Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI08_g36673_MAGBIO Magnolia biondii HOM05D004506 ORTHO05D005894 4.9e-37 157.1 72 100.0
MBI08_g36669_MAGBIO Magnolia biondii HOM05D004506 ORTHO05D000022 1.8e-31 138.7 72 90.3
MBI08_g40515_MAGBIO Magnolia biondii HOM05D004506 ORTHO05D005894 6.9e-31 136.7 72 88.9
Thecc.03G151800 Theobroma cacao HOM05D004506 ORTHO05D005894 4.9e-29 130.6 70 82.9
MBI04_g09533_MAGBIO Magnolia biondii HOM05D004506 ORTHO05D005894 6.5e-29 130.2 64 90.6
Medtr3g008020 Medicago truncatula HOM05D004506 ORTHO05D005894 6.5e-29 130.2 70 81.4
TPR.G12273 Trifolium pratense HOM05D004506 ORTHO05D005894 6.5e-29 130.2 70 81.4
FvH4_7g11000 Fragaria vesca HOM05D004506 ORTHO05D005894 1.1e-28 129.4 70 80.0
FAN03G0108 Fragaria x ananassa HOM05D004506 ORTHO05D005894 1.1e-28 129.4 70 80.0
FAN06G3057 Fragaria x ananassa HOM05D004506 ORTHO05D005894 1.1e-28 129.4 70 80.0
FAN06G3781 Fragaria x ananassa HOM05D004506 ORTHO05D005894 1.1e-28 129.4 70 80.0
FAN10G0788 Fragaria x ananassa HOM05D004506 ORTHO05D005894 1.1e-28 129.4 70 80.0
FAN10G1665 Fragaria x ananassa HOM05D004506 ORTHO05D005894 1.1e-28 129.4 70 80.0
QL09p019769 Quercus lobata HOM05D004506 ORTHO05D005894 1.1e-28 129.4 70 78.6
RcHm_v2.0_Chr1g0348931 Rosa chinensis HOM05D004506 ORTHO05D005894 1.1e-28 129.4 70 80.0
Lalb_Chr15g0079621 Lupinus albus HOM05D004506 ORTHO05D005894 1.4e-28 129.0 70 80.0
Ca_14044_v3 Cicer arietinum L. HOM05D004506 ORTHO05D005894 1.9e-28 128.6 70 80.0
Eucgr.K00176 Eucalyptus grandis HOM05D004506 ORTHO05D005894 1.9e-28 128.6 70 80.0
Lj8A45T71 Lonicera japonica HOM05D004506 ORTHO05D005894 1.9e-28 128.6 70 81.4
Lj3g0001820 Lotus japonicus HOM05D004506 ORTHO05D005894 1.9e-28 128.6 70 77.1
Prupe.2G274800 Prunus persica HOM05D004506 ORTHO05D005894 1.9e-28 128.6 70 80.0
Dinv16855 Davidia involucrata HOM05D004506 ORTHO05D005894 2.5e-28 128.3 70 78.6
Gohir.A03G059500 Gossypium hirsutum HOM05D004506 ORTHO05D005894 2.5e-28 128.3 70 80.0
Phvul.005G010500 Phaseolus vulgaris HOM05D004506 ORTHO05D005894 2.5e-28 128.3 70 80.0
FAN01G3128 Fragaria x ananassa HOM05D004506 ORTHO05D005894 3.2e-28 127.9 70 78.6
Glyma.04G130900 Glycine max HOM05D004506 ORTHO05D005894 3.2e-28 127.9 70 78.6
Lj4g0017120 Lotus japonicus HOM05D004506 ORTHO05D005894 3.2e-28 127.9 70 77.1
Manes.06G102500 Manihot esculenta HOM05D004506 ORTHO05D005894 5.5e-28 127.1 70 77.1
TAR375G0145 Trochodendron aralioides HOM05D004506 ORTHO05D005894 5.5e-28 127.1 70 77.1
GSVIVG01017497001 Vitis vinifera HOM05D004506 ORTHO05D005894 5.5e-28 127.1 70 78.6
Aqoxy7G00808 Aquilegia oxysepala HOM05D004506 ORTHO05D005894 7.1e-28 126.7 70 77.1
Cfa008176 Carpinus fangiana HOM05D004506 ORTHO05D005894 7.1e-28 126.7 70 77.1
CiPaw.03G093800 Carya illinoinensis HOM05D004506 ORTHO05D005894 7.1e-28 126.7 70 77.1
Glyma.06G316900 Glycine max HOM05D004506 ORTHO05D005894 7.1e-28 126.7 70 77.1
Potri.001G126700 Populus trichocarpa HOM05D004506 ORTHO05D005894 7.1e-28 126.7 70 78.6
arahy.Tifrunner.gnm1.ann1.95MHTD Arachis hypogaea HOM05D004506 ORTHO05D005894 9.3e-28 126.3 71 74.6
Cpa.g.sc13.280 Carica papaya HOM05D004506 ORTHO05D005894 9.3e-28 126.3 71 74.6
Duzib084G1159 Durio zibethinus HOM05D004506 ORTHO05D005894 9.3e-28 126.3 70 78.6
Gohir.D03G106400 Gossypium hirsutum HOM05D004506 ORTHO05D005894 9.3e-28 126.3 70 78.6
Gorai.003G112900 Gossypium raimondii HOM05D004506 ORTHO05D005894 9.3e-28 126.3 70 78.6
Lj3g0005902 Lotus japonicus HOM05D004506 ORTHO05D005894 9.3e-28 126.3 70 77.1
Lj4g0011722 Lotus japonicus HOM05D004506 ORTHO05D005894 1.2e-27 125.9 70 75.7
arahy.Tifrunner.gnm1.ann1.IFX0ZR Arachis hypogaea HOM05D004506 ORTHO05D005894 1.6e-27 125.6 70 75.7
Sabra01G0097700 Salix brachista HOM05D004506 ORTHO05D005894 1.6e-27 125.6 70 78.6
COL.COLO4_14080 Corchorus olitorius HOM05D004506 ORTHO05D005894 2.1e-27 125.2 70 78.6
PSO170G4268 Papaver somniferum HOM05D004506 ORTHO05D005894 2.7e-27 124.8 70 78.6
AUR62012431 Chenopodium quinoa HOM05D004506 ORTHO05D005894 3.5e-27 124.4 71 77.5
MD15G1302100 Malus domestica HOM05D004506 ORTHO05D005894 3.5e-27 124.4 70 74.3
PSO017G3180 Papaver somniferum HOM05D004506 ORTHO05D005894 3.5e-27 124.4 70 77.1
Psat5g229120 Pisum sativum HOM05D004506 ORTHO05D005894 4.6e-27 124.0 70 77.1
Actinidia13592 Actinidia chinensis HOM05D004506 ORTHO05D005894 6.0e-27 123.6 70 78.6
Aa31LG11G5470 Aethionema arabicum HOM05D004506 ORTHO05D005894 6.0e-27 123.6 70 77.1
Ciclev10004861m.g Citrus clementina HOM05D004506 ORTHO05D005894 6.0e-27 123.6 70 75.7
DCAR_020180 Daucus carota HOM05D004506 ORTHO05D005894 6.0e-27 123.6 70 77.1
QL09p019790 Quercus lobata HOM05D004506 ORTHO05D005894 6.0e-27 123.6 70 72.9
Lsat_1_v5_gn_5_9361 Lactuca sativa HOM05D004506 ORTHO05D005894 7.9e-27 123.2 70 75.7
Oeu042536.1 Olea europaea HOM05D004506 ORTHO05D005894 7.9e-27 123.2 70 78.6
Psat4g224080 Pisum sativum HOM05D004506 ORTHO05D005894 7.9e-27 123.2 70 74.3
SGA_v2.0_scaffold2G01228 Striga asiatica HOM05D004506 ORTHO05D005894 7.9e-27 123.2 70 77.1
HanXRQChr15g0485901 Helianthus annuus HOM05D004506 ORTHO05D005894 1.0e-26 122.9 70 75.7
TWI77G0110 Tripterygium wilfordii HOM05D004506 ORTHO05D005894 1.0e-26 122.9 70 75.7
CARHR208670 Cardamine hirsuta HOM05D004506 ORTHO05D005894 1.3e-26 122.5 70 75.7
Thhalv10013434m.g Eutrema salsugineum HOM05D004506 ORTHO05D005894 1.3e-26 122.5 70 75.7
Sp6g38160 Schrenkiella parvula HOM05D004506 ORTHO05D005894 1.3e-26 122.5 70 77.1
BcaC06g32172 Brassica carinata HOM05D004506 ORTHO05D005894 1.8e-26 122.1 70 75.7
A10p31480 Brassica napus HOM05D004506 ORTHO05D005894 1.8e-26 122.1 70 75.7
C09p72170 Brassica napus HOM05D004506 ORTHO05D005894 1.8e-26 122.1 70 75.7
BolC9t59961H Brassica oleracea HOM05D004506 ORTHO05D005894 1.8e-26 122.1 70 75.7
BraA10t45194Z Brassica rapa HOM05D004506 ORTHO05D005894 1.8e-26 122.1 70 75.7
Nn6g33875 Nelumbo nucifera HOM05D004506 ORTHO05D005894 1.8e-26 122.1 70 74.3
PGR042G2434 Punica granatum HOM05D004506 ORTHO05D005894 1.8e-26 122.1 70 72.9
QL09p019805 Quercus lobata HOM05D004506 ORTHO05D005894 1.8e-26 122.1 70 74.3
CDE11G0103 Ceratophyllum demersum HOM05D004506 ORTHO05D005894 2.3e-26 121.7 70 75.7
Migut.F00501 Erythranthe guttata HOM05D004506 ORTHO05D005894 2.3e-26 121.7 70 77.1
Peaxi162Scf00271g00832 Petunia axillaris HOM05D004506 ORTHO05D005894 2.3e-26 121.7 70 75.7
ECA232G0243 Erigeron canadensis HOM05D004506 ORTHO05D005894 3.0e-26 121.3 70 74.3
CSS0039072 Camellia sinensis var. sinensis HOM05D004506 ORTHO05D005894 3.9e-26 120.9 67 77.6
Cc02_g04480 Coffea canephora HOM05D004506 ORTHO05D005894 3.9e-26 120.9 70 75.7
ClCG01G001110 Citrullus lanatus HOM05D004506 ORTHO05D005894 5.1e-26 120.6 70 77.1
MELO3C005823.2 Cucumis melo HOM05D004506 ORTHO05D005894 5.1e-26 120.6 70 77.1
CsaV3_5G001240 Cucumis sativus L. HOM05D004506 ORTHO05D005894 5.1e-26 120.6 70 77.1
Nitab4.5_0000448g0050 Nicotiana tabacum HOM05D004506 ORTHO05D005894 5.1e-26 120.6 70 74.3
unitig_748.g7052 Utricularia gibba HOM05D004506 ORTHO05D005894 5.1e-26 120.6 70 74.3
AT5G04620 Arabidopsis thaliana HOM05D004506 ORTHO05D005894 6.7e-26 120.2 70 74.3
Rhsim03G0164500 Rhododendron simsii HOM05D004506 ORTHO05D005894 6.7e-26 120.2 70 74.3
Carub.0006s0354 Capsella rubella HOM05D004506 ORTHO05D005894 8.7e-26 119.8 70 72.9
Nitab4.5_0000262g0080 Nicotiana tabacum HOM05D004506 ORTHO05D005894 8.7e-26 119.8 70 74.3
Nitab4.5_0001267g0080 Nicotiana tabacum HOM05D004506 ORTHO05D005894 8.7e-26 119.8 70 74.3
Nitab4.5_0001358g0050 Nicotiana tabacum HOM05D004506 ORTHO05D005894 8.7e-26 119.8 70 74.3
Prupe.5G016200 Prunus persica HOM05D004506 ORTHO05D005894 8.7e-26 119.8 70 74.3
Atru.chr1.848 Acer truncatum HOM05D004506 ORTHO05D005894 1.1e-25 119.4 70 75.7
Duzib205G1320 Durio zibethinus HOM05D004506 ORTHO05D005894 1.1e-25 119.4 70 77.1
SEGI_23386 Sequoiadendron giganteum HOM05D004506 ORTHO05D005894 1.1e-25 119.4 68 76.5
Sc09g0010310 Simmondsia chinensis HOM05D004506 ORTHO05D005894 1.1e-25 119.4 70 72.9
AL6G14250 Arabidopsis lyrata HOM05D004506 ORTHO05D005894 1.5e-25 119.0 70 74.3
Sed0002724 Sechium edule HOM05D004506 ORTHO05D005894 1.9e-25 118.6 70 75.7
ATR0057G043 Amborella trichopoda HOM05D004506 ORTHO05D005894 2.5e-25 118.2 70 74.3
Peaxi162Scf00304g01360 Petunia axillaris HOM05D004506 ORTHO05D005894 2.5e-25 118.2 70 74.3
EL10Ac2g04175 Beta vulgaris HOM05D004506 ORTHO05D005894 4.3e-25 117.5 70 74.3
Thecc.03G151900 Theobroma cacao HOM05D004506 ORTHO05D005894 2.1e-24 115.2 70 72.9
HPP92_025562 Vanilla planifolia HOM05D004506 ORTHO05D005894 2.1e-24 115.2 70 70.0
Thecc.03G152000 Theobroma cacao HOM05D004506 ORTHO05D005894 3.7e-24 114.4 70 72.9
CAN.G330.6 Capsicum annuum HOM05D004506 ORTHO05D005894 8.2e-24 113.2 70 70.0
AUR62031554 Chenopodium quinoa HOM05D004506 ORTHO05D005894 8.2e-24 113.2 71 73.2
Os10g0560900 Oryza sativa ssp. japonica HOM05D004506 ORTHO05D005894 1.1e-23 112.8 70 70.0
Solyc06g034150.4 Solanum lycopersicum HOM05D004506 ORTHO05D005894 1.1e-23 112.8 70 70.0
Sopen06g010810 Solanum pennellii HOM05D004506 ORTHO05D005894 1.1e-23 112.8 70 70.0
PGSC0003DMG400021582 Solanum tuberosum HOM05D004506 ORTHO05D005894 2.4e-23 111.7 70 70.0
COL.COLO4_14083 Corchorus olitorius HOM05D004506 ORTHO05D005894 5.3e-23 110.5 70 71.4
COL.COLO4_15394 Corchorus olitorius HOM05D004506 ORTHO05D005894 5.3e-23 110.5 70 70.0
Zm00001eb434390 Zea mays HOM05D004506 ORTHO05D005894 9.0e-23 109.8 70 67.1
COL.COLO4_14084 Corchorus olitorius HOM05D004506 ORTHO05D005894 2.6e-22 108.2 68 72.1
Mapoly0011s0111 Marchantia polymorpha HOM05D004506 ORTHO05D005894 2.6e-22 108.2 68 70.6
COL.COLO4_14082 Corchorus olitorius HOM05D004506 ORTHO05D005894 3.4e-22 107.8 70 65.7
EL10Ac7g17596 Beta vulgaris HOM05D004506 ORTHO05D005894 7.6e-22 106.7 65 72.3
Cpa.g.sc13.277 Carica papaya HOM05D004506 ORTHO05D005894 1.6e-19 99.0 70 61.4
SMO116G0299 Selaginella moellendorffii HOM05D004506 ORTHO05D005894 2.1e-19 98.6 68 64.7
AagrBONN_evm.TU.Sc2ySwM_117.115 Anthoceros agrestis HOM05D004506 ORTHO05D005894 2.7e-19 98.2 68 66.2
Ah.16g104730 Amaranthus hybridus HOM05D004506 ORTHO05D005894 1.8e-18 95.5 61 73.8
Pp3c12_22290 Physcomitrium patens HOM05D004506 ORTHO05D005894 2.3e-18 95.1 68 64.7
Rhsim03G0164600 Rhododendron simsii HOM05D004506 ORTHO05D005894 1.9e-17 92.0 61 67.2
vmacro06819 Vaccinium macrocarpon HOM05D004506 ORTHO05D005894 2.8e-16 88.2 48 75.0
Cre17.g733650 Chlamydomonas reinhardtii HOM05D004506 ORTHO05D005894 1.7e-13 79.0 70 51.4
Migut.F00496 Erythranthe guttata HOM05D004506 ORTHO05D005894 7.2e-12 73.6 50 64.0
MCO13G220 Micromonas commoda HOM05D004506 ORTHO05D005894 2.8e-08 61.6 101 34.7
Psat0ss1306g0080 Pisum sativum HOM05D004506 ORTHO05D006785 8.2e-08 60.1 32 75.0
PRCOL_00004803 Prasinoderma coloniale HOM05D003078 ORTHO05D005894 3.1e-07 58.2 68 45.6
Lsat_1_v5_gn_8_62240 Lactuca sativa HOM05D003051 ORTHO05D003932 3.4e-06 54.7 66 36.4


User provided reference genes

Program Settings