Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI12_g38623_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D006298 4.5e-61 237.7 113 100.0
MBI02_g35621_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 3.6e-10 68.6 47 66.0
Actinidia07284 Actinidia chinensis HOM05D001988 ORTHO05D006298 2.6e-08 62.4 36 72.2
Actinidia24258 Actinidia chinensis HOM05D001988 ORTHO05D006298 2.6e-08 62.4 36 72.2
Hma1.2p1_0101F.1_g049570 Hydrangea macrophylla HOM05D001988 ORTHO05D006298 2.6e-08 62.4 36 75.0
vmacro03951 Vaccinium macrocarpon HOM05D001988 ORTHO05D006298 2.6e-08 62.4 36 75.0
Cc01_g07790 Coffea canephora HOM05D001988 ORTHO05D006298 3.4e-08 62.0 35 77.1
ECA238G3826 Erigeron canadensis HOM05D001988 ORTHO05D006298 3.4e-08 62.0 36 80.6
Oeu051473.1 Olea europaea HOM05D001988 ORTHO05D006298 3.4e-08 62.0 36 75.0
Dinv18851 Davidia involucrata HOM05D001988 ORTHO05D006298 4.4e-08 61.6 33 78.8
arahy.Tifrunner.gnm1.ann1.JS7C8X Arachis hypogaea HOM05D001988 ORTHO05D006298 7.5e-08 60.8 37 70.3
arahy.Tifrunner.gnm1.ann1.Q3UIYI Arachis hypogaea HOM05D001988 ORTHO05D006298 7.5e-08 60.8 37 70.3
Manes.04G062600 Manihot esculenta HOM05D001988 ORTHO05D006298 7.5e-08 60.8 36 75.0
Sc21g0006750 Simmondsia chinensis HOM05D001988 ORTHO05D006298 7.5e-08 60.8 36 72.2
Sopen11g029580 Solanum pennellii HOM05D001988 ORTHO05D006298 7.5e-08 60.8 36 72.2
TAR636G0458 Trochodendron aralioides HOM05D001988 ORTHO05D006298 7.5e-08 60.8 41 63.4
Os12g0618300 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D006298 1.3e-07 60.1 36 66.7
Peaxi162Scf00429g00122 Petunia axillaris HOM05D001988 ORTHO05D006298 1.3e-07 60.1 36 69.4
Atru.chr3.3101 Acer truncatum HOM05D001988 ORTHO05D006298 1.7e-07 59.7 36 69.4
Eucgr.J00579 Eucalyptus grandis HOM05D001988 ORTHO05D006298 1.7e-07 59.7 36 69.4
Gohir.A09G100300 Gossypium hirsutum HOM05D001988 ORTHO05D006298 1.7e-07 59.7 36 69.4
Gohir.D09G099700 Gossypium hirsutum HOM05D001988 ORTHO05D006298 1.7e-07 59.7 36 69.4
Gohir.D09G099766 Gossypium hirsutum HOM05D001988 ORTHO05D006298 1.7e-07 59.7 36 69.4
Gorai.006G116700 Gossypium raimondii HOM05D001988 ORTHO05D006298 1.7e-07 59.7 36 69.4
Lsat_1_v5_gn_2_35440 Lactuca sativa HOM05D001988 ORTHO05D006298 1.7e-07 59.7 36 77.8
Lj2A953T33 Lonicera japonica HOM05D001988 ORTHO05D006298 1.7e-07 59.7 31 77.4
MBI16_g07981_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 1.7e-07 59.7 95 34.7
Cfa010182 Carpinus fangiana HOM05D001988 ORTHO05D006298 2.2e-07 59.3 35 71.4
Dinv33543 Davidia involucrata HOM05D001988 ORTHO05D006298 2.2e-07 59.3 36 66.7
Solyc11g071910.2 Solanum lycopersicum HOM05D001988 ORTHO05D006298 2.2e-07 59.3 36 69.4
COL.COLO4_25404 Corchorus olitorius HOM05D001988 ORTHO05D006298 2.9e-07 58.9 35 71.4
MELO3C026106.2 Cucumis melo HOM05D001988 ORTHO05D006298 2.9e-07 58.9 30 83.3
CSS0034246 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D006298 3.7e-07 58.5 29 82.8
CiPaw.13G129100 Carya illinoinensis HOM05D001988 ORTHO05D006298 3.7e-07 58.5 41 61.0
FvH4_3g26290 Fragaria vesca HOM05D001988 ORTHO05D006298 3.7e-07 58.5 41 61.0
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 3.7e-07 58.5 41 61.0
RcHm_v2.0_Chr5g0048681 Rosa chinensis HOM05D001988 ORTHO05D006298 3.7e-07 58.5 41 61.0
Thecc.09G271000 Theobroma cacao HOM05D001988 ORTHO05D006298 3.7e-07 58.5 36 69.4
ClCG01G010890 Citrullus lanatus HOM05D001988 ORTHO05D006298 4.9e-07 58.2 34 70.6
MELO3C008925.2 Cucumis melo HOM05D001988 ORTHO05D006298 4.9e-07 58.2 34 70.6
CsaV3_4G030600 Cucumis sativus L. HOM05D001988 ORTHO05D006298 4.9e-07 58.2 34 70.6
HanXRQChr14g0431711 Helianthus annuus HOM05D001988 ORTHO05D006298 4.9e-07 58.2 36 75.0
Nitab4.5_0002792g0050 Nicotiana tabacum HOM05D001988 ORTHO05D006298 4.9e-07 58.2 36 66.7
PGSC0003DMG400003001 Solanum tuberosum HOM05D001988 ORTHO05D006298 4.9e-07 58.2 36 66.7
SGA_v2.0_scaffold268G46203 Striga asiatica HOM05D001988 ORTHO05D006298 4.9e-07 58.2 36 69.4
Zm00001eb031980 Zea mays HOM05D001988 ORTHO05D006298 4.9e-07 58.2 36 63.9
Ciclev10028074m.g Citrus clementina HOM05D001988 ORTHO05D006298 6.4e-07 57.8 36 69.4
Atru.chr3.3098 Acer truncatum HOM05D001988 ORTHO05D006298 8.3e-07 57.4 36 63.9
Haze_23572 Corylus avellana HOM05D001988 ORTHO05D006298 8.3e-07 57.4 29 82.8
CsaV3_1G015690 Cucumis sativus L. HOM05D001988 ORTHO05D006298 8.3e-07 57.4 30 80.0
GSVIVG01037592001 Vitis vinifera HOM05D001988 ORTHO05D006298 1.1e-06 57.0 30 83.3
ATR0006G002 Amborella trichopoda HOM05D001988 ORTHO05D006298 1.4e-06 56.6 36 63.9
CDE06G0259 Ceratophyllum demersum HOM05D001988 ORTHO05D006298 1.4e-06 56.6 36 69.4
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.4e-06 56.6 41 58.5
Cpa.g.sc103.19 Carica papaya HOM05D001988 ORTHO05D006298 1.9e-06 56.2 36 69.4
FAN21G2899 Fragaria x ananassa HOM05D001988 ORTHO05D006298 1.9e-06 56.2 41 56.1
Nn6g34638 Nelumbo nucifera HOM05D001988 ORTHO05D006298 1.9e-06 56.2 34 73.5
Nitab4.5_0007630g0020 Nicotiana tabacum HOM05D001988 ORTHO05D006298 1.9e-06 56.2 52 51.9
Potri.009G017000 Populus trichocarpa HOM05D001988 ORTHO05D006298 1.9e-06 56.2 34 70.6
MD05G1034700 Malus domestica HOM05D001988 ORTHO05D006298 2.4e-06 55.8 36 66.7
THA.LOC104826449 Tarenaya hassleriana HOM05D001988 ORTHO05D006298 2.4e-06 55.8 41 58.5
Ah.15g092110 Amaranthus hybridus HOM05D001988 ORTHO05D006298 3.2e-06 55.5 36 63.9
Duzib168G1815 Durio zibethinus HOM05D001988 ORTHO05D006298 3.2e-06 55.5 36 61.1
Lalb_Chr03g0028461 Lupinus albus HOM05D001988 ORTHO05D006298 3.2e-06 55.5 34 67.6
MBI08_g01804_MAGBIO Magnolia biondii HOM05D000003 ORTHO05D000004 3.2e-06 55.5 43 53.5
Sabra09G0009700 Salix brachista HOM05D001988 ORTHO05D006298 3.2e-06 55.5 33 72.7
ClCG04G002140 Citrullus lanatus HOM05D001988 ORTHO05D006298 4.1e-06 55.1 34 64.7
Glyma.12G189600 Glycine max HOM05D001988 ORTHO05D006298 4.1e-06 55.1 34 70.6
Os03g0647500 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D019859 4.1e-06 55.1 36 63.9
PGR119G1622 Punica granatum HOM05D001988 ORTHO05D006298 4.1e-06 55.1 39 56.4
QL01p019440 Quercus lobata HOM05D001988 ORTHO05D006298 4.1e-06 55.1 35 65.7
Glyma.13G312200 Glycine max HOM05D001988 ORTHO05D006298 5.4e-06 54.7 34 70.6
Thhalv10007194m.g Eutrema salsugineum HOM05D001988 ORTHO05D006298 7.1e-06 54.3 41 56.1
Hund18799 Selenicereus undatus HOM05D001988 ORTHO05D006298 7.1e-06 54.3 36 61.1
BcaB03g13337 Brassica carinata HOM05D001988 ORTHO05D006298 9.2e-06 53.9 41 56.1
BcaC07g38386 Brassica carinata HOM05D001988 ORTHO05D006298 9.2e-06 53.9 41 56.1
BcaC07g42533 Brassica carinata HOM05D001988 ORTHO05D006298 9.2e-06 53.9 41 56.1
A08p35180 Brassica napus HOM05D001988 ORTHO05D006298 9.2e-06 53.9 41 56.1
BraA08t35427Z Brassica rapa HOM05D001988 ORTHO05D006298 9.2e-06 53.9 41 56.1
CARHR008290 Cardamine hirsuta HOM05D001988 ORTHO05D006298 9.2e-06 53.9 41 56.1
AUR62001563 Chenopodium quinoa HOM05D001988 ORTHO05D006298 9.2e-06 53.9 35 62.9
AUR62020220 Chenopodium quinoa HOM05D001988 ORTHO05D006298 9.2e-06 53.9 33 63.6
Migut.N02439 Erythranthe guttata HOM05D001988 ORTHO05D006298 9.2e-06 53.9 34 67.6


User provided reference genes

Program Settings