Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI11_g02479_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1385.2 715 100.0
MBI11_g07996_MAGBIO Magnolia biondii HOM05D003977 ORTHO05D004536 0.0e+00 1194.1 757 86.0
TAR622G1067 Trochodendron aralioides HOM05D003977 ORTHO05D004536 2.7e-284 981.9 739 72.9
Nn4g22094 Nelumbo nucifera HOM05D003977 ORTHO05D004536 5.8e-279 964.1 761 70.3
Nn3g16238 Nelumbo nucifera HOM05D003977 ORTHO05D004536 1.2e-276 956.4 753 70.4
Dinv14623 Davidia involucrata HOM05D003977 ORTHO05D004536 1.1e-272 943.3 737 70.8
Dinv06987 Davidia involucrata HOM05D003977 ORTHO05D004536 2.3e-272 942.2 739 70.2
Cfa010949 Carpinus fangiana HOM05D003977 ORTHO05D004536 4.1e-269 931.4 738 69.6
GSVIVG01035560001 Vitis vinifera HOM05D003977 ORTHO05D004536 2.7e-268 928.7 741 69.1
ClCG05G026990 Citrullus lanatus HOM05D003977 ORTHO05D004536 4.6e-268 927.9 743 68.0
Haze_02995 Corylus avellana HOM05D003977 ORTHO05D004536 6.0e-268 927.5 748 68.7
CsaV3_5G036930 Cucumis sativus L. HOM05D003977 ORTHO05D004536 3.9e-267 924.9 740 68.0
QL93p0049_0031 Quercus lobata HOM05D003977 ORTHO05D004536 3.9e-267 924.9 743 69.2
QL04p021130 Quercus lobata HOM05D003977 ORTHO05D004536 1.1e-266 923.3 743 69.2
Ciclev10000128m.g Citrus clementina HOM05D003977 ORTHO05D004536 1.9e-266 922.5 754 67.9
MELO3C012492.2 Cucumis melo HOM05D003977 ORTHO05D004536 2.5e-266 922.2 755 66.9
Aqoxy5G03020 Aquilegia oxysepala HOM05D003977 ORTHO05D004536 3.3e-266 921.8 757 65.9
FAN06G3123 Fragaria x ananassa HOM05D003977 ORTHO05D004536 5.6e-266 921.0 736 69.3
FAN01G0005 Fragaria x ananassa HOM05D003977 ORTHO05D004536 1.2e-265 919.8 736 69.0
FAN10G3794 Fragaria x ananassa HOM05D003977 ORTHO05D004536 1.6e-265 919.5 736 68.9
RcHm_v2.0_Chr1g0326641 Rosa chinensis HOM05D003977 ORTHO05D004536 3.6e-265 918.3 740 69.2
CiPaw.06G056400 Carya illinoinensis HOM05D003977 ORTHO05D004536 1.1e-264 916.8 739 68.7
Glyma.15G230300 Glycine max HOM05D003977 ORTHO05D004536 1.8e-264 916.0 742 68.3
Atru.chr12.1306 Acer truncatum HOM05D003977 ORTHO05D004536 2.3e-264 915.6 737 67.4
FvH4_7g03720 Fragaria vesca HOM05D003977 ORTHO05D004536 6.8e-264 914.1 740 68.9
PSO017G2490 Papaver somniferum HOM05D003977 ORTHO05D004536 6.8e-264 914.1 781 64.9
Glyma.13G192400 Glycine max HOM05D003977 ORTHO05D004536 1.3e-262 909.8 741 68.3
PSO478G2410 Papaver somniferum HOM05D003977 ORTHO05D004536 1.3e-262 909.8 781 64.4
Sed0027944 Sechium edule HOM05D003977 ORTHO05D004536 1.3e-262 909.8 735 67.3
FAN03G2084 Fragaria x ananassa HOM05D003977 ORTHO05D004536 1.1e-261 906.7 736 68.6
TWI38G1846 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 1.1e-261 906.7 737 69.1
CiPaw.14G009300 Carya illinoinensis HOM05D003977 ORTHO05D004536 2.1e-260 902.5 737 67.6
PGSC0003DMG400011581 Solanum tuberosum HOM05D003977 ORTHO05D004536 1.0e-259 900.2 746 66.1
Lalb_Chr03g0032201 Lupinus albus HOM05D003977 ORTHO05D004536 1.7e-259 899.4 742 67.4
Ca_23978_v3 Cicer arietinum L. HOM05D003977 ORTHO05D004536 3.0e-259 898.7 746 67.2
arahy.Tifrunner.gnm1.ann1.I0XR4S Arachis hypogaea HOM05D003977 ORTHO05D004536 3.9e-259 898.3 739 67.4
arahy.Tifrunner.gnm1.ann1.Q9GEU7 Arachis hypogaea HOM05D003977 ORTHO05D004536 1.5e-258 896.3 739 67.4
Duzib114G0684 Durio zibethinus HOM05D003977 ORTHO05D004536 1.9e-258 896.0 718 69.1
Manes.16G045800 Manihot esculenta HOM05D003977 ORTHO05D004536 2.5e-258 895.6 740 67.2
MSTRG.444 Avicennia marina HOM05D003977 ORTHO05D004536 3.3e-258 895.2 731 67.9
MD07G1045800 Malus domestica HOM05D003977 ORTHO05D004536 3.3e-258 895.2 740 67.4
Rhsim12G0015900 Rhododendron simsii HOM05D003977 ORTHO05D004536 4.3e-258 894.8 739 67.7
Peaxi162Scf00047g01540 Petunia axillaris HOM05D003977 ORTHO05D004536 9.6e-258 893.6 746 66.2
CANSAT56G0684 Cannabis sativa HOM05D003977 ORTHO05D004536 1.6e-257 892.9 740 67.2
THA.LOC104799327 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 1.6e-257 892.9 744 66.7
Prupe.2G042800 Prunus persica HOM05D003977 ORTHO05D004536 2.1e-257 892.5 740 67.7
Lj3g0027102 Lotus japonicus HOM05D003977 ORTHO05D004536 2.8e-257 892.1 778 65.0
Glyma.04G192200 Glycine max HOM05D003977 ORTHO05D004536 4.7e-257 891.3 742 67.5
Phvul.011G201200 Phaseolus vulgaris HOM05D003977 ORTHO05D004536 4.7e-257 891.3 741 66.9
vmacro01007 Vaccinium macrocarpon HOM05D003977 ORTHO05D004536 4.7e-257 891.3 739 67.7
Sed0009106 Sechium edule HOM05D003977 ORTHO05D004536 1.1e-256 890.2 738 66.7
Manes.03G097800 Manihot esculenta HOM05D003977 ORTHO05D004536 1.8e-256 889.4 740 66.9
Psat4g145000 Pisum sativum HOM05D003977 ORTHO05D004536 3.1e-256 888.6 746 66.1
Sopen09g034250 Solanum pennellii HOM05D003977 ORTHO05D004536 4.0e-256 888.3 746 65.7
Solyc09g091280.4 Solanum lycopersicum HOM05D003977 ORTHO05D004536 5.2e-256 887.9 746 65.7
TWI15G1223 Tripterygium wilfordii HOM05D003977 ORTHO05D004536 5.2e-256 887.9 738 67.1
Cc11_g14880 Coffea canephora HOM05D003977 ORTHO05D004536 8.9e-256 887.1 735 66.4
TPR.G8543 Trifolium pratense HOM05D003977 ORTHO05D004536 8.9e-256 887.1 755 65.8
Medtr8g040560 Medicago truncatula HOM05D003977 ORTHO05D004536 1.2e-255 886.7 747 66.5
VMungo1127G0455 Vigna mungo HOM05D003977 ORTHO05D004536 1.2e-255 886.7 742 66.6
ATR0582G127 Amborella trichopoda HOM05D003977 ORTHO05D004536 3.4e-255 885.2 733 65.9
Potri.001G031400 Populus trichocarpa HOM05D003977 ORTHO05D004536 4.4e-255 884.8 752 66.8
Aa31LG7G12510 Aethionema arabicum HOM05D003977 ORTHO05D004536 5.8e-255 884.4 737 66.5
Lj1g0022785 Lotus japonicus HOM05D003977 ORTHO05D004536 7.6e-255 884.0 745 66.3
Migut.K01127 Erythranthe guttata HOM05D003977 ORTHO05D004536 1.7e-254 882.9 736 66.3
Lalb_Chr19g0132941 Lupinus albus HOM05D003977 ORTHO05D004536 1.7e-254 882.9 742 65.8
Duzib106G1228 Durio zibethinus HOM05D003977 ORTHO05D004536 3.8e-254 881.7 743 66.4
CSS0046878 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 1.1e-253 880.2 739 67.0
MD02G1277700 Malus domestica HOM05D003977 ORTHO05D004536 1.4e-253 879.8 718 68.0
EL10Ac1g02273 Beta vulgaris HOM05D003977 ORTHO05D004536 2.1e-252 875.9 741 65.9
THA.LOC104826752 Tarenaya hassleriana HOM05D003977 ORTHO05D004536 2.7e-252 875.5 746 65.7
CAN.G1588.14 Capsicum annuum HOM05D003977 ORTHO05D004536 4.6e-252 874.8 746 64.7
Gohir.A05G399500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 5.1e-251 871.3 744 65.6
DCAR_004259 Daucus carota HOM05D003977 ORTHO05D004536 1.5e-250 869.8 752 64.2
DCAR_004260 Daucus carota HOM05D003977 ORTHO05D004536 1.5e-250 869.8 752 64.2
TAR629G1670 Trochodendron aralioides HOM05D003977 ORTHO05D004536 1.5e-250 869.8 677 69.3
Sabra01G0022500 Salix brachista HOM05D003977 ORTHO05D004536 9.6e-250 867.1 798 62.9
Carub.0003s1164 Capsella rubella HOM05D003977 ORTHO05D004536 1.3e-249 866.7 739 66.0
Eucgr.G03211 Eucalyptus grandis HOM05D003977 ORTHO05D004536 2.1e-249 865.9 738 65.3
Sp3g10500 Schrenkiella parvula HOM05D003977 ORTHO05D004536 4.8e-249 864.8 738 65.7
Gohir.D04G016500 Gossypium hirsutum HOM05D003977 ORTHO05D004536 5.3e-248 861.3 745 64.6
Gorai.012G019200 Gossypium raimondii HOM05D003977 ORTHO05D004536 6.9e-248 860.9 745 64.6
COL.COLO4_20737 Corchorus olitorius HOM05D003977 ORTHO05D004536 4.5e-247 858.2 750 64.1
HanXRQChr06g0175421 Helianthus annuus HOM05D003977 ORTHO05D004536 4.5e-247 858.2 746 65.7
CDE09G1395 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 1.3e-246 856.7 740 65.8
Gorai.012G019100 Gossypium raimondii HOM05D003977 ORTHO05D004536 1.3e-246 856.7 750 64.3
AUR62041503 Chenopodium quinoa HOM05D003977 ORTHO05D004536 2.9e-246 855.5 742 64.7
Gohir.D04G016400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 4.9e-246 854.7 743 64.7
AL3G23940 Arabidopsis lyrata HOM05D003977 ORTHO05D004536 6.4e-246 854.4 738 65.0
Gohir.A05G399400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 6.4e-246 854.4 745 64.3
DCAR_008196 Daucus carota HOM05D003977 ORTHO05D004536 1.4e-245 853.2 737 64.3
AT3G12280 Arabidopsis thaliana HOM05D003977 ORTHO05D004536 3.2e-245 852.0 738 65.0
PGR031G0564 Punica granatum HOM05D003977 ORTHO05D004536 3.2e-245 852.0 758 62.8
SGA_v2.0_scaffold81G25979 Striga asiatica HOM05D003977 ORTHO05D004536 5.4e-245 851.3 743 63.8
Prupe.8G086800 Prunus persica HOM05D003977 ORTHO05D004536 9.3e-245 850.5 744 64.9
AUR62035738 Chenopodium quinoa HOM05D003977 ORTHO05D004536 3.5e-244 848.6 742 64.4
SalBow2G0230 Salvia bowleyana HOM05D003977 ORTHO05D004536 4.6e-244 848.2 735 64.1
AUR62033843 Chenopodium quinoa HOM05D003977 ORTHO05D004536 6.0e-244 847.8 742 64.2
Thecc.10G142800 Theobroma cacao HOM05D003977 ORTHO05D004536 1.3e-243 846.7 737 64.6
CARHR086830 Cardamine hirsuta HOM05D003977 ORTHO05D004536 3.9e-243 845.1 737 64.2
C01p53050 Brassica napus HOM05D003977 ORTHO05D004536 5.1e-243 844.7 737 64.0
Hund13302 Selenicereus undatus HOM05D003977 ORTHO05D004536 1.9e-242 842.8 756 63.0
BcaC09g48227 Brassica carinata HOM05D003977 ORTHO05D004536 2.5e-242 842.4 736 63.9
BolC1t05248H Brassica oleracea HOM05D003977 ORTHO05D004536 3.3e-242 842.0 737 63.8
Sc02g0008490 Simmondsia chinensis HOM05D003977 ORTHO05D004536 5.6e-242 841.3 738 64.4
A05p37080 Brassica napus HOM05D003977 ORTHO05D004536 1.3e-241 840.1 740 63.8
Thhalv10019977m.g Eutrema salsugineum HOM05D003977 ORTHO05D004536 1.4e-240 836.6 737 63.6
ECA246G4717 Erigeron canadensis HOM05D003977 ORTHO05D004536 6.9e-240 834.3 739 64.3
C05p55510 Brassica napus HOM05D003977 ORTHO05D004536 1.2e-239 833.6 740 63.2
BolC5t34217H Brassica oleracea HOM05D003977 ORTHO05D004536 1.2e-239 833.6 741 63.2
Ah.05g166690 Amaranthus hybridus HOM05D003977 ORTHO05D004536 4.5e-239 831.6 780 59.9
HPP92_000321 Vanilla planifolia HOM05D003977 ORTHO05D004536 4.9e-238 828.2 765 61.2
Os08g0538700 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 3.0e-235 818.9 760 62.5
CDE02G2393 Ceratophyllum demersum HOM05D003977 ORTHO05D004536 7.4e-234 814.3 712 66.3
BcaB04g18687 Brassica carinata HOM05D003977 ORTHO05D004536 9.6e-234 813.9 739 62.0
Lsat_1_v5_gn_3_33021 Lactuca sativa HOM05D003977 ORTHO05D004536 2.8e-233 812.4 746 63.1
Zm00001eb037120 Zea mays HOM05D003977 ORTHO05D004536 1.1e-232 810.4 742 62.4
C03p45560 Brassica napus HOM05D003977 ORTHO05D004536 2.4e-232 809.3 738 61.9
BolC3t16833H Brassica oleracea HOM05D003977 ORTHO05D004536 3.1e-232 808.9 738 62.1
Gohir.D05G284400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 7.1e-229 797.7 743 61.2
Gorai.009G299000 Gossypium raimondii HOM05D003977 ORTHO05D004536 7.1e-229 797.7 743 61.2
A03p37570 Brassica napus HOM05D003977 ORTHO05D004536 9.3e-229 797.3 736 61.7
Gohir.A05G283400 Gossypium hirsutum HOM05D003977 ORTHO05D004536 8.7e-227 790.8 720 62.6
BraA03t12911Z Brassica rapa HOM05D003977 ORTHO05D004536 3.3e-226 788.9 754 60.1
PSO478G5179 Papaver somniferum HOM05D003977 ORTHO05D004536 4.5e-223 778.5 733 59.9
unitig_26.g10435 Utricularia gibba HOM05D003977 ORTHO05D004536 3.4e-215 752.3 726 59.5
SEGI_35648 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 1.4e-213 746.9 790 56.6
BcaC01g04055 Brassica carinata HOM05D003977 ORTHO05D004536 1.5e-202 710.3 660 59.8
Nitab4.5_0002182g0050 Nicotiana tabacum HOM05D003977 ORTHO05D004536 1.8e-195 686.8 738 56.8
Nitab4.5_0008702g0020 Nicotiana tabacum HOM05D003977 ORTHO05D004536 1.3e-193 680.6 741 55.6
Os11g0533500 Oryza sativa ssp. japonica HOM05D003977 ORTHO05D004536 3.4e-186 656.0 732 52.9
CSS0026343 Camellia sinensis var. sinensis HOM05D003977 ORTHO05D004536 8.3e-185 651.4 731 55.0
Zm00001eb113470 Zea mays HOM05D003977 ORTHO05D004536 1.1e-184 651.0 754 51.9
Zm00001eb197990 Zea mays HOM05D003977 ORTHO05D004536 1.1e-184 651.0 728 52.3
Lj3A1077G55 Lonicera japonica HOM05D003977 ORTHO05D004536 7.0e-184 648.3 685 56.1
Zm00001eb198220 Zea mays HOM05D003977 ORTHO05D004536 2.9e-182 642.9 592 61.1
SEGI_33786 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 3.7e-177 625.9 651 56.2
Mapoly0131s0020 Marchantia polymorpha HOM05D003977 ORTHO05D004536 1.9e-173 613.6 758 49.2
Ciclev10003102m.g Citrus clementina HOM05D003977 ORTHO05D004536 5.6e-165 585.5 675 55.4
AagrBONN_evm.TU.Sc2ySwM_362.2961 Anthoceros agrestis HOM05D003977 ORTHO05D004536 9.5e-165 584.7 758 47.2
Cpa.g.sc169.40 Carica papaya HOM05D003977 ORTHO05D004536 3.7e-161 572.8 675 51.9
Pp3c15_2800 Physcomitrium patens HOM05D003977 ORTHO05D004536 2.7e-159 566.6 728 47.1
Pp3c9_2440 Physcomitrium patens HOM05D003977 ORTHO05D004536 1.8e-155 553.9 727 45.7
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.2e-148 531.2 712 49.6
SMO134G0004 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 5.8e-138 495.7 700 44.7
GSVIVG01032958001 Vitis vinifera HOM05D003977 ORTHO05D004536 5.4e-136 489.2 621 49.6
Pp3c19_9580 Physcomitrium patens HOM05D003977 ORTHO05D004536 8.4e-129 465.3 599 47.2
Ciclev10014630m.g Citrus clementina HOM05D003977 ORTHO05D004536 6.7e-118 429.1 617 45.5
SMO141G0281 Selaginella moellendorffii HOM05D003977 ORTHO05D004536 8.2e-116 422.2 547 48.6
Manes.11G074000 Manihot esculenta HOM05D003977 ORTHO05D004536 2.4e-115 420.6 665 42.9
unitig_22.g6370 Utricularia gibba HOM05D003977 ORTHO05D004536 2.2e-105 387.5 370 60.3
Hma1.2p1_0073F.1_g038600 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 2.2e-92 344.4 291 66.3
CBR_g45825 Chara braunii HOM05D003977 ORTHO05D004536 2.6e-90 337.4 878 32.3
SEGI_04896 Sequoiadendron giganteum HOM05D003977 ORTHO05D004536 2.5e-88 330.9 314 56.7
Atru.chr6.2718 Acer truncatum HOM05D003977 ORTHO05D004536 5.2e-86 323.2 574 40.4
Hma1.2p1_0164F.1_g073080 Hydrangea macrophylla HOM05D003977 ORTHO05D004536 1.3e-81 308.5 209 78.5
unitig_22.g6371 Utricularia gibba HOM05D003977 ORTHO05D004536 2.2e-73 281.2 240 63.8
PRCOL_00001859 Prasinoderma coloniale HOM05D003977 ORTHO05D004536 1.1e-67 262.3 636 32.9
HanXRQChr04g0106401 Helianthus annuus HOM05D003977 ORTHO05D004536 1.6e-58 231.9 293 49.1
QL04p021333 Quercus lobata HOM05D003977 ORTHO05D004536 2.1e-55 221.5 226 58.4
MCO08G295 Micromonas commoda HOM05D003977 ORTHO05D004536 2.9e-52 211.1 512 30.7
Pp3c19_9550 Physcomitrium patens HOM05D003977 ORTHO05D004536 5.6e-48 196.8 176 55.1
BraA05t22505Z Brassica rapa HOM05D003977 ORTHO05D004536 2.1e-39 168.3 137 64.2
BolC2t11042H Brassica oleracea HOM05D003977 ORTHO05D004536 6.8e-38 163.3 150 61.3
C02p49640 Brassica napus HOM05D003977 ORTHO05D004536 1.5e-37 162.2 137 65.0
Cre06.g255450 Chlamydomonas reinhardtii HOM05D003977 ORTHO05D004536 7.1e-35 153.3 646 25.2
Oeu034276.1 Olea europaea HOM05D003977 ORTHO05D004536 1.5e-24 119.0 181 44.2
Rhsim02G0185900 Rhododendron simsii HOM05D016728 ORTHO05D340288 1.4e-14 85.9 62 72.6
Hma1.2p1_0417F.1_g148820 Hydrangea macrophylla HOM05D000825 ORTHO05D003684 1.7e-12 79.0 53 79.2


User provided reference genes

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