D007572 1.5e-69 266.5 192 68.8
Nn5g27974 Nelumbo nucifera HOM05D006185 ORTHO05D007572 5.8e-69 264.6 189 66.7
Haze_26036 Corylus avellana HOM05D006185 ORTHO05D007572 2.2e-68 262.7 188 69.1
Lj7A688T82 Lonicera japonica HOM05D006185 ORTHO05D007572 4.9e-68 261.5 190 65.3
COL.COLO4_18072 Corchorus olitorius HOM05D006185 ORTHO05D007572 6.4e-68 261.2 188 69.1
Cpa.g.sc28.15 Carica papaya HOM05D006185 ORTHO05D007572 1.9e-67 259.6 189 68.8
TWI63G0883 Tripterygium wilfordii HOM05D006185 ORTHO05D007572 1.9e-67 259.6 184 69.6
Cc06_g12450 Coffea canephora HOM05D006185 ORTHO05D007572 3.2e-67 258.8 189 69.3
QL11p001224 Quercus lobata HOM05D006185 ORTHO05D007572 3.2e-67 258.8 193 67.4
Thecc.09G074200 Theobroma cacao HOM05D006185 ORTHO05D007572 3.2e-67 258.8 190 68.4
Ca_09309_v3 Cicer arietinum L. HOM05D006185 ORTHO05D007572 4.2e-67 258.5 188 67.0
Gohir.A05G034500 Gossypium hirsutum HOM05D006185 ORTHO05D007572 4.2e-67 258.5 188 69.7
Lalb_Chr07g0181271 Lupinus albus HOM05D006185 ORTHO05D007572 7.1e-67 257.7 187 67.4
CANSAT56G1413 Cannabis sativa HOM05D006185 ORTHO05D007572 9.3e-67 257.3 189 66.1
CiPaw.03G203800 Carya illinoinensis HOM05D006185 ORTHO05D007572 9.3e-67 257.3 191 65.4
EL10Ac8g19027 Beta vulgaris HOM05D006185 ORTHO05D007572 1.6e-66 256.5 188 68.1
MD02G1095400 Malus domestica HOM05D006185 ORTHO05D007572 2.1e-66 256.1 186 68.8
Phvul.003G129600 Phaseolus vulgaris HOM05D006185 ORTHO05D007572 2.7e-66 255.8 189 66.7
Gohir.D05G035900 Gossypium hirsutum HOM05D006185 ORTHO05D007572 3.5e-66 255.4 188 69.1
Gorai.009G036500 Gossypium raimondii HOM05D006185 ORTHO05D007572 3.5e-66 255.4 188 69.1
Peaxi162Scf00928g00132 Petunia axillaris HOM05D006185 ORTHO05D007572 3.5e-66 255.4 189 66.1
CANSAT56G0026 Cannabis sativa HOM05D006185 ORTHO05D007572 4.6e-66 255.0 189 66.1
Carub.0001s1876 Capsella rubella HOM05D006185 ORTHO05D007572 4.6e-66 255.0 189 67.2
CsaV3_1G041210 Cucumis sativus L. HOM05D006185 ORTHO05D007572 4.6e-66 255.0 185 67.6
Dinv25540 Davidia involucrata HOM05D006185 ORTHO05D007572 4.6e-66 255.0 192 65.1
Duzib150G0101 Durio zibethinus HOM05D006185 ORTHO05D007572 6.0e-66 254.6 191 68.1
TPR.G12562 Trifolium pratense HOM05D006185 ORTHO05D007572 7.9e-66 254.2 188 66.0
VMungo1215G2404 Vigna mungo HOM05D006185 ORTHO05D007572 7.9e-66 254.2 189 67.2
SEGI_13235 Sequoiadendron giganteum HOM05D006185 ORTHO05D007572 1.8e-65 253.1 187 67.4
Ah.09g229250 Amaranthus hybridus HOM05D006185 ORTHO05D007572 2.3e-65 252.7 188 67.0
AT1G19130 Arabidopsis thaliana HOM05D006185 ORTHO05D007572 2.3e-65 252.7 189 66.1
Potri.006G140000 Populus trichocarpa HOM05D006185 ORTHO05D007572 2.3e-65 252.7 189 67.2
CANSAT56G3530 Cannabis sativa HOM05D006185 ORTHO05D007572 3.0e-65 252.3 190 66.3
AL1G31710 Arabidopsis lyrata HOM05D006185 ORTHO05D007572 3.9e-65 251.9 189 66.1
Sopen12g004130 Solanum pennellii HOM05D006185 ORTHO05D007572 5.1e-65 251.5 188 66.0
CANSAT56G1917 Cannabis sativa HOM05D006185 ORTHO05D007572 6.7e-65 251.1 190 65.8
ClCG03G014940 Citrullus lanatus HOM05D006185 ORTHO05D007572 6.7e-65 251.1 185 67.0
HanXRQChr04g0125931 Helianthus annuus HOM05D006185 ORTHO05D007572 6.7e-65 251.1 188 66.0
PGSC0003DMG400002903 Solanum tuberosum HOM05D006185 ORTHO05D007572 6.7e-65 251.1 189 64.6
CSS0016181 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 8.7e-65 250.8 189 65.1
CSS0028340 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 8.7e-65 250.8 189 65.1
FAN26G0065 Fragaria x ananassa HOM05D006185 ORTHO05D007572 8.7e-65 250.8 185 65.9
FAN26G3397 Fragaria x ananassa HOM05D006185 ORTHO05D007572 8.7e-65 250.8 185 65.9
Solyc12g009180.2 Solanum lycopersicum HOM05D006185 ORTHO05D007572 8.7e-65 250.8 188 65.4
THA.LOC104799837 Tarenaya hassleriana HOM05D006185 ORTHO05D007572 8.7e-65 250.8 191 62.3
CAN.G1661.20 Capsicum annuum HOM05D006185 ORTHO05D007572 1.1e-64 250.4 189 64.6
Prupe.7G195700 Prunus persica HOM05D006185 ORTHO05D007572 1.5e-64 250.0 188 65.4
Gorai.010G090200 Gossypium raimondii HOM05D006185 ORTHO05D007572 1.9e-64 249.6 191 66.5
Psat7g057800 Pisum sativum HOM05D006185 ORTHO05D007572 1.9e-64 249.6 188 65.4
Nitab4.5_0000073g0300 Nicotiana tabacum HOM05D006185 ORTHO05D007572 3.3e-64 248.8 189 65.6
Medtr4g125100 Medicago truncatula HOM05D006185 ORTHO05D007572 4.3e-64 248.4 188 64.4
FvH4_1g09020 Fragaria vesca HOM05D006185 ORTHO05D007572 5.6e-64 248.1 185 65.9
FAN19G1369 Fragaria x ananassa HOM05D006185 ORTHO05D007572 5.6e-64 248.1 185 65.9
Lsat_1_v5_gn_8_85701 Lactuca sativa HOM05D006185 ORTHO05D007572 5.6e-64 248.1 188 64.4
Nitab4.5_0004234g0030 Nicotiana tabacum HOM05D006185 ORTHO05D007572 5.6e-64 248.1 189 65.6
SalBow5G0266 Salvia bowleyana HOM05D006185 ORTHO05D007572 5.6e-64 248.1 196 64.8
BcaB03g12935 Brassica carinata HOM05D006185 ORTHO05D007572 7.4e-64 247.7 189 62.4
Duzib187G0940 Durio zibethinus HOM05D006185 ORTHO05D007572 7.4e-64 247.7 191 66.0
Thhalv10008865m.g Eutrema salsugineum HOM05D006185 ORTHO05D007572 7.4e-64 247.7 189 64.6
Oeu062247.1 Olea europaea HOM05D006185 ORTHO05D007572 7.4e-64 247.7 184 65.2
Os06g0198500 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 7.4e-64 247.7 189 61.9
GSVIVG01015050001 Vitis vinifera HOM05D006185 ORTHO05D007572 7.4e-64 247.7 192 64.1
MELO3C015534.2 Cucumis melo HOM05D006185 ORTHO05D007572 9.6e-64 247.3 204 62.3
Eucgr.C00790 Eucalyptus grandis HOM05D006185 ORTHO05D007572 9.6e-64 247.3 188 67.0
Glyma.13G111600 Glycine max HOM05D006185 ORTHO05D007572 9.6e-64 247.3 194 63.9
RcHm_v2.0_Chr2g0095441 Rosa chinensis HOM05D006185 ORTHO05D007572 1.3e-63 246.9 185 64.9
Lj4g0025093 Lotus japonicus HOM05D006185 ORTHO05D007572 1.6e-63 246.5 188 63.8
SGA_v2.0_scaffold296G47554 Striga asiatica HOM05D006185 ORTHO05D007572 1.6e-63 246.5 189 64.6
PGR044G1997 Punica granatum HOM05D006185 ORTHO05D007572 4.8e-63 245.0 192 64.1
Migut.L01579 Erythranthe guttata HOM05D006185 ORTHO05D007572 6.2e-63 244.6 188 65.4
Aa31LG7G3870 Aethionema arabicum HOM05D006185 ORTHO05D007572 8.1e-63 244.2 189 63.5
Rhsim05G0005100 Rhododendron simsii HOM05D006185 ORTHO05D007572 1.1e-62 243.8 189 64.6
BcaC07g38980 Brassica carinata HOM05D006185 ORTHO05D007572 2.4e-62 242.7 189 61.4
A08p30000 Brassica napus HOM05D006185 ORTHO05D007572 2.4e-62 242.7 189 62.4
BraA08t34935Z Brassica rapa HOM05D006185 ORTHO05D007572 2.4e-62 242.7 189 62.4
ECA236G4868 Erigeron canadensis HOM05D006185 ORTHO05D007572 2.4e-62 242.7 188 63.8
FAN23G1580 Fragaria x ananassa HOM05D006185 ORTHO05D007572 2.4e-62 242.7 185 64.3
Sc06g0006920 Simmondsia chinensis HOM05D006185 ORTHO05D007572 3.1e-62 242.3 184 64.7
C08p19220 Brassica napus HOM05D006185 ORTHO05D007572 6.9e-62 241.1 189 60.8
BolC8t49541H Brassica oleracea HOM05D006185 ORTHO05D007572 6.9e-62 241.1 189 60.8
Hund26074 Selenicereus undatus HOM05D006185 ORTHO05D007572 3.4e-61 238.8 188 61.7
vmacro17122 Vaccinium macrocarpon HOM05D006185 ORTHO05D007572 9.9e-61 237.3 189 63.0
Sabra06G0109300 Salix brachista HOM05D006185 ORTHO05D007572 1.7e-60 236.5 216 58.3
Sc08g0009100 Simmondsia chinensis HOM05D006185 ORTHO05D007572 9.3e-59 230.7 187 62.6
DCAR_010492 Daucus carota HOM05D006185 ORTHO05D007572 1.2e-58 230.3 185 60.0
Actinidia30236 Actinidia chinensis HOM05D006185 ORTHO05D007572 3.5e-58 228.8 228 54.8
unitig_699.g19263 Utricularia gibba HOM05D000454 ORTHO05D007572 4.6e-58 228.4 183 61.2
Hund26091 Selenicereus undatus HOM05D006185 ORTHO05D007572 7.9e-58 227.6 189 60.8
EL10Ac8g18996 Beta vulgaris HOM05D006185 ORTHO05D007572 1.3e-55 220.3 189 60.3
arahy.Tifrunner.gnm1.ann1.Y0H2IU Arachis hypogaea HOM05D006185 ORTHO05D007572 3.7e-55 218.8 189 57.1
Pp3c9_22400 Physcomitrium patens HOM05D006185 ORTHO05D007572 4.8e-55 218.4 187 54.5
AUR62028304 Chenopodium quinoa HOM05D006185 ORTHO05D007572 6.2e-55 218.0 189 57.1
arahy.Tifrunner.gnm1.ann1.85MSRM Arachis hypogaea HOM05D006185 ORTHO05D007572 8.1e-55 217.6 192 56.8
AUR62028278 Chenopodium quinoa HOM05D006185 ORTHO05D007572 4.0e-54 215.3 188 61.7
HanXRQChr06g0168681 Helianthus annuus HOM05D006185 ORTHO05D007572 4.0e-54 215.3 188 57.4
AUR62025298 Chenopodium quinoa HOM05D006185 ORTHO05D007572 6.9e-54 214.5 189 56.6
AUR62025276 Chenopodium quinoa HOM05D006185 ORTHO05D007572 9.0e-54 214.2 150 71.3
Lsat_1_v5_gn_8_85721 Lactuca sativa HOM05D006185 ORTHO05D007572 1.2e-53 213.8 184 58.2
SMO340G0144 Selaginella moellendorffii HOM05D006185 ORTHO05D007572 1.3e-52 210.3 181 54.7
Mapoly0007s0060 Marchantia polymorpha HOM05D006185 ORTHO05D007572 2.9e-52 209.1 188 56.9
Lalb_Chr12g0200241 Lupinus albus HOM05D006185 ORTHO05D007572 6.5e-52 208.0 189 55.6
ECA236G2592 Erigeron canadensis HOM05D006185 ORTHO05D007572 2.1e-50 203.0 189 55.0
Sed0027040 Sechium edule HOM05D006185 ORTHO05D007572 2.5e-48 196.1 147 65.3
Gohir.A06G078100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 2.1e-47 193.0 191 55.0
Gohir.D06G077100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 3.3e-40 169.1 137 63.5
MBI14_g46913_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 4.5e-37 158.7 101 78.2
CARHR019730 Cardamine hirsuta HOM05D006185 ORTHO05D007572 2.6e-29 132.9 80 77.5
FAN28G1197 Fragaria x ananassa HOM05D006185 ORTHO05D007572 2.6e-29 132.9 83 71.1
Os06g0198600 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 2.5e-27 126.3 119 52.1
Ah.14g084750 Amaranthus hybridus HOM05D006185 ORTHO05D007572 7.0e-22 108.2 110 53.6
MSTRG.26479 Avicennia marina HOM05D006185 ORTHO05D007572 9.1e-22 107.8 113 53.1
Eucgr.C00789 Eucalyptus grandis HOM05D006185 ORTHO05D007572 1.6e-13 80.5 94 43.6
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 2.2e-07 60.1 75 44.0


User provided reference genes

Program Settings