Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI09_g17152_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.6e-247 859.0 425 100.0
MBI05_g32275_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 5.4e-192 674.5 421 79.6
TAR376G0337 Trochodendron aralioides HOM05D004078 ORTHO05D004823 4.0e-187 658.3 425 75.5
Nn5g30856 Nelumbo nucifera HOM05D004078 ORTHO05D004823 2.1e-183 646.0 422 75.1
TAR628G1171 Trochodendron aralioides HOM05D004078 ORTHO05D004823 9.6e-181 637.1 414 75.4
Haze_22719 Corylus avellana HOM05D004078 ORTHO05D004823 1.8e-179 632.9 414 71.7
Cfa014016 Carpinus fangiana HOM05D004078 ORTHO05D004823 5.3e-179 631.3 414 71.5
Aqoxy6G01920 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 6.9e-179 630.9 411 73.5
Rhsim06G0011500 Rhododendron simsii HOM05D004078 ORTHO05D004823 1.2e-178 630.2 414 71.5
Manes.18G008900 Manihot esculenta HOM05D004078 ORTHO05D004823 1.3e-177 626.7 414 72.5
CSS0030403 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.1e-176 623.6 406 73.2
Dinv31900 Davidia involucrata HOM05D004078 ORTHO05D004823 1.2e-175 620.2 413 72.4
CiPaw.07G143000 Carya illinoinensis HOM05D004078 ORTHO05D004823 2.3e-174 615.9 420 70.5
Thecc.08G052700 Theobroma cacao HOM05D004078 ORTHO05D004823 3.3e-173 612.1 414 71.3
Potri.005G246300 Populus trichocarpa HOM05D004078 ORTHO05D004823 7.4e-173 610.9 415 71.6
Duzib116G0649 Durio zibethinus HOM05D004078 ORTHO05D004823 2.1e-172 609.4 414 70.8
QL02p013034 Quercus lobata HOM05D004078 ORTHO05D004823 2.8e-172 609.0 413 69.0
Atru.chr13.207 Acer truncatum HOM05D004078 ORTHO05D004823 8.1e-172 607.4 414 69.1
Sabra05G0190400 Salix brachista HOM05D004078 ORTHO05D004823 8.1e-172 607.4 415 70.8
COL.COLO4_26076 Corchorus olitorius HOM05D004078 ORTHO05D004823 1.1e-171 607.1 410 71.5
Duzib093G0900 Durio zibethinus HOM05D004078 ORTHO05D004823 6.9e-171 604.4 414 69.8
CANSAT25G3530 Cannabis sativa HOM05D004078 ORTHO05D004823 1.1e-165 587.0 407 67.6
ATR0661G241 Amborella trichopoda HOM05D004078 ORTHO05D004823 2.4e-163 579.3 410 68.8
Hma1.2p1_0023F.1_g015860 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 5.3e-163 578.2 414 67.6
SEGI_37656 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 8.4e-161 570.9 418 67.7
SEGI_03953 Sequoiadendron giganteum HOM05D004078 ORTHO05D004823 1.9e-160 569.7 416 67.8
PSO675G8915 Papaver somniferum HOM05D004078 ORTHO05D004823 2.2e-156 556.2 421 64.8
Potri.002G015800 Populus trichocarpa HOM05D004078 ORTHO05D004823 3.1e-155 552.4 382 69.4
Dinv31901 Davidia involucrata HOM05D004078 ORTHO05D004823 1.2e-154 550.4 411 64.7
PSO541G4079 Papaver somniferum HOM05D004078 ORTHO05D004823 2.6e-154 549.3 422 64.0
Actinidia16270 Actinidia chinensis HOM05D004078 ORTHO05D004823 3.4e-154 548.9 410 64.6
Hma1.2p1_0023F.1_g015830 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 3.4e-154 548.9 413 66.3
Thecc.08G052600 Theobroma cacao HOM05D004078 ORTHO05D004823 3.8e-153 545.4 425 63.1
Actinidia17020 Actinidia chinensis HOM05D004078 ORTHO05D004823 3.2e-152 542.3 363 71.3
ClCG08G013990 Citrullus lanatus HOM05D004078 ORTHO05D004823 4.2e-152 542.0 421 62.7
MELO3C011335.2 Cucumis melo HOM05D004078 ORTHO05D004823 9.4e-152 540.8 417 63.1
TWI12G0461 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.6e-151 540.0 405 65.7
Hma1.2p1_0028F.1_g017320 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 3.6e-151 538.9 404 65.6
Lalb_Chr08g0246321 Lupinus albus HOM05D004078 ORTHO05D004823 1.9e-149 533.1 411 62.0
CAN.G311.82 Capsicum annuum HOM05D004078 ORTHO05D004823 9.7e-149 530.8 424 62.0
PGSC0003DMG400009959 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.7e-148 530.0 399 64.2
Aqoxy5G01089 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.1e-147 527.3 419 63.7
Sopen04g035680 Solanum pennellii HOM05D004078 ORTHO05D004823 6.9e-147 524.6 394 64.2
Solyc04g082030.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 9.1e-147 524.2 394 64.2
Sed0013676 Sechium edule HOM05D004078 ORTHO05D004823 1.2e-146 523.9 393 64.1
PSO423G0267 Papaver somniferum HOM05D004078 ORTHO05D004823 1.5e-146 523.5 414 62.3
Glyma.04G020200 Glycine max HOM05D004078 ORTHO05D004823 2.0e-146 523.1 415 60.2
TWI56G1016 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 2.6e-146 522.7 407 64.1
Glyma.06G020300 Glycine max HOM05D004078 ORTHO05D004823 7.7e-146 521.2 423 59.6
Peaxi162Scf00174g00105 Petunia axillaris HOM05D004078 ORTHO05D004823 1.0e-145 520.8 401 63.8
Phvul.009G020500 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 2.1e-143 513.1 417 58.8
Phvul.009G020400 Phaseolus vulgaris HOM05D004078 ORTHO05D004823 1.0e-142 510.8 417 58.8
TWI56G0120 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.4e-142 510.4 409 63.1
TWI56G0218 Tripterygium wilfordii HOM05D004078 ORTHO05D004823 1.4e-142 510.4 409 63.1
VMungo1309G0831 Vigna mungo HOM05D004078 ORTHO05D004823 3.9e-142 508.8 406 59.6
Nn5g27926 Nelumbo nucifera HOM05D004078 ORTHO05D004823 4.4e-141 505.4 415 61.7
Lalb_Chr23g0265921 Lupinus albus HOM05D004078 ORTHO05D004823 2.2e-140 503.1 402 60.7
arahy.Tifrunner.gnm1.ann1.GGEE3T Arachis hypogaea HOM05D004078 ORTHO05D004823 1.8e-139 500.0 393 60.8
Atru.chr13.206 Acer truncatum HOM05D004078 ORTHO05D004823 9.1e-139 497.7 411 58.2
Aqoxy2G02302 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 2.0e-138 496.5 376 63.8
Nn5g27925 Nelumbo nucifera HOM05D004078 ORTHO05D004823 4.5e-138 495.4 417 60.9
Aqoxy2G02303 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 1.1e-136 490.7 376 63.6
Duzib177G0502 Durio zibethinus HOM05D004078 ORTHO05D004823 1.1e-136 490.7 386 62.7
Nitab4.5_0003280g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.9e-136 490.0 372 63.7
TAR091G0003 Trochodendron aralioides HOM05D004078 ORTHO05D004823 2.5e-136 489.6 321 73.2
Sed0015343 Sechium edule HOM05D004078 ORTHO05D004823 9.4e-136 487.6 401 59.1
TPR.G38148 Trifolium pratense HOM05D004078 ORTHO05D004823 2.1e-135 486.5 419 56.3
Medtr3g114870 Medicago truncatula HOM05D004078 ORTHO05D004823 5.2e-134 481.9 399 58.1
Duzib177G0280 Durio zibethinus HOM05D004078 ORTHO05D004823 1.1e-133 480.7 383 61.6
Zm00001eb319850 Zea mays HOM05D004078 ORTHO05D004823 2.0e-133 479.9 409 57.9
Os09g0543400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 3.3e-133 479.2 408 59.3
Thecc.05G287800 Theobroma cacao HOM05D004078 ORTHO05D004823 2.8e-132 476.1 404 57.9
TPR.G38230 Trifolium pratense HOM05D004078 ORTHO05D004823 4.8e-132 475.3 402 57.2
Gohir.A11G254600 Gossypium hirsutum HOM05D004078 ORTHO05D004823 4.1e-131 472.2 386 59.6
Gorai.007G284300 Gossypium raimondii HOM05D004078 ORTHO05D004823 5.3e-131 471.9 386 59.1
Lj1g0007451 Lotus japonicus HOM05D004078 ORTHO05D004823 5.3e-131 471.9 411 56.7
Gohir.D11G264300 Gossypium hirsutum HOM05D004078 ORTHO05D004823 7.0e-131 471.5 386 59.1
Gohir.A11G254700 Gossypium hirsutum HOM05D004078 ORTHO05D004823 3.8e-129 465.7 396 58.1
Gorai.007G284400 Gossypium raimondii HOM05D004078 ORTHO05D004823 3.8e-129 465.7 384 58.9
CsaV3_2G024480 Cucumis sativus L. HOM05D004078 ORTHO05D004823 1.9e-128 463.4 334 66.5
COL.COLO4_15291 Corchorus olitorius HOM05D004078 ORTHO05D004823 8.0e-127 458.0 404 57.7
Psat0s1018g0040 Pisum sativum HOM05D004078 ORTHO05D004823 1.0e-126 457.6 413 55.4
TPR.G27977 Trifolium pratense HOM05D004078 ORTHO05D004823 1.2e-125 454.1 414 53.1
TPR.G30061 Trifolium pratense HOM05D004078 ORTHO05D004823 3.7e-124 449.1 416 52.9
COL.COLO4_15294 Corchorus olitorius HOM05D004078 ORTHO05D004823 4.8e-124 448.7 393 58.0
Zm00001eb331690 Zea mays HOM05D004078 ORTHO05D004823 4.8e-124 448.7 408 55.4
COL.COLO4_15293 Corchorus olitorius HOM05D004078 ORTHO05D004823 5.9e-122 441.8 397 55.9
Ca_15452_v3 Cicer arietinum L. HOM05D004078 ORTHO05D004823 1.3e-121 440.7 351 60.4
RcHm_v2.0_Chr4g0431831 Rosa chinensis HOM05D004078 ORTHO05D004823 1.1e-120 437.6 380 59.2
Aqoxy5G01091 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 3.2e-120 436.0 404 55.2
Ciclev10031824m.g Citrus clementina HOM05D004078 ORTHO05D004823 4.2e-120 435.6 380 58.2
MD05G1034000 Malus domestica HOM05D004078 ORTHO05D004823 5.5e-120 435.3 413 53.8
FvH4_4g24730 Fragaria vesca HOM05D004078 ORTHO05D004823 1.2e-119 434.1 401 57.1
Prupe.8G044900 Prunus persica HOM05D004078 ORTHO05D004823 1.2e-119 434.1 413 53.3
CSS0037182 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 2.7e-119 433.0 416 54.1
RcHm_v2.0_Chr3g0485811 Rosa chinensis HOM05D004078 ORTHO05D004823 2.7e-119 433.0 398 56.8
FvH4_4g24750 Fragaria vesca HOM05D004078 ORTHO05D004823 3.6e-119 432.6 417 54.4
CSS0003326 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 4.7e-119 432.2 416 53.8
Nitab4.5_0001270g0090 Nicotiana tabacum HOM05D004078 ORTHO05D004823 4.7e-119 432.2 399 56.9
MSTRG.1142 Avicennia marina HOM05D004078 ORTHO05D004823 1.4e-118 430.6 351 61.8
RcHm_v2.0_Chr3g0485831 Rosa chinensis HOM05D004078 ORTHO05D004823 1.4e-118 430.6 394 56.1
FAN07G1093 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.8e-118 430.3 416 54.8
Ciclev10020253m.g Citrus clementina HOM05D004078 ORTHO05D004823 1.2e-117 427.6 418 53.8
FvH4_4g27890 Fragaria vesca HOM05D004078 ORTHO05D004823 1.5e-117 427.2 397 55.2
Rhsim06G0011400 Rhododendron simsii HOM05D004078 ORTHO05D004823 1.5e-117 427.2 409 55.3
FAN12G4190 Fragaria x ananassa HOM05D004078 ORTHO05D004823 2.6e-117 426.4 397 54.9
FAN17G0799 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.7e-116 423.7 395 55.7
FvH4_4g24751 Fragaria vesca HOM05D004078 ORTHO05D004823 6.3e-116 421.8 374 58.0
FAN12G0110 Fragaria x ananassa HOM05D004078 ORTHO05D004823 1.1e-115 421.0 374 58.0
RcHm_v2.0_Chr3g0485901 Rosa chinensis HOM05D004078 ORTHO05D004823 1.4e-115 420.6 416 54.3
Manes.13G003000 Manihot esculenta HOM05D004078 ORTHO05D004823 6.6e-113 411.8 421 51.5
Zm00001eb114090 Zea mays HOM05D004078 ORTHO05D004823 1.5e-112 410.6 413 52.1
Solyc03g098300.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 1.4e-110 404.1 398 52.5
FAN12G2492 Fragaria x ananassa HOM05D004078 ORTHO05D004823 6.8e-110 401.7 404 54.5
CAN.G637.4 Capsicum annuum HOM05D004078 ORTHO05D004823 8.9e-110 401.4 390 52.6
Sopen03g029060 Solanum pennellii HOM05D004078 ORTHO05D004823 8.9e-110 401.4 398 52.0
Nitab4.5_0001180g0140 Nicotiana tabacum HOM05D004078 ORTHO05D004823 1.2e-109 401.0 389 53.5
Solyc03g098310.1 Solanum lycopersicum HOM05D004078 ORTHO05D004823 1.5e-109 400.6 398 51.8
Thecc.06G067400 Theobroma cacao HOM05D004078 ORTHO05D004823 5.7e-109 398.7 315 62.2
Nitab4.5_0005973g0010 Nicotiana tabacum HOM05D004078 ORTHO05D004823 7.5e-109 398.3 388 53.4
Prupe.8G048200 Prunus persica HOM05D004078 ORTHO05D004823 9.8e-109 397.9 358 55.3
Peaxi162Scf00171g10044 Petunia axillaris HOM05D004078 ORTHO05D004823 1.7e-108 397.1 401 51.6
Sopen03g029040 Solanum pennellii HOM05D004078 ORTHO05D004823 7.0e-107 391.7 398 50.8
Sopen03g029020 Solanum pennellii HOM05D004078 ORTHO05D004823 9.2e-107 391.3 398 50.8
Sopen03g029050 Solanum pennellii HOM05D004078 ORTHO05D004823 9.2e-107 391.3 398 50.8
TPR.G27976 Trifolium pratense HOM05D004078 ORTHO05D004823 4.5e-106 389.0 420 48.3
Gohir.D11G264400 Gossypium hirsutum HOM05D004078 ORTHO05D004823 7.8e-106 388.3 330 57.0
MBI18_g05694_MAGBIO Magnolia biondii HOM05D004078 ORTHO05D004823 1.3e-105 387.5 401 46.4
Sopen03g029030 Solanum pennellii HOM05D004078 ORTHO05D004823 2.9e-105 386.3 382 51.6
Medtr3g114890 Medicago truncatula HOM05D004078 ORTHO05D004823 8.6e-105 384.8 397 50.9
SMO171G0020 Selaginella moellendorffii HOM05D004078 ORTHO05D004823 1.5e-101 374.0 368 53.5
TAR627G0362 Trochodendron aralioides HOM05D004078 ORTHO05D004823 7.5e-101 371.7 406 45.8
AagrBONN_evm.TU.Sc2ySwM_340.331 Anthoceros agrestis HOM05D004078 ORTHO05D004823 7.0e-99 365.2 370 51.4
RcHm_v2.0_Chr7g0227121 Rosa chinensis HOM05D004078 ORTHO05D004823 1.6e-98 364.0 381 52.5
MD05G1036600 Malus domestica HOM05D004078 ORTHO05D004823 5.0e-97 359.0 380 50.3
CSS0015589 Camellia sinensis var. sinensis HOM05D004078 ORTHO05D004823 1.9e-96 357.1 411 48.2
Thecc.05G287700 Theobroma cacao HOM05D004078 ORTHO05D004823 5.6e-96 355.5 289 60.2
Mapoly0001s0543 Marchantia polymorpha HOM05D004078 ORTHO05D000931 2.1e-95 353.6 376 50.5
Peaxi162Scf00479g00072 Petunia axillaris HOM05D004078 ORTHO05D004823 6.2e-95 352.1 383 48.8
MCO05G310 Micromonas commoda HOM05D004078 ORTHO05D004823 1.7e-92 344.0 399 44.4
CAN.G637.1 Capsicum annuum HOM05D004078 ORTHO05D004823 7.3e-88 328.6 405 44.7
TAR627G0085 Trochodendron aralioides HOM05D004078 ORTHO05D004823 2.8e-87 326.6 377 43.5
PRCOL_00001954 Prasinoderma coloniale HOM05D004078 ORTHO05D004823 4.4e-85 319.3 377 45.6
Nn7g37243 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.6e-82 310.8 277 59.9
PGSC0003DMG400031047 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.5e-80 304.3 419 42.5
GSVIVG01015447001 Vitis vinifera HOM05D004078 ORTHO05D004823 2.5e-80 303.5 406 43.8
Cre16.g683371 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 4.3e-80 302.8 379 44.6
CDE02G0789 Ceratophyllum demersum HOM05D004078 ORTHO05D004823 2.1e-79 300.4 298 53.0
Cre03.g159500 Chlamydomonas reinhardtii HOM05D004078 ORTHO05D004823 1.4e-78 297.7 360 45.0
Cfa026818 Carpinus fangiana HOM05D004078 ORTHO05D004823 6.4e-68 262.3 416 37.5
Sopen03g029010 Solanum pennellii HOM05D004078 ORTHO05D004823 1.2e-66 258.1 235 55.3
COL.COLO4_24641 Corchorus olitorius HOM05D004078 ORTHO05D004823 2.3e-65 253.8 294 48.3
Prupe.8G047700 Prunus persica HOM05D004078 ORTHO05D004823 1.7e-60 237.7 285 43.9
Os02g0482400 Oryza sativa ssp. japonica HOM05D004078 ORTHO05D004823 1.5e-56 224.6 232 52.6
PGSC0003DMG400025628 Solanum tuberosum HOM05D004078 ORTHO05D004823 1.3e-55 221.5 243 50.6
ClCG08G013980 Citrullus lanatus HOM05D004078 ORTHO05D150179 2.8e-55 220.3 362 39.2
CAN.G20.32 Capsicum annuum HOM05D004078 ORTHO05D004823 7.6e-53 212.2 177 57.1
Nn7g37247 Nelumbo nucifera HOM05D004078 ORTHO05D004823 1.3e-47 194.9 173 59.0
GSVIVG01015446001 Vitis vinifera HOM05D004078 ORTHO05D004823 4.8e-47 193.0 177 56.5
RcHm_v2.0_Chr3g0490321 Rosa chinensis HOM05D004078 ORTHO05D004823 7.1e-43 179.1 185 51.4
RcHm_v2.0_Chr3g0490331 Rosa chinensis HOM05D004078 ORTHO05D004823 1.8e-41 174.5 129 63.6
Hma1.2p1_0023F.1_g015870 Hydrangea macrophylla HOM05D004078 ORTHO05D004823 3.7e-39 166.8 206 44.7
Prupe.8G048000 Prunus persica HOM05D004078 ORTHO05D004823 3.1e-38 163.7 137 58.4
PGSC0003DMG400024452 Solanum tuberosum HOM05D004078 ORTHO05D004823 3.4e-37 160.2 309 34.3
GSVIVG01008730001 Vitis vinifera HOM05D004078 ORTHO05D004823 1.2e-34 151.8 304 31.9
AagrBONN_evm.TU.Sc2ySwM_340.327 Anthoceros agrestis HOM05D004078 ORTHO05D004823 6.1e-34 149.4 151 50.3
QL02p013060 Quercus lobata HOM05D004078 ORTHO05D004823 1.5e-32 144.8 129 55.0
RcHm_v2.0_Chr3g0485801 Rosa chinensis HOM05D004078 ORTHO05D004823 4.1e-30 136.7 345 30.7
TPR.G7712 Trifolium pratense HOM05D004078 ORTHO05D004823 1.2e-29 135.2 112 54.5
Sabra02G0012600 Salix brachista HOM05D004078 ORTHO05D004823 8.5e-20 102.4 62 71.0
Aqoxy6G01662 Aquilegia oxysepala HOM05D004078 ORTHO05D004823 2.5e-19 100.9 74 66.2
Cre01.g050100 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D004452 1.3e-15 88.6 382 25.1
AagrBONN_evm.TU.Sc2ySwM_228.2627 Anthoceros agrestis HOM05D003708 ORTHO05D004452 3.8e-12 77.0 348 25.3
Sc08g0000610 Simmondsia chinensis HOM05D003708 ORTHO05D004452 9.4e-11 72.4 372 23.7
Aqoxy3G00171 Aquilegia oxysepala HOM05D003708 ORTHO05D004452 2.1e-10 71.2 397 22.4
FAN12G3541 Fragaria x ananassa HOM05D004078 ORTHO05D004823 8.8e-09 65.9 266 25.2
Cre16.g675900 Chlamydomonas reinhardtii HOM05D003708 ORTHO05D145447 9.1e-06 55.8 112 28.6


User provided reference genes

Program Settings