Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI09_g14014_MAGBIO Magnolia biondii HOM05D006064 ORTHO05D007619 1.5e-81 306.2 165 100.0
CSS0016455 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 6.2e-43 177.9 139 71.2
ATR0693G299 Amborella trichopoda HOM05D006064 ORTHO05D007619 3.1e-42 175.6 154 68.2
CSS0001890 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 4.0e-42 175.3 139 70.5
TAR383G1034 Trochodendron aralioides HOM05D006064 ORTHO05D007619 8.9e-42 174.1 156 64.7
Haze_16361 Corylus avellana HOM05D006064 ORTHO05D007619 1.2e-41 173.7 150 67.3
Cc04_g03040 Coffea canephora HOM05D006064 ORTHO05D007619 4.4e-41 171.8 140 70.0
Hma1.2p1_1195F.1_g265790 Hydrangea macrophylla HOM05D006064 ORTHO05D007619 1.7e-40 169.9 162 64.2
Hma1.2p1_3147F.1_g333156 Hydrangea macrophylla HOM05D006064 ORTHO05D007619 1.7e-40 169.9 162 64.2
Cfa002095 Carpinus fangiana HOM05D006064 ORTHO05D007619 3.8e-40 168.7 150 66.0
GSVIVG01017072001 Vitis vinifera HOM05D006064 ORTHO05D007619 3.8e-40 168.7 146 67.8
TAR626G0023 Trochodendron aralioides HOM05D006064 ORTHO05D007619 1.4e-39 166.8 156 64.1
Dinv38021 Davidia involucrata HOM05D006064 ORTHO05D007619 2.4e-39 166.0 159 62.3
Ah.01g005550 Amaranthus hybridus HOM05D006064 ORTHO05D007619 3.2e-39 165.6 164 62.2
Thecc.06G092400 Theobroma cacao HOM05D006064 ORTHO05D007619 5.4e-39 164.9 139 68.3
Duzib235G0379 Durio zibethinus HOM05D006064 ORTHO05D007619 7.1e-39 164.5 137 68.6
PGSC0003DMG400002547 Solanum tuberosum HOM05D006064 ORTHO05D007619 9.2e-39 164.1 139 66.9
CiPaw.02G148800 Carya illinoinensis HOM05D006064 ORTHO05D007619 1.2e-38 163.7 143 66.4
Nn2g11694 Nelumbo nucifera HOM05D006064 ORTHO05D007619 1.6e-38 163.3 97 82.5
Gohir.D05G131300 Gossypium hirsutum HOM05D006064 ORTHO05D007619 2.1e-38 162.9 141 68.1
Gorai.009G135000 Gossypium raimondii HOM05D006064 ORTHO05D007619 2.1e-38 162.9 141 68.1
Sed0002776 Sechium edule HOM05D006064 ORTHO05D007619 2.1e-38 162.9 149 65.1
Manes.04G130000 Manihot esculenta HOM05D006064 ORTHO05D007619 2.7e-38 162.5 151 64.2
Solyc03g120630.4 Solanum lycopersicum HOM05D006064 ORTHO05D007619 3.5e-38 162.2 142 66.2
CANSAT56G1509 Cannabis sativa HOM05D006064 ORTHO05D007619 6.0e-38 161.4 155 64.5
Gohir.A05G131800 Gossypium hirsutum HOM05D006064 ORTHO05D007619 6.0e-38 161.4 144 66.0
THA.LOC104800422 Tarenaya hassleriana HOM05D006064 ORTHO05D007619 1.3e-37 160.2 149 65.1
Cpa.g.sc98.5 Carica papaya HOM05D006064 ORTHO05D007619 2.3e-37 159.5 139 66.9
Duzib160G0510 Durio zibethinus HOM05D006064 ORTHO05D007619 2.3e-37 159.5 139 66.9
Carub.0002s2765 Capsella rubella HOM05D006064 ORTHO05D007619 3.0e-37 159.1 133 69.2
QL05p021654 Quercus lobata HOM05D006064 ORTHO05D007619 3.0e-37 159.1 139 66.9
Gorai.011G074400 Gossypium raimondii HOM05D006064 ORTHO05D007619 5.1e-37 158.3 137 67.2
ClCG09G001940 Citrullus lanatus HOM05D006064 ORTHO05D007619 6.6e-37 157.9 172 59.3
AT1G79850 Arabidopsis thaliana HOM05D006064 ORTHO05D007619 1.1e-36 157.1 133 69.2
CARHR074660 Cardamine hirsuta HOM05D006064 ORTHO05D007619 1.1e-36 157.1 134 69.4
Thhalv10019289m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 1.1e-36 157.1 137 67.9
CDE04G2099 Ceratophyllum demersum HOM05D006064 ORTHO05D007619 1.5e-36 156.8 159 61.6
MELO3C024255.2 Cucumis melo HOM05D006064 ORTHO05D007619 1.5e-36 156.8 166 62.7
Thhalv10001197m.g Eutrema salsugineum HOM05D006064 ORTHO05D007619 1.9e-36 156.4 140 66.4
RcHm_v2.0_Chr2g0138941 Rosa chinensis HOM05D006064 ORTHO05D007619 1.9e-36 156.4 160 60.0
Gohir.D10G070100 Gossypium hirsutum HOM05D006064 ORTHO05D007619 2.5e-36 156.0 137 66.4
CsaV3_7G033420 Cucumis sativus L. HOM05D006064 ORTHO05D007619 3.3e-36 155.6 165 61.8
Glyma.13G357200 Glycine max HOM05D006064 ORTHO05D007619 3.3e-36 155.6 143 65.0
Actinidia21680 Actinidia chinensis HOM05D006064 ORTHO05D007619 4.3e-36 155.2 153 60.8
Ah.01g021630 Amaranthus hybridus HOM05D006064 ORTHO05D007619 4.3e-36 155.2 165 61.2
AL2G41710 Arabidopsis lyrata HOM05D006064 ORTHO05D007619 4.3e-36 155.2 133 68.4
Glyma.15G016400 Glycine max HOM05D006064 ORTHO05D007619 4.3e-36 155.2 141 63.8
Sc12g0009460 Simmondsia chinensis HOM05D006064 ORTHO05D007619 9.6e-36 154.1 135 65.9
arahy.Tifrunner.gnm1.ann1.MEX591 Arachis hypogaea HOM05D006064 ORTHO05D007619 1.2e-35 153.7 135 66.7
Lalb_Chr22g0351371 Lupinus albus HOM05D006064 ORTHO05D007619 1.2e-35 153.7 136 68.4
Ciclev10026679m.g Citrus clementina HOM05D006064 ORTHO05D007619 1.6e-35 153.3 150 62.7
BcaC04g21589 Brassica carinata HOM05D006064 ORTHO05D007619 2.1e-35 152.9 142 64.8
CSS0048088 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 2.1e-35 152.9 98 77.6
BcaB07g30746 Brassica carinata HOM05D006064 ORTHO05D007619 2.8e-35 152.5 145 63.4
PSO782G0135 Papaver somniferum HOM05D006064 ORTHO05D007619 3.6e-35 152.1 129 65.9
Aqoxy7G01608 Aquilegia oxysepala HOM05D006064 ORTHO05D007619 6.2e-35 151.4 161 58.4
BolC9t55875H Brassica oleracea HOM05D006064 ORTHO05D007619 6.2e-35 151.4 142 64.1
PGR102G3343 Punica granatum HOM05D006064 ORTHO05D007619 6.2e-35 151.4 155 60.6
C09p30110 Brassica napus HOM05D006064 ORTHO05D007619 8.1e-35 151.0 142 64.1
CAN.G438.28 Capsicum annuum HOM05D006064 ORTHO05D007619 8.1e-35 151.0 153 57.5
PSO566G0311 Papaver somniferum HOM05D006064 ORTHO05D007619 8.1e-35 151.0 137 62.0
Potri.001G184000 Populus trichocarpa HOM05D006064 ORTHO05D007619 8.1e-35 151.0 166 58.4
FvH4_6g31770 Fragaria vesca HOM05D006064 ORTHO05D007619 1.8e-34 149.8 158 58.9
FAN02G0676 Fragaria x ananassa HOM05D006064 ORTHO05D007619 1.8e-34 149.8 155 61.3
A09p23360 Brassica napus HOM05D006064 ORTHO05D007619 2.4e-34 149.4 139 64.7
BraA09t37937Z Brassica rapa HOM05D006064 ORTHO05D007619 2.4e-34 149.4 139 64.7
TWI12G0791 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 3.1e-34 149.1 140 63.6
Aa31LG4G130 Aethionema arabicum HOM05D006064 ORTHO05D007619 4.0e-34 148.7 136 66.2
A09p23350 Brassica napus HOM05D006064 ORTHO05D007619 4.0e-34 148.7 142 62.7
BraA09t37936Z Brassica rapa HOM05D006064 ORTHO05D007619 4.0e-34 148.7 142 62.7
Nitab4.5_0007217g0010 Nicotiana tabacum HOM05D006064 ORTHO05D007619 5.2e-34 148.3 101 75.2
Prupe.3G067300 Prunus persica HOM05D006064 ORTHO05D007619 5.2e-34 148.3 131 64.1
C09p30100 Brassica napus HOM05D006064 ORTHO05D007619 6.9e-34 147.9 141 61.7
FAN09G1878 Fragaria x ananassa HOM05D006064 ORTHO05D007619 6.9e-34 147.9 155 61.3
BcaC04g21590 Brassica carinata HOM05D006064 ORTHO05D007619 8.9e-34 147.5 141 62.4
BolC9t55874H Brassica oleracea HOM05D006064 ORTHO05D007619 8.9e-34 147.5 141 62.4
Sp2g12850 Schrenkiella parvula HOM05D006064 ORTHO05D007619 8.9e-34 147.5 139 64.0
TWI75G0440 Tripterygium wilfordii HOM05D006064 ORTHO05D007619 8.9e-34 147.5 140 63.6
EL10Ac9g22030 Beta vulgaris HOM05D006064 ORTHO05D007619 1.2e-33 147.1 100 77.0
Eucgr.F03039 Eucalyptus grandis HOM05D006064 ORTHO05D007619 1.2e-33 147.1 142 61.3
FAN14G0180 Fragaria x ananassa HOM05D006064 ORTHO05D007619 1.2e-33 147.1 158 58.2
AUR62011660 Chenopodium quinoa HOM05D006064 ORTHO05D007619 1.5e-33 146.7 164 58.5
AUR62016483 Chenopodium quinoa HOM05D006064 ORTHO05D007619 1.5e-33 146.7 165 57.6
FAN05G4262 Fragaria x ananassa HOM05D006064 ORTHO05D007619 1.5e-33 146.7 161 60.2
COL.COLO4_30435 Corchorus olitorius HOM05D006064 ORTHO05D007619 2.0e-33 146.4 100 76.0
Sabra01G0155400 Salix brachista HOM05D006064 ORTHO05D007619 2.0e-33 146.4 158 58.9
HanXRQChr12g0360791 Helianthus annuus HOM05D006064 ORTHO05D007619 2.6e-33 146.0 139 59.0
Medtr2g101770 Medicago truncatula HOM05D006064 ORTHO05D007619 3.4e-33 145.6 136 62.5
unitig_46.g18557 Utricularia gibba HOM05D006064 ORTHO05D007619 7.6e-33 144.4 136 62.5
DCAR_016211 Daucus carota HOM05D006064 ORTHO05D007619 9.9e-33 144.1 98 76.5
SGA_v2.0_scaffold69G23360 Striga asiatica HOM05D006064 ORTHO05D007619 9.9e-33 144.1 155 58.1
MSTRG.11053 Avicennia marina HOM05D006064 ORTHO05D007619 1.7e-32 143.3 154 56.5
MD17G1191100 Malus domestica HOM05D006064 ORTHO05D007619 2.2e-32 142.9 139 62.6
Gohir.A10G081300 Gossypium hirsutum HOM05D006064 ORTHO05D007619 2.9e-32 142.5 98 74.5
Nitab4.5_0001315g0190 Nicotiana tabacum HOM05D006064 ORTHO05D007619 3.8e-32 142.1 98 75.5
Ca_01132_v3 Cicer arietinum L. HOM05D006064 ORTHO05D007619 6.4e-32 141.4 140 60.0
Lj5C58T14 Lonicera japonica HOM05D006064 ORTHO05D007619 6.4e-32 141.4 103 70.9
Lj3g0008796 Lotus japonicus HOM05D006064 ORTHO05D007619 6.4e-32 141.4 137 60.6
unitig_37.g12253 Utricularia gibba HOM05D000346 ORTHO05D000326 6.4e-32 141.4 161 58.4
CSS0034695 Camellia sinensis var. sinensis HOM05D006064 ORTHO05D007619 1.9e-31 139.8 98 75.5
Phvul.005G168800 Phaseolus vulgaris HOM05D006064 ORTHO05D007619 1.9e-31 139.8 137 59.9
Lsat_1_v5_gn_5_130940 Lactuca sativa HOM05D006064 ORTHO05D007619 2.4e-31 139.4 141 54.6
Oeu033507.1 Olea europaea HOM05D006064 ORTHO05D007619 3.2e-31 139.0 155 55.5
SalBow2G0408 Salvia bowleyana HOM05D006064 ORTHO05D007619 7.1e-31 137.9 101 72.3
Migut.I00941 Erythranthe guttata HOM05D006064 ORTHO05D007619 9.3e-31 137.5 126 65.1
SGA_v2.0_scaffold5G02555 Striga asiatica HOM05D006064 ORTHO05D007619 1.6e-30 136.7 152 56.6
Nn3g18074 Nelumbo nucifera HOM05D006064 ORTHO05D007619 1.0e-29 134.0 100 70.0
Rhsim08G0223400 Rhododendron simsii HOM05D006064 ORTHO05D007619 2.5e-28 129.4 104 67.3
VMungo1080G0744 Vigna mungo HOM05D006064 ORTHO05D007619 2.5e-28 129.4 136 58.1
TPR.G37258 Trifolium pratense HOM05D006064 ORTHO05D007619 1.3e-27 127.1 141 56.7
vmacro18887 Vaccinium macrocarpon HOM05D006064 ORTHO05D007619 1.4e-26 123.6 97 70.1
AagrBONN_evm.TU.Sc2ySwM_344.4090 Anthoceros agrestis HOM05D006064 ORTHO05D007619 4.0e-26 122.1 140 50.7
SEGI_37104 Sequoiadendron giganteum HOM05D006064 ORTHO05D007619 5.3e-26 121.7 131 58.0
Os04g0691600 Oryza sativa ssp. japonica HOM05D006064 ORTHO05D007619 6.9e-26 121.3 106 63.2
AagrBONN_evm.TU.Sc2ySwM_344.4095 Anthoceros agrestis HOM05D006064 ORTHO05D007619 1.2e-25 120.6 140 50.0
Zm00001eb367450 Zea mays HOM05D006064 ORTHO05D007619 2.6e-25 119.4 132 55.3
Pp3c11_14630 Physcomitrium patens HOM05D006064 ORTHO05D007619 4.2e-23 112.1 78 65.4
Pp3c1_12860 Physcomitrium patens HOM05D006064 ORTHO05D007619 1.2e-22 110.5 109 51.4
Zm00001eb434460 Zea mays HOM05D006064 ORTHO05D007619 1.2e-22 110.5 128 53.1
Actinidia32730 Actinidia chinensis HOM05D006064 ORTHO05D007619 2.5e-20 102.8 98 57.1
MD09G1209400 Malus domestica HOM05D006064 ORTHO05D007619 1.1e-18 97.4 88 65.9
SMO358G0237 Selaginella moellendorffii HOM05D006064 ORTHO05D007619 6.9e-18 94.7 93 52.7
Mapoly0027s0119 Marchantia polymorpha HOM05D006064 ORTHO05D007619 3.4e-17 92.4 147 43.5
CBR_g33913 Chara braunii HOM05D006064 ORTHO05D007619 5.8e-17 91.7 112 45.5
Peaxi162Scf00015g00005 Petunia axillaris HOM05D006064 ORTHO05D007619 5.8e-17 91.7 60 78.3
Actinidia13476 Actinidia chinensis HOM05D006064 ORTHO05D007619 1.1e-15 87.4 63 66.7
Haze_02816 Corylus avellana HOM05D002629 ORTHO05D003221 9.6e-12 74.3 61 62.3
Actinidia35657 Actinidia chinensis HOM05D006064 ORTHO05D007619 1.6e-11 73.6 98 43.9
SalBow1G4549 Salvia bowleyana HOM05D006064 ORTHO05D007619 1.2e-09 67.4 74 52.7
Cre02.g118950 Chlamydomonas reinhardtii HOM05D004588 ORTHO05D005365 1.0e-08 64.3 93 38.7
Migut.J00858 Erythranthe guttata HOM05D004588 ORTHO05D005365 1.1e-07 60.8 101 37.6
Atru.chr8.1086 Acer truncatum HOM05D004588 ORTHO05D005365 2.5e-07 59.7 74 43.2
MSTRG.19411 Avicennia marina HOM05D004588 ORTHO05D005365 2.5e-07 59.7 103 37.9
Mapoly0128s0026 Marchantia polymorpha HOM05D004588 ORTHO05D005365 2.5e-07 59.7 89 40.4
arahy.Tifrunner.gnm1.ann1.HQTU6U Arachis hypogaea HOM05D004588 ORTHO05D005365 4.2e-07 58.9 100 33.0
Pp3c1_39230 Physcomitrium patens HOM05D004588 ORTHO05D005365 5.5e-07 58.5 77 39.0
MCO03G166 Micromonas commoda HOM05D006064 ORTHO05D007619 7.1e-07 58.2 104 34.6
arahy.Tifrunner.gnm1.ann1.7K7KM4 Arachis hypogaea HOM05D004588 ORTHO05D005365 9.3e-07 57.8 97 34.0
ClCG07G006010 Citrullus lanatus HOM05D004588 ORTHO05D005365 9.3e-07 57.8 74 43.2
MELO3C026421.2 Cucumis melo HOM05D004588 ORTHO05D005365 9.3e-07 57.8 74 43.2
CBR_g18728 Chara braunii HOM05D004588 ORTHO05D005365 1.2e-06 57.4 77 41.6
CsaV3_4G009740 Cucumis sativus L. HOM05D004588 ORTHO05D005365 1.2e-06 57.4 74 43.2
arahy.Tifrunner.gnm1.ann1.7DYL36 Arachis hypogaea HOM05D004588 ORTHO05D005365 1.6e-06 57.0 101 33.7
Cc06_g23660 Coffea canephora HOM05D004588 ORTHO05D005365 2.1e-06 56.6 84 39.3
Lsat_1_v5_gn_4_185681 Lactuca sativa HOM05D004588 ORTHO05D005365 2.1e-06 56.6 94 39.4
AagrBONN_evm.TU.Sc2ySwM_362.494 Anthoceros agrestis HOM05D004588 ORTHO05D005365 2.7e-06 56.2 77 37.7
Aqoxy7G03968 Aquilegia oxysepala HOM05D004588 ORTHO05D005365 2.7e-06 56.2 85 37.6
CDE04G0148 Ceratophyllum demersum HOM05D004588 ORTHO05D005365 2.7e-06 56.2 74 41.9
Psat0s11495g0040 Pisum sativum HOM05D004588 ORTHO05D005365 2.7e-06 56.2 87 37.9
Lj4g0014219 Lotus japonicus HOM05D004588 ORTHO05D005365 3.5e-06 55.8 96 37.5
Nitab4.5_0004827g0050 Nicotiana tabacum HOM05D004588 ORTHO05D005365 3.5e-06 55.8 77 41.6
Oeu008630.1 Olea europaea HOM05D004588 ORTHO05D005365 3.5e-06 55.8 74 41.9
Potri.006G080200 Populus trichocarpa HOM05D004588 ORTHO05D005365 3.5e-06 55.8 74 41.9
Sabra06G0060700 Salix brachista HOM05D004588 ORTHO05D005365 3.5e-06 55.8 74 41.9
Sed0013564 Sechium edule HOM05D004588 ORTHO05D005365 3.5e-06 55.8 97 36.1
Ciclev10006280m.g Citrus clementina HOM05D004588 ORTHO05D005365 4.6e-06 55.5 92 39.1
Lalb_Chr02g0150391 Lupinus albus HOM05D004588 ORTHO05D005365 4.6e-06 55.5 87 37.9
Phvul.008G093100 Phaseolus vulgaris HOM05D004588 ORTHO05D005365 4.6e-06 55.5 74 41.9
Thecc.02G231300 Theobroma cacao HOM05D004588 ORTHO05D005365 4.6e-06 55.5 74 43.2
ATR0626G376 Amborella trichopoda HOM05D004588 ORTHO05D005365 6.0e-06 55.1 74 41.9
FAN04G2743 Fragaria x ananassa HOM05D004588 ORTHO05D005365 6.0e-06 55.1 99 33.3
FAN05G0480 Fragaria x ananassa HOM05D004588 ORTHO05D005365 6.0e-06 55.1 99 33.3
FAN09G1784 Fragaria x ananassa HOM05D004588 ORTHO05D005365 6.0e-06 55.1 99 33.3
Glyma.07G155900 Glycine max HOM05D004588 ORTHO05D005365 6.0e-06 55.1 92 35.9
HanXRQChr06g0184041 Helianthus annuus HOM05D004588 ORTHO05D005365 6.0e-06 55.1 74 41.9
Lalb_Chr06g0169291 Lupinus albus HOM05D004588 ORTHO05D005365 6.0e-06 55.1 87 37.9
MD03G1139600 Malus domestica HOM05D004588 ORTHO05D005365 6.0e-06 55.1 89 39.3
TWI53G1560 Tripterygium wilfordii HOM05D004588 ORTHO05D005365 6.0e-06 55.1 70 42.9
Medtr6g005030 Medicago truncatula HOM05D004588 ORTHO05D005365 7.9e-06 54.7 76 38.2
QL11p006982 Quercus lobata HOM05D004588 ORTHO05D005365 7.9e-06 54.7 89 37.1
SMO230G0073 Selaginella moellendorffii HOM05D004588 ORTHO05D005365 7.9e-06 54.7 77 40.3
THA.LOC104800355 Tarenaya hassleriana HOM05D004588 ORTHO05D005365 7.9e-06 54.7 91 38.5
vmacro20736 Vaccinium macrocarpon HOM05D004588 ORTHO05D005365 7.9e-06 54.7 74 40.5
HPP92_001963 Vanilla planifolia HOM05D004588 ORTHO05D005365 7.9e-06 54.7 92 38.0


User provided reference genes

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