Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI12_g26993_MAGBIO Magnolia biondii HOM05D000595 ORTHO05D020850 2.1e-64 248.8 124 100.0
MBI14_g32920_MAGBIO Magnolia biondii HOM05D000595 ORTHO05D020850 1.0e-26 123.6 69 85.5
MBI11_g08228_MAGBIO Magnolia biondii HOM05D000092 ORTHO05D000089 3.0e-26 122.1 64 90.6
MBI10_g16028_MAGBIO Magnolia biondii HOM05D000595 ORTHO05D001274 2.4e-15 85.9 193 34.7
Hma1.2p1_0061F.1_g034030 Hydrangea macrophylla HOM05D000595 ORTHO05D001274 1.7e-13 79.7 48 75.0
Nn4g23818 Nelumbo nucifera HOM05D000595 ORTHO05D001274 1.7e-13 79.7 48 72.9
Nn3g17822 Nelumbo nucifera HOM05D000595 ORTHO05D001274 3.8e-13 78.6 48 72.9
QL04p034036 Quercus lobata HOM05D000595 ORTHO05D001274 5.0e-13 78.2 48 72.9
CSS0038244 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D001274 1.5e-12 76.6 51 68.6
CiPaw.15G084100 Carya illinoinensis HOM05D000595 ORTHO05D001274 1.9e-12 76.3 50 70.0
Manes.06G069100 Manihot esculenta HOM05D000595 ORTHO05D001274 1.9e-12 76.3 48 70.8
Manes.06G069200 Manihot esculenta HOM05D000595 ORTHO05D001274 1.9e-12 76.3 48 70.8
QL04p034054 Quercus lobata HOM05D000595 ORTHO05D001274 1.9e-12 76.3 48 70.8
TAR629G2146 Trochodendron aralioides HOM05D000595 ORTHO05D001274 1.9e-12 76.3 48 70.8
CAN.G656.15 Capsicum annuum HOM05D000595 ORTHO05D001274 2.5e-12 75.9 48 70.8
Dinv21095 Davidia involucrata HOM05D000595 ORTHO05D001274 2.5e-12 75.9 48 68.8
Nitab4.5_0003330g0050 Nicotiana tabacum HOM05D000595 ORTHO05D001274 2.5e-12 75.9 48 70.8
Nitab4.5_0006400g0010 Nicotiana tabacum HOM05D000595 ORTHO05D001274 2.5e-12 75.9 76 53.9
Oeu035418.1 Olea europaea HOM05D000595 ORTHO05D001274 3.2e-12 75.5 48 70.8
CAN.G439.41 Capsicum annuum HOM05D000595 ORTHO05D001274 5.5e-12 74.7 48 68.8
MELO3C011570.2 Cucumis melo HOM05D000595 ORTHO05D001274 5.5e-12 74.7 77 54.5
CsaV3_6G003480 Cucumis sativus L. HOM05D000595 ORTHO05D001274 5.5e-12 74.7 77 54.5
Hma1.2p1_0189F.1_g082510 Hydrangea macrophylla HOM05D000595 ORTHO05D001274 5.5e-12 74.7 48 66.7
Hma1.2p1_2707F.1_g327190 Hydrangea macrophylla HOM05D000595 ORTHO05D001274 5.5e-12 74.7 48 66.7
Manes.14G101700 Manihot esculenta HOM05D000595 ORTHO05D001274 5.5e-12 74.7 48 68.8
Nitab4.5_0000057g0290 Nicotiana tabacum HOM05D000595 ORTHO05D001274 5.5e-12 74.7 48 66.7
Nitab4.5_0000874g0110 Nicotiana tabacum HOM05D000595 ORTHO05D001274 5.5e-12 74.7 48 68.8
arahy.Tifrunner.gnm1.ann1.NFLY9K Arachis hypogaea HOM05D000595 ORTHO05D001274 7.2e-12 74.3 76 52.6
Ciclev10033422m.g Citrus clementina HOM05D000595 ORTHO05D001274 7.2e-12 74.3 48 68.8
Migut.E00333 Erythranthe guttata HOM05D000595 ORTHO05D001274 7.2e-12 74.3 76 52.6
Solyc05g009470.4 Solanum lycopersicum HOM05D000595 ORTHO05D001274 7.2e-12 74.3 48 68.8
Sopen05g005270 Solanum pennellii HOM05D000595 ORTHO05D001274 7.2e-12 74.3 48 68.8
PGSC0003DMG400014540 Solanum tuberosum HOM05D000595 ORTHO05D001274 7.2e-12 74.3 48 68.8
Actinidia38371 Actinidia chinensis HOM05D000595 ORTHO05D001274 1.2e-11 73.6 48 66.7
BraA07t30823Z Brassica rapa HOM05D000595 ORTHO05D001274 1.2e-11 73.6 76 51.3
Peaxi162Scf00382g00313 Petunia axillaris HOM05D000595 ORTHO05D001274 1.2e-11 73.6 48 66.7
CSS0010238 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D001274 1.6e-11 73.2 49 65.3
Cfa018602 Carpinus fangiana HOM05D000595 ORTHO05D001274 1.6e-11 73.2 48 68.8
CiPaw.16G064500 Carya illinoinensis HOM05D000595 ORTHO05D001274 1.6e-11 73.2 48 68.8
DCAR_007240 Daucus carota HOM05D000595 ORTHO05D001274 1.6e-11 73.2 48 66.7
RcHm_v2.0_Chr4g0435281 Rosa chinensis HOM05D000595 ORTHO05D001274 1.6e-11 73.2 50 66.0
CANSAT01G0742 Cannabis sativa HOM05D000595 ORTHO05D001274 2.1e-11 72.8 48 64.6
CDE10G0024 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 2.1e-11 72.8 48 66.7
Lj5g0022276 Lotus japonicus HOM05D000595 ORTHO05D001274 2.1e-11 72.8 48 68.8
Aqoxy3G03952 Aquilegia oxysepala HOM05D000595 ORTHO05D001274 2.7e-11 72.4 48 66.7
arahy.Tifrunner.gnm1.ann1.4542IJ Arachis hypogaea HOM05D000595 ORTHO05D001274 2.7e-11 72.4 50 66.0
A07p31950 Brassica napus HOM05D000595 ORTHO05D001274 2.7e-11 72.4 76 50.0
C06p37540 Brassica napus HOM05D000595 ORTHO05D001274 2.7e-11 72.4 76 50.0
BolC6t38856H Brassica oleracea HOM05D000595 ORTHO05D001274 2.7e-11 72.4 76 50.0
CDE10G0670 Ceratophyllum demersum HOM05D000595 ORTHO05D001274 2.7e-11 72.4 76 51.3
ClCG08G005300 Citrullus lanatus HOM05D000595 ORTHO05D001274 2.7e-11 72.4 77 51.9
Actinidia13663 Actinidia chinensis HOM05D000595 ORTHO05D001274 3.6e-11 72.0 48 64.6
Cc11_g10230 Coffea canephora HOM05D000595 ORTHO05D001274 3.6e-11 72.0 48 68.8
Cc11_g10240 Coffea canephora HOM05D000595 ORTHO05D001274 3.6e-11 72.0 48 68.8
MELO3C012241.2 Cucumis melo HOM05D000595 ORTHO05D001274 3.6e-11 72.0 48 66.7
GSVIVG01011904001 Vitis vinifera HOM05D000595 ORTHO05D001274 3.6e-11 72.0 48 66.7
CSS0016368 Camellia sinensis var. sinensis HOM05D000595 ORTHO05D001274 4.7e-11 71.6 48 64.6
Cpa.g.sc1.180 Carica papaya HOM05D000595 ORTHO05D001274 4.7e-11 71.6 48 66.7
Haze_17474 Corylus avellana HOM05D000595 ORTHO05D001274 4.7e-11 71.6 48 66.7
Prupe.1G309900 Prunus persica HOM05D000595 ORTHO05D001274 4.7e-11 71.6 50 64.0
Hund05753 Selenicereus undatus HOM05D000595 ORTHO05D001274 4.7e-11 71.6 48 66.7
BcaC08g45964 Brassica carinata HOM05D000595 ORTHO05D001274 6.1e-11 71.2 76 48.7
MD13G1042700 Malus domestica HOM05D000595 ORTHO05D001274 6.1e-11 71.2 50 62.0
MD16G1043700 Malus domestica HOM05D000595 ORTHO05D001274 6.1e-11 71.2 50 62.0
AUR62002880 Chenopodium quinoa HOM05D000595 ORTHO05D001274 1.0e-10 70.5 48 64.6
CsaV3_5G034260 Cucumis sativus L. HOM05D000595 ORTHO05D001274 1.0e-10 70.5 48 64.6
Lalb_Chr10g0099981 Lupinus albus HOM05D000595 ORTHO05D001274 1.0e-10 70.5 50 64.0
Phvul.003G035400 Phaseolus vulgaris HOM05D000595 ORTHO05D001274 1.0e-10 70.5 49 63.3
Sc04g0006470 Simmondsia chinensis HOM05D000595 ORTHO05D001274 1.0e-10 70.5 48 68.8
arahy.Tifrunner.gnm1.ann1.E2GMYT Arachis hypogaea HOM05D000595 ORTHO05D001274 1.8e-10 69.7 50 62.0
arahy.Tifrunner.gnm1.ann1.NG0Q3I Arachis hypogaea HOM05D000595 ORTHO05D001274 1.8e-10 69.7 50 62.0
Oeu043865.1 Olea europaea HOM05D000595 ORTHO05D001274 1.8e-10 69.7 48 64.6
Psat0s3342g0160 Pisum sativum HOM05D000595 ORTHO05D001274 1.8e-10 69.7 76 50.0
Rhsim12G0083200 Rhododendron simsii HOM05D000595 ORTHO05D001274 1.8e-10 69.7 48 64.6
Solyc04g007150.3 Solanum lycopersicum HOM05D000595 ORTHO05D001274 1.8e-10 69.7 48 64.6
Lj6A759T77 Lonicera japonica HOM05D000595 ORTHO05D001274 2.3e-10 69.3 193 28.5
PGR119G2037 Punica granatum HOM05D000595 ORTHO05D001274 2.3e-10 69.3 48 66.7
SGA_v2.0_scaffold14G06856 Striga asiatica HOM05D000595 ORTHO05D001274 2.3e-10 69.3 50 62.0
vmacro01377 Vaccinium macrocarpon HOM05D000595 ORTHO05D001274 2.3e-10 69.3 48 64.6
FAN07G0189 Fragaria x ananassa HOM05D000595 ORTHO05D001274 3.0e-10 68.9 51 60.8
FAN07G0687 Fragaria x ananassa HOM05D000595 ORTHO05D001274 3.0e-10 68.9 51 60.8
FAN22G0384 Fragaria x ananassa HOM05D000595 ORTHO05D001274 3.0e-10 68.9 51 60.8
Lalb_Chr04g0254751 Lupinus albus HOM05D000595 ORTHO05D001274 3.0e-10 68.9 48 64.6
SHI16012 Sapria himalayana HOM05D000595 ORTHO05D001274 3.0e-10 68.9 48 62.5
Sed0008868 Sechium edule HOM05D000595 ORTHO05D001274 3.0e-10 68.9 48 62.5
Hund25069 Selenicereus undatus HOM05D000595 ORTHO05D001274 3.0e-10 68.9 48 62.5
TPR.G26317 Trifolium pratense HOM05D000595 ORTHO05D001274 3.0e-10 68.9 48 62.5
BcaB03g15841 Brassica carinata HOM05D000595 ORTHO05D001274 4.0e-10 68.6 76 50.0
ECA234G4000 Erigeron canadensis HOM05D000595 ORTHO05D001274 4.0e-10 68.6 153 30.1
FAN12G2275 Fragaria x ananassa HOM05D000595 ORTHO05D001274 4.0e-10 68.6 51 60.8
FAN12G3023 Fragaria x ananassa HOM05D000595 ORTHO05D001274 4.0e-10 68.6 51 60.8
Lsat_1_v5_gn_8_39840 Lactuca sativa HOM05D000595 ORTHO05D001274 4.0e-10 68.6 48 62.5
Medtr1g110980 Medicago truncatula HOM05D000595 ORTHO05D001274 4.0e-10 68.6 50 62.0
PGSC0003DMG400015881 Solanum tuberosum HOM05D000595 ORTHO05D001274 4.0e-10 68.6 50 62.0
TWI79G1486 Tripterygium wilfordii HOM05D000595 ORTHO05D001274 4.0e-10 68.6 48 62.5
VMungo0251G1866 Vigna mungo HOM05D000595 ORTHO05D001274 4.0e-10 68.6 49 61.2
ClCG05G022770 Citrullus lanatus HOM05D000595 ORTHO05D001274 5.2e-10 68.2 48 62.5
PSO384G1387 Papaver somniferum HOM05D000595 ORTHO05D001274 5.2e-10 68.2 48 60.4
Peaxi162Scf01346g00216 Petunia axillaris HOM05D000595 ORTHO05D001274 5.2e-10 68.2 48 62.5
Sed0011005 Sechium edule HOM05D000595 ORTHO05D001274 6.8e-10 67.8 195 28.7
Sopen04g002240 Solanum pennellii HOM05D000595 ORTHO05D001274 6.8e-10 67.8 48 62.5
SalBow8G5264 Salvia bowleyana HOM05D000595 ORTHO05D001274 8.8e-10 67.4 48 60.4
MSTRG.2239 Avicennia marina HOM05D000595 ORTHO05D001274 1.2e-09 67.0 48 60.4
AUR62035240 Chenopodium quinoa HOM05D000595 ORTHO05D001274 1.2e-09 67.0 48 62.5
Ca_05208_v3 Cicer arietinum L. HOM05D000595 ORTHO05D001274 1.2e-09 67.0 48 60.4
Glyma.08G262800 Glycine max HOM05D000595 ORTHO05D001274 1.2e-09 67.0 48 60.4
PSO339G2215 Papaver somniferum HOM05D000595 ORTHO05D001274 1.2e-09 67.0 48 58.3
TPR.G27807 Trifolium pratense HOM05D000595 ORTHO05D001274 1.2e-09 67.0 48 58.3
EL10Ac6g14425 Beta vulgaris HOM05D000595 ORTHO05D001274 1.5e-09 66.6 48 62.5
FvH4_4g27500 Fragaria vesca HOM05D000595 ORTHO05D001274 1.5e-09 66.6 51 58.8
Glyma.01G081300 Glycine max HOM05D000595 ORTHO05D001274 1.5e-09 66.6 48 60.4
Lj2g0001426 Lotus japonicus HOM05D000595 ORTHO05D001274 1.5e-09 66.6 48 60.4
Lj2g0014303 Lotus japonicus HOM05D000595 ORTHO05D001274 1.5e-09 66.6 48 60.4
Medtr5g057990 Medicago truncatula HOM05D000595 ORTHO05D001274 1.5e-09 66.6 48 60.4
Sabra10G0095600 Salix brachista HOM05D000595 ORTHO05D001274 1.5e-09 66.6 48 62.5
BcaC03g14968 Brassica carinata HOM05D000595 ORTHO05D001274 2.0e-09 66.2 76 47.4
C02p24920 Brassica napus HOM05D000595 ORTHO05D001274 2.0e-09 66.2 76 47.4
BolC2t08583H Brassica oleracea HOM05D000595 ORTHO05D001274 2.0e-09 66.2 76 47.4
THA.LOC104821941 Tarenaya hassleriana HOM05D000595 ORTHO05D001274 2.0e-09 66.2 76 48.7
A02p15170 Brassica napus HOM05D000595 ORTHO05D001274 2.6e-09 65.9 76 47.4
BraA02t06582Z Brassica rapa HOM05D000595 ORTHO05D001274 2.6e-09 65.9 76 47.4
Lj3g0011539 Lotus japonicus HOM05D000595 ORTHO05D001274 2.6e-09 65.9 49 61.2
Sabra08G0091000 Salix brachista HOM05D000595 ORTHO05D001274 2.6e-09 65.9 48 60.4
Gohir.D11G339200 Gossypium hirsutum HOM05D000595 ORTHO05D001274 3.4e-09 65.5 76 47.4
Psat2g106040 Pisum sativum HOM05D000595 ORTHO05D001274 3.4e-09 65.5 48 60.4
SalBow8G0212 Salvia bowleyana HOM05D000595 ORTHO05D001274 3.4e-09 65.5 48 58.3
SalBow8G2263 Salvia bowleyana HOM05D000595 ORTHO05D001274 3.4e-09 65.5 48 58.3
Duzib251G0431 Durio zibethinus HOM05D000595 ORTHO05D001274 5.7e-09 64.7 48 60.4
Duzib268G0359 Durio zibethinus HOM05D000595 ORTHO05D001274 5.7e-09 64.7 48 60.4
Thhalv10018090m.g Eutrema salsugineum HOM05D000595 ORTHO05D001274 5.7e-09 64.7 78 48.7
Gohir.A11G320100 Gossypium hirsutum HOM05D000595 ORTHO05D001274 5.7e-09 64.7 48 60.4
Gohir.D12G170900 Gossypium hirsutum HOM05D000595 ORTHO05D001274 5.7e-09 64.7 48 60.4
Gorai.007G368700 Gossypium raimondii HOM05D000595 ORTHO05D001274 5.7e-09 64.7 48 60.4
Gorai.008G183500 Gossypium raimondii HOM05D000595 ORTHO05D001274 5.7e-09 64.7 48 60.4
Potri.008G120000 Populus trichocarpa HOM05D000595 ORTHO05D001274 5.7e-09 64.7 48 60.4
A07p34950 Brassica napus HOM05D000595 ORTHO05D001274 7.5e-09 64.3 76 50.0
Potri.010G125800 Populus trichocarpa HOM05D000595 ORTHO05D001274 7.5e-09 64.3 48 60.4
RcHm_v2.0_Chr4g0435321 Rosa chinensis HOM05D000595 ORTHO05D001274 7.5e-09 64.3 48 56.2
BcaB03g15426 Brassica carinata HOM05D000595 ORTHO05D001274 9.8e-09 63.9 76 48.7
BcaB05g24397 Brassica carinata HOM05D000595 ORTHO05D001274 1.3e-08 63.5 76 48.7
Lsat_1_v5_gn_4_17961 Lactuca sativa HOM05D000595 ORTHO05D001274 1.3e-08 63.5 48 56.2
TPR.G26300 Trifolium pratense HOM05D000595 ORTHO05D001274 1.3e-08 63.5 48 58.3
BcaC08g46296 Brassica carinata HOM05D000595 ORTHO05D001274 1.7e-08 63.2 76 48.7
C06p41360 Brassica napus HOM05D000595 ORTHO05D001274 1.7e-08 63.2 76 48.7
BolC6t39288H Brassica oleracea HOM05D000595 ORTHO05D001274 1.7e-08 63.2 76 48.7
arahy.Tifrunner.gnm1.ann1.W977IP Arachis hypogaea HOM05D000595 ORTHO05D001274 2.8e-08 62.4 50 56.0
Thecc.02G356000 Theobroma cacao HOM05D000595 ORTHO05D001274 2.8e-08 62.4 48 60.4
COL.COLO4_07916 Corchorus olitorius HOM05D000595 ORTHO05D001274 4.9e-08 61.6 48 58.3
Sp5g23650 Schrenkiella parvula HOM05D000595 ORTHO05D001274 4.9e-08 61.6 77 46.8
SEGI_10960 Sequoiadendron giganteum HOM05D000595 ORTHO05D001274 4.9e-08 61.6 51 54.9
Aa31LG5G9570 Aethionema arabicum HOM05D000595 ORTHO05D001274 6.3e-08 61.2 79 46.8
AT3G45940 Arabidopsis thaliana HOM05D000595 ORTHO05D001274 6.3e-08 61.2 76 46.1
arahy.Tifrunner.gnm1.ann1.Z1NGKZ Arachis hypogaea HOM05D000595 ORTHO05D001274 6.3e-08 61.2 51 58.8
Gohir.D13G067000 Gossypium hirsutum HOM05D000595 ORTHO05D001274 8.3e-08 60.8 48 56.2
Gorai.013G076300 Gossypium raimondii HOM05D000595 ORTHO05D001274 8.3e-08 60.8 48 56.2
Psat0s3342g0120 Pisum sativum HOM05D000595 ORTHO05D001274 1.1e-07 60.5 48 54.2
HanXRQChr16g0529301 Helianthus annuus HOM05D000595 ORTHO05D001274 1.8e-07 59.7 48 54.2
CARHR061350 Cardamine hirsuta HOM05D000595 ORTHO05D001274 2.4e-07 59.3 76 48.7
HanXRQChr08g0213821 Helianthus annuus HOM05D000595 ORTHO05D001274 3.1e-07 58.9 50 60.0
Prupe.2G076500 Prunus persica HOM05D000595 ORTHO05D020850 3.1e-07 58.9 45 64.4
CARHR154320 Cardamine hirsuta HOM05D000595 ORTHO05D001274 4.1e-07 58.5 50 54.0
SEGI_01782 Sequoiadendron giganteum HOM05D000595 ORTHO05D001274 4.1e-07 58.5 51 51.0
SEGI_39838 Sequoiadendron giganteum HOM05D000595 ORTHO05D001274 7.0e-07 57.8 51 52.9
Medtr1g111000 Medicago truncatula HOM05D000595 ORTHO05D001274 9.2e-07 57.4 49 57.1
SEGI_03678 Sequoiadendron giganteum HOM05D000595 ORTHO05D001274 9.2e-07 57.4 48 56.2
SEGI_28691 Sequoiadendron giganteum HOM05D000595 ORTHO05D001274 9.2e-07 57.4 48 56.2
MBI08_g12708_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D000022 1.2e-06 57.0 84 48.8
MBI12_g17812_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D011600 2.0e-06 56.2 31 93.5
MBI13_g39738_MAGBIO Magnolia biondii HOM05D002410 ORTHO05D011600 4.5e-06 55.1 43 76.7
Pp3c26_9330 Physcomitrium patens HOM05D000595 ORTHO05D001274 4.5e-06 55.1 50 48.0
SEGI_26818 Sequoiadendron giganteum HOM05D000595 ORTHO05D001274 4.5e-06 55.1 51 49.0
Ciclev10004183m.g Citrus clementina HOM05D002696 ORTHO05D003940 5.9e-06 54.7 40 80.0
Glyma.10G274700 Glycine max HOM05D000595 ORTHO05D001274 5.9e-06 54.7 48 54.2
Sabra01G0096100 Salix brachista HOM05D002696 ORTHO05D003940 5.9e-06 54.7 40 80.0
SEGI_05111 Sequoiadendron giganteum HOM05D000595 ORTHO05D001274 5.9e-06 54.7 48 54.2
SEGI_11873 Sequoiadendron giganteum HOM05D000595 ORTHO05D001274 5.9e-06 54.7 48 54.2
Cfa008155 Carpinus fangiana HOM05D002696 ORTHO05D003940 7.7e-06 54.3 39 82.1
CiPaw.04G059400 Carya illinoinensis HOM05D002696 ORTHO05D003940 7.7e-06 54.3 39 82.1
Haze_13890 Corylus avellana HOM05D002696 ORTHO05D003940 7.7e-06 54.3 39 82.1
SEGI_13283 Sequoiadendron giganteum HOM05D000595 ORTHO05D001274 7.7e-06 54.3 76 42.1
SEGI_34637 Sequoiadendron giganteum HOM05D000595 ORTHO05D001274 7.7e-06 54.3 76 42.1


User provided reference genes

Program Settings