Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI12_g20129_MAGBIO Magnolia biondii HOM05D000331 ORTHO05D013259 5.5e-40 167.2 83 100.0
MBI05_g31453_MAGBIO Magnolia biondii HOM05D000331 ORTHO05D003399 2.2e-25 118.6 93 66.7
TAR381G0865 Trochodendron aralioides HOM05D000331 ORTHO05D003399 2.2e-17 92.0 101 49.5
TAR376G0360 Trochodendron aralioides HOM05D000331 ORTHO05D003399 3.8e-17 91.3 101 47.5
TAR628G0110 Trochodendron aralioides HOM05D000331 ORTHO05D003399 3.8e-17 91.3 101 50.5
GSVIVG01037193001 Vitis vinifera HOM05D000331 ORTHO05D003399 8.5e-17 90.1 84 54.8
CDE04G3072 Ceratophyllum demersum HOM05D000331 ORTHO05D013259 2.5e-16 88.6 100 48.0
Potri.019G068700 Populus trichocarpa HOM05D000331 ORTHO05D003399 5.5e-16 87.4 86 52.3
CiPaw.03G013200 Carya illinoinensis HOM05D000331 ORTHO05D003399 7.2e-16 87.0 84 53.6
CANSAT21G1643 Cannabis sativa HOM05D000331 ORTHO05D003399 9.4e-16 86.7 98 46.9
ClCG11G008360 Citrullus lanatus HOM05D000331 ORTHO05D003399 1.2e-15 86.3 97 48.5
Actinidia01628 Actinidia chinensis HOM05D000331 ORTHO05D003399 1.6e-15 85.9 96 46.9
Dinv22132 Davidia involucrata HOM05D000331 ORTHO05D003399 1.6e-15 85.9 84 52.4
Potri.013G096701 Populus trichocarpa HOM05D000331 ORTHO05D013259 2.7e-15 85.1 86 54.7
ClCG08G001510 Citrullus lanatus HOM05D000331 ORTHO05D003399 3.6e-15 84.7 85 54.1
Eucgr.I02791 Eucalyptus grandis HOM05D000331 ORTHO05D003399 3.6e-15 84.7 96 47.9
MELO3C022135.2 Cucumis melo HOM05D000331 ORTHO05D003399 4.7e-15 84.3 85 54.1
Actinidia00153 Actinidia chinensis HOM05D000331 ORTHO05D003399 1.4e-14 82.8 99 47.5
Sc07g0004530 Simmondsia chinensis HOM05D000331 ORTHO05D003399 1.4e-14 82.8 96 49.0
CsaV3_5G039590 Cucumis sativus L. HOM05D000331 ORTHO05D003399 1.8e-14 82.4 85 52.9
Sed0002348 Sechium edule HOM05D000331 ORTHO05D003399 1.8e-14 82.4 97 46.4
CiPaw.04G009000 Carya illinoinensis HOM05D000331 ORTHO05D003399 3.0e-14 81.6 94 46.8
Lj9A281G42 Lonicera japonica HOM05D000331 ORTHO05D003399 5.2e-14 80.9 84 52.4
CsaV3_2G033270 Cucumis sativus L. HOM05D000331 ORTHO05D003399 6.8e-14 80.5 97 44.3
Dinv29672 Davidia involucrata HOM05D000331 ORTHO05D003399 6.8e-14 80.5 98 48.0
Hma1.2p1_0052F.1_g029935 Hydrangea macrophylla HOM05D000331 ORTHO05D003399 8.8e-14 80.1 97 50.5
Sabra19G0082200 Salix brachista HOM05D000331 ORTHO05D003399 8.8e-14 80.1 88 47.7
arahy.Tifrunner.gnm1.ann1.07YC75 Arachis hypogaea HOM05D000331 ORTHO05D003399 1.2e-13 79.7 98 50.0
arahy.Tifrunner.gnm1.ann1.KKPS0T Arachis hypogaea HOM05D006686 ORTHO05D003399 1.2e-13 79.7 98 50.0
Ciclev10018754m.g Citrus clementina HOM05D000331 ORTHO05D003399 1.2e-13 79.7 79 54.4
MELO3C008098.2 Cucumis melo HOM05D000331 ORTHO05D003399 2.6e-13 78.6 97 44.3
Manes.18G111800 Manihot esculenta HOM05D000331 ORTHO05D003399 2.6e-13 78.6 78 57.7
TWI75G0938 Tripterygium wilfordii HOM05D000331 ORTHO05D003399 3.4e-13 78.2 95 47.4
CDE07G0866 Ceratophyllum demersum HOM05D000331 ORTHO05D003399 4.4e-13 77.8 100 44.0
SalBow6G4472 Salvia bowleyana HOM05D000331 ORTHO05D003399 4.4e-13 77.8 99 46.5
SalBow6G4750 Salvia bowleyana HOM05D000331 ORTHO05D003399 4.4e-13 77.8 99 46.5
Thecc.08G180800 Theobroma cacao HOM05D000331 ORTHO05D003399 5.7e-13 77.4 82 52.4
ATR1159G078 Amborella trichopoda HOM05D000331 ORTHO05D003399 7.5e-13 77.0 100 45.0
vmacro01684 Vaccinium macrocarpon HOM05D000331 ORTHO05D003399 9.8e-13 76.6 98 46.9
Ca_02689_v3 Cicer arietinum L. HOM05D000331 ORTHO05D013259 1.3e-12 76.3 78 51.3
PGR142G0664 Punica granatum HOM05D000331 ORTHO05D003399 1.3e-12 76.3 96 43.8
QL09p001435 Quercus lobata HOM05D000331 ORTHO05D003399 1.3e-12 76.3 98 46.9
Haze_13975 Corylus avellana HOM05D000331 ORTHO05D003399 2.2e-12 75.5 99 44.4
RcHm_v2.0_Chr6g0250411 Rosa chinensis HOM05D000331 ORTHO05D003399 2.2e-12 75.5 99 45.5
Sed0017899 Sechium edule HOM05D000331 ORTHO05D003399 2.2e-12 75.5 85 49.4
MSTRG.25491 Avicennia marina HOM05D000331 ORTHO05D003399 2.8e-12 75.1 98 44.9
Lj4g0009625 Lotus japonicus HOM05D000331 ORTHO05D003399 2.8e-12 75.1 97 47.4
Manes.02G204900 Manihot esculenta HOM05D000331 ORTHO05D003399 2.8e-12 75.1 99 46.5
Thecc.06G000800 Theobroma cacao HOM05D000331 ORTHO05D003399 2.8e-12 75.1 98 44.9
TWI12G0042 Tripterygium wilfordii HOM05D000331 ORTHO05D003399 2.8e-12 75.1 95 46.3
Duzib235G1370 Durio zibethinus HOM05D000331 ORTHO05D003399 3.7e-12 74.7 98 44.9
Lj3g0021427 Lotus japonicus HOM05D000331 ORTHO05D003399 3.7e-12 74.7 78 52.6
Duzib116G0816 Durio zibethinus HOM05D000331 ORTHO05D003399 4.8e-12 74.3 82 50.0
Eucgr.G00082 Eucalyptus grandis HOM05D000331 ORTHO05D003399 6.3e-12 73.9 98 43.9
MD10G1002800 Malus domestica HOM05D000331 ORTHO05D003399 6.3e-12 73.9 99 43.4
Potri.004G228400 Populus trichocarpa HOM05D000331 ORTHO05D003399 6.3e-12 73.9 98 44.9
TPR.G5988 Trifolium pratense HOM05D000331 ORTHO05D003399 6.3e-12 73.9 97 46.4
FvH4_2g00460 Fragaria vesca HOM05D000331 ORTHO05D003399 8.3e-12 73.6 98 42.9
FAN20G2030 Fragaria x ananassa HOM05D000331 ORTHO05D003399 8.3e-12 73.6 98 42.9
FAN24G1567 Fragaria x ananassa HOM05D000331 ORTHO05D003399 8.3e-12 73.6 98 42.9
FAN24G3088 Fragaria x ananassa HOM05D000331 ORTHO05D013259 8.3e-12 73.6 98 42.9
FAN27G2727 Fragaria x ananassa HOM05D000331 ORTHO05D003399 8.3e-12 73.6 98 42.9
PGR042G0765 Punica granatum HOM05D000331 ORTHO05D003399 8.3e-12 73.6 82 48.8
FAN01G0491 Fragaria x ananassa HOM05D000331 ORTHO05D013259 1.1e-11 73.2 98 42.9
Glyma.09G002100 Glycine max HOM05D000331 ORTHO05D003399 1.1e-11 73.2 78 50.0
Gohir.D08G250800 Gossypium hirsutum HOM05D000331 ORTHO05D003399 1.1e-11 73.2 82 53.7
Gorai.004G267500 Gossypium raimondii HOM05D000331 ORTHO05D003399 1.1e-11 73.2 82 53.7
Lalb_Chr01g0008191 Lupinus albus HOM05D000331 ORTHO05D003399 1.1e-11 73.2 98 44.9
Aqoxy6G00052 Aquilegia oxysepala HOM05D000331 ORTHO05D003399 1.4e-11 72.8 96 42.7
FAN26G2692 Fragaria x ananassa HOM05D000331 ORTHO05D013259 1.4e-11 72.8 98 42.9
Glyma.12G242300 Glycine max HOM05D000331 ORTHO05D003399 1.4e-11 72.8 78 48.7
Glyma.17G001500 Glycine max HOM05D000331 ORTHO05D003399 1.4e-11 72.8 97 44.3
Atru.chr13.2541 Acer truncatum HOM05D000331 ORTHO05D003399 1.8e-11 72.4 99 44.4
Atru.chr13.2565 Acer truncatum HOM05D000331 ORTHO05D003399 1.8e-11 72.4 99 44.4
TPR.G34136 Trifolium pratense HOM05D000331 ORTHO05D003399 1.8e-11 72.4 78 48.7
VMungo1127G0260 Vigna mungo HOM05D000331 ORTHO05D003399 1.8e-11 72.4 78 50.0
Glyma.07G273100 Glycine max HOM05D000331 ORTHO05D003399 2.4e-11 72.0 97 45.4
Gohir.A08G230400 Gossypium hirsutum HOM05D000331 ORTHO05D003399 2.4e-11 72.0 82 52.4
MD05G1001600 Malus domestica HOM05D000331 ORTHO05D003399 2.4e-11 72.0 99 43.4
CSS0005378 Camellia sinensis var. sinensis HOM05D000331 ORTHO05D003399 3.1e-11 71.6 80 51.2
Haze_09996 Corylus avellana HOM05D000331 ORTHO05D003399 3.1e-11 71.6 84 45.2
DCAR_003284 Daucus carota HOM05D000331 ORTHO05D003399 3.1e-11 71.6 97 45.4
Medtr4g030140 Medicago truncatula HOM05D000331 ORTHO05D003399 3.1e-11 71.6 98 41.8
TWI18G0696 Tripterygium wilfordii HOM05D000331 ORTHO05D003399 3.1e-11 71.6 93 46.2
Migut.C01350 Erythranthe guttata HOM05D000331 ORTHO05D003399 5.4e-11 70.9 84 47.6
Ah.03g136800 Amaranthus hybridus HOM05D000331 ORTHO05D003399 7.0e-11 70.5 77 49.4
MSTRG.1580 Avicennia marina HOM05D000331 ORTHO05D003399 7.0e-11 70.5 98 43.9
Ca_13534_v3 Cicer arietinum L. HOM05D000331 ORTHO05D003399 7.0e-11 70.5 97 44.3
Sabra01G0173300 Salix brachista HOM05D000331 ORTHO05D003399 7.0e-11 70.5 98 43.9
GSVIVG01023155001 Vitis vinifera HOM05D000331 ORTHO05D003399 7.0e-11 70.5 94 41.5
Dinv29625 Davidia involucrata HOM05D000331 ORTHO05D003399 9.1e-11 70.1 98 43.9
Lalb_Chr19g0131871 Lupinus albus HOM05D000331 ORTHO05D003399 9.1e-11 70.1 78 50.0
Nitab4.5_0001278g0060 Nicotiana tabacum HOM05D000331 ORTHO05D003399 9.1e-11 70.1 100 42.0
Phvul.011G215900 Phaseolus vulgaris HOM05D000331 ORTHO05D003399 9.1e-11 70.1 78 50.0
Psat7g226360 Pisum sativum HOM05D000331 ORTHO05D003399 9.1e-11 70.1 94 47.9
Sed0016992 Sechium edule HOM05D000331 ORTHO05D003399 9.1e-11 70.1 87 48.3
Potri.003G001400 Populus trichocarpa HOM05D000331 ORTHO05D003399 1.2e-10 69.7 98 42.9
AUR62032458 Chenopodium quinoa HOM05D000331 ORTHO05D003399 1.6e-10 69.3 90 43.3
COL.COLO4_26826 Corchorus olitorius HOM05D000331 ORTHO05D003399 1.6e-10 69.3 96 44.8
Lalb_Chr03g0033801 Lupinus albus HOM05D000331 ORTHO05D003399 1.6e-10 69.3 95 47.4
Manes.07G028400 Manihot esculenta HOM05D000331 ORTHO05D003399 1.6e-10 69.3 79 49.4
Nitab4.5_0001359g0030 Nicotiana tabacum HOM05D000331 ORTHO05D003399 1.6e-10 69.3 100 42.0
PSO017G5053 Papaver somniferum HOM05D000331 ORTHO05D003399 1.6e-10 69.3 99 43.4
PSO170G2002 Papaver somniferum HOM05D000331 ORTHO05D003399 1.6e-10 69.3 99 43.4
Peaxi162Scf00688g00009 Petunia axillaris HOM05D000331 ORTHO05D003399 1.6e-10 69.3 100 42.0
GSVIVG01024187001 Vitis vinifera HOM05D000331 ORTHO05D013259 1.6e-10 69.3 94 39.4
Medtr4g134680 Medicago truncatula HOM05D000331 ORTHO05D003399 2.0e-10 68.9 97 44.3
QL02p103137 Quercus lobata HOM05D000331 ORTHO05D003399 2.7e-10 68.6 97 43.3
Sabra03G0000600 Salix brachista HOM05D000331 ORTHO05D003399 2.7e-10 68.6 98 41.8
AUR62041957 Chenopodium quinoa HOM05D000331 ORTHO05D003399 3.5e-10 68.2 90 43.3
Psat0s1492g0040 Pisum sativum HOM05D000331 ORTHO05D003399 3.5e-10 68.2 98 42.9
TWI14G0915 Tripterygium wilfordii HOM05D000331 ORTHO05D003399 3.5e-10 68.2 95 44.2
EL10Ac6g14004 Beta vulgaris HOM05D000331 ORTHO05D003399 4.5e-10 67.8 96 41.7
Hund15400 Selenicereus undatus HOM05D000331 ORTHO05D003399 4.5e-10 67.8 96 42.7
Phvul.003G075500 Phaseolus vulgaris HOM05D000331 ORTHO05D003399 5.9e-10 67.4 97 43.3
Rhsim11G0118400 Rhododendron simsii HOM05D000331 ORTHO05D003399 5.9e-10 67.4 98 46.9
CAN.G876.1 Capsicum annuum HOM05D000331 ORTHO05D003399 1.0e-09 66.6 100 42.0
VMungo1215G0321 Vigna mungo HOM05D000331 ORTHO05D003399 1.3e-09 66.2 98 43.9
Duzib192G0786 Durio zibethinus HOM05D000331 ORTHO05D003399 1.7e-09 65.9 98 39.8
Manes.10G110000 Manihot esculenta HOM05D000331 ORTHO05D003399 2.2e-09 65.5 79 48.1
Sopen01g045540 Solanum pennellii HOM05D000331 ORTHO05D003399 2.2e-09 65.5 98 40.8
GSVIVG01012272001 Vitis vinifera HOM05D000331 ORTHO05D013259 2.9e-09 65.1 93 39.8
arahy.Tifrunner.gnm1.ann1.19AV4I Arachis hypogaea HOM05D000331 ORTHO05D003399 3.8e-09 64.7 78 46.2
arahy.Tifrunner.gnm1.ann1.1TT2GW Arachis hypogaea HOM05D000331 ORTHO05D003399 3.8e-09 64.7 78 46.2
GSVIVG01036950001 Vitis vinifera HOM05D000331 ORTHO05D013259 3.8e-09 64.7 75 48.0
THA.LOC104819889 Tarenaya hassleriana HOM05D000331 ORTHO05D003399 5.0e-09 64.3 95 42.1
Atru.chr6.340 Acer truncatum HOM05D000331 ORTHO05D003399 8.5e-09 63.5 94 43.6
Ah.02g128390 Amaranthus hybridus HOM05D000331 ORTHO05D003399 8.5e-09 63.5 71 46.5
Lj5A282G68 Lonicera japonica HOM05D000331 ORTHO05D003399 8.5e-09 63.5 98 43.9
BcaC06g31789 Brassica carinata HOM05D000331 ORTHO05D003399 1.9e-08 62.4 78 47.4
PSO210G0328 Papaver somniferum HOM05D000331 ORTHO05D003399 1.9e-08 62.4 95 37.9
PSO447G0026 Papaver somniferum HOM05D000331 ORTHO05D003399 1.9e-08 62.4 95 37.9
Solyc01g103120.3 Solanum lycopersicum HOM05D000331 ORTHO05D013259 1.9e-08 62.4 98 39.8
Solyc11g039650.2 Solanum lycopersicum HOM05D000331 ORTHO05D003399 1.9e-08 62.4 100 41.0
SGA_v2.0_scaffold24G10622 Striga asiatica HOM05D000331 ORTHO05D003399 1.9e-08 62.4 97 37.1
Sopen11g017950 Solanum pennellii HOM05D000331 ORTHO05D003399 3.2e-08 61.6 100 41.0
SGA_v2.0_scaffold118G32578 Striga asiatica HOM05D000331 ORTHO05D003399 3.2e-08 61.6 98 38.8
COL.COLO4_25129 Corchorus olitorius HOM05D000331 ORTHO05D003399 5.5e-08 60.8 84 41.7
Oeu017735.1 Olea europaea HOM05D000331 ORTHO05D003399 5.5e-08 60.8 95 38.9
unitig_46.g17993 Utricularia gibba HOM05D000331 ORTHO05D003399 5.5e-08 60.8 88 37.5
HPP92_027270 Vanilla planifolia HOM05D000331 ORTHO05D003399 7.2e-08 60.5 98 37.8
SalBow7G4622 Salvia bowleyana HOM05D000331 ORTHO05D003399 9.4e-08 60.1 102 41.2
Zm00001eb371760 Zea mays HOM05D000331 ORTHO05D003399 1.2e-07 59.7 94 44.7
Zm00001eb280130 Zea mays HOM05D000331 ORTHO05D003399 1.6e-07 59.3 94 44.7
Aa31LG2G10540 Aethionema arabicum HOM05D000331 ORTHO05D003399 2.7e-07 58.5 78 47.4
FAN19G2229 Fragaria x ananassa HOM05D000228 ORTHO05D013259 2.7e-07 58.5 69 46.4
SEGI_20404 Sequoiadendron giganteum HOM05D000331 ORTHO05D003399 4.7e-07 57.8 95 43.2
Zm00001eb041920 Zea mays HOM05D000331 ORTHO05D003399 4.7e-07 57.8 101 35.6
BcaC07g38538 Brassica carinata HOM05D000331 ORTHO05D003399 6.1e-07 57.4 78 44.9
CAN.G855.44 Capsicum annuum HOM05D000331 ORTHO05D003399 8.0e-07 57.0 79 44.3
unitig_748.g7730 Utricularia gibba HOM05D000331 ORTHO05D003399 8.0e-07 57.0 100 39.0
SGA_v2.0_scaffold19G08926 Striga asiatica HOM05D000331 ORTHO05D003399 1.8e-06 55.8 96 37.5
Cc10_g09200 Coffea canephora HOM05D000331 ORTHO05D003399 2.3e-06 55.5 99 38.4
Prupe.8G004400 Prunus persica HOM05D000331 ORTHO05D003399 2.3e-06 55.5 97 38.1
THA.LOC104799784 Tarenaya hassleriana HOM05D000331 ORTHO05D003399 3.0e-06 55.1 84 39.3
Zm00001eb253990 Zea mays HOM05D000331 ORTHO05D003399 4.0e-06 54.7 98 40.8
ECA240G2161 Erigeron canadensis HOM05D000331 ORTHO05D003399 6.8e-06 53.9 77 42.9


User provided reference genes

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