Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 4.4e-83 311.2 154 100.0
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 4.4e-83 311.2 154 100.0
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 5.8e-19 98.2 99 55.6
RcHm_v2.0_Chr2g0151491 Rosa chinensis HOM05D006973 ORTHO05D008636 3.8e-18 95.5 151 46.4
FAN02G1229 Fragaria x ananassa HOM05D006973 ORTHO05D008636 4.9e-18 95.1 68 70.6
FvH4_6g38230 Fragaria vesca HOM05D006973 ORTHO05D008636 8.4e-18 94.4 66 71.2
FAN14G5571 Fragaria x ananassa HOM05D006973 ORTHO05D008636 8.4e-18 94.4 66 71.2
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 8.4e-18 94.4 67 67.2
FAN09G4519 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.9e-17 93.2 66 69.7
QL08p044096 Quercus lobata HOM05D006973 ORTHO05D008636 4.2e-17 92.0 98 53.1
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 5.4e-17 91.7 132 43.2
Haze_13497 Corylus avellana HOM05D006973 ORTHO05D008636 7.1e-17 91.3 64 70.3
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 1.2e-16 90.5 143 38.5
ClCG09G022400 Citrullus lanatus HOM05D006973 ORTHO05D008636 1.6e-16 90.1 66 66.7
VMungo0647G1950 Vigna mungo HOM05D006973 ORTHO05D008636 2.1e-16 89.7 154 40.9
Potri.005G201500 Populus trichocarpa HOM05D006973 ORTHO05D008636 3.5e-16 89.0 159 39.6
MELO3C014471.2 Cucumis melo HOM05D006973 ORTHO05D008636 4.6e-16 88.6 66 65.2
CsaV3_6G038070 Cucumis sativus L. HOM05D006973 ORTHO05D008636 4.6e-16 88.6 66 65.2
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 4.6e-16 88.6 147 42.9
MBI10_g03529_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 4.6e-16 88.6 97 47.4
Nn6g34359 Nelumbo nucifera HOM05D006973 ORTHO05D008636 4.6e-16 88.6 121 43.8
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 6.0e-16 88.2 116 44.8
Glyma.02G286900 Glycine max HOM05D006973 ORTHO05D008636 7.9e-16 87.8 108 49.1
Cfa021245 Carpinus fangiana HOM05D006973 ORTHO05D008636 1.0e-15 87.4 101 53.5
Prupe.3G172700 Prunus persica HOM05D006973 ORTHO05D008636 1.0e-15 87.4 100 53.0
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 1.3e-15 87.0 66 69.7
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 3.0e-15 85.9 66 66.7
Phvul.008G191400 Phaseolus vulgaris HOM05D006973 ORTHO05D008636 3.0e-15 85.9 161 39.8
Actinidia32515 Actinidia chinensis HOM05D006973 ORTHO05D008636 5.1e-15 85.1 138 42.0
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 5.1e-15 85.1 65 61.5
Glyma.14G028000 Glycine max HOM05D006973 ORTHO05D008636 8.7e-15 84.3 61 68.9
Oeu040038.1 Olea europaea HOM05D006973 ORTHO05D008636 8.7e-15 84.3 88 54.5
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 8.7e-15 84.3 65 61.5
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 1.1e-14 84.0 64 70.3
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 1.1e-14 84.0 61 67.2
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 1.1e-14 84.0 64 64.1
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 1.1e-14 84.0 61 68.9
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 1.5e-14 83.6 65 60.0
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.5e-14 83.6 64 67.2
PGR042G1786 Punica granatum HOM05D006973 ORTHO05D008636 1.9e-14 83.2 60 68.3
Manes.02G084300 Manihot esculenta HOM05D006973 ORTHO05D008636 2.5e-14 82.8 101 50.5
Medtr5g091690 Medicago truncatula HOM05D006973 ORTHO05D008636 3.3e-14 82.4 66 62.1
Sed0009997 Sechium edule HOM05D006973 ORTHO05D008636 3.3e-14 82.4 68 60.3
MSTRG.14293 Avicennia marina HOM05D006973 ORTHO05D008636 5.6e-14 81.6 77 55.8
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 5.6e-14 81.6 149 36.9
Oeu020059.1 Olea europaea HOM05D006973 ORTHO05D008636 5.6e-14 81.6 116 44.8
Rhsim06G0116300 Rhododendron simsii HOM05D006973 ORTHO05D008636 5.6e-14 81.6 93 51.6
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 7.3e-14 81.3 147 39.5
Aqoxy4G00147 Aquilegia oxysepala HOM05D006973 ORTHO05D008636 9.6e-14 80.9 71 57.7
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 9.6e-14 80.9 61 67.2
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 9.6e-14 80.9 61 68.9
Sp5g04010 Schrenkiella parvula HOM05D006973 ORTHO05D008636 1.3e-13 80.5 72 55.6
TPR.G12665 Trifolium pratense HOM05D006973 ORTHO05D008636 1.3e-13 80.5 61 63.9
LjContig00310g0018130 Lotus japonicus HOM05D006973 ORTHO05D008636 2.1e-13 79.7 61 65.6
Sopen07g029740 Solanum pennellii HOM05D006973 ORTHO05D008636 2.1e-13 79.7 61 65.6
Thhalv10006323m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 2.8e-13 79.3 72 55.6
Lalb_Chr17g0348291 Lupinus albus HOM05D006973 ORTHO05D008636 3.6e-13 79.0 61 63.9
CANSAT64G0305 Cannabis sativa HOM05D006973 ORTHO05D008636 1.4e-12 77.0 55 65.5
Atru.chr6.2093 Acer truncatum HOM05D006973 ORTHO05D008636 2.4e-12 76.3 61 59.0
BcaB02g08235 Brassica carinata HOM05D006973 ORTHO05D008636 2.4e-12 76.3 87 49.4
BcaC02g10032 Brassica carinata HOM05D006973 ORTHO05D008636 4.0e-12 75.5 60 60.0
A04p02340 Brassica napus HOM05D006973 ORTHO05D008636 4.0e-12 75.5 127 37.0
BolC4t24939H Brassica oleracea HOM05D006973 ORTHO05D008636 4.0e-12 75.5 60 60.0
Carub.0005s2563 Capsella rubella HOM05D006973 ORTHO05D008636 5.3e-12 75.1 62 61.3
C04p33710 Brassica napus HOM05D006973 ORTHO05D008636 9.0e-12 74.3 139 36.0
BraA04t15963Z Brassica rapa HOM05D006973 ORTHO05D008636 9.0e-12 74.3 60 58.3
Lalb_Chr10g0106711 Lupinus albus HOM05D006973 ORTHO05D008636 9.0e-12 74.3 61 57.4
AT3G58850 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 1.5e-11 73.6 62 59.7
Aa31LG1G24640 Aethionema arabicum HOM05D006973 ORTHO05D008636 2.6e-11 72.8 80 46.2
BcaC02g07217 Brassica carinata HOM05D006973 ORTHO05D008636 3.4e-11 72.4 66 51.5
A04p32440 Brassica napus HOM05D006973 ORTHO05D008636 3.4e-11 72.4 66 51.5
C04p69950 Brassica napus HOM05D006973 ORTHO05D008636 3.4e-11 72.4 66 51.5
BolC4t28495H Brassica oleracea HOM05D006973 ORTHO05D008636 3.4e-11 72.4 66 51.5
BraA04t18696Z Brassica rapa HOM05D006973 ORTHO05D008636 3.4e-11 72.4 66 51.5
CARHR169260 Cardamine hirsuta HOM05D006973 ORTHO05D008636 3.4e-11 72.4 62 56.5
Cc05_g09430 Coffea canephora HOM05D006973 ORTHO05D008636 3.4e-11 72.4 54 68.5
AL5G40650 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 4.5e-11 72.0 62 58.1
A03p23820 Brassica napus HOM05D006973 ORTHO05D008636 5.8e-11 71.6 66 51.5
BraA03t11597Z Brassica rapa HOM05D006973 ORTHO05D008636 5.8e-11 71.6 66 51.5
DCAR_013315 Daucus carota HOM05D006973 ORTHO05D008636 5.8e-11 71.6 71 56.3
BcaB06g29268 Brassica carinata HOM05D006973 ORTHO05D008636 7.6e-11 71.2 66 51.5
BcaB06g29270 Brassica carinata HOM05D006973 ORTHO05D008636 7.6e-11 71.2 66 51.5
BraA05t19306Z Brassica rapa HOM05D006973 ORTHO05D008636 7.6e-11 71.2 72 51.4
Carub.0004s2531 Capsella rubella HOM05D006973 ORTHO05D008636 1.3e-10 70.5 66 51.5
AT2G42870 Arabidopsis thaliana HOM05D006973 ORTHO05D008636 2.2e-10 69.7 61 54.1
A05p03160 Brassica napus HOM05D006973 ORTHO05D008636 2.2e-10 69.7 72 51.4
Thhalv10017430m.g Eutrema salsugineum HOM05D006973 ORTHO05D008636 2.2e-10 69.7 61 54.1
CSS0041461 Camellia sinensis var. sinensis HOM05D006973 ORTHO05D008636 2.9e-10 69.3 66 53.0
BcaC02g12446 Brassica carinata HOM05D006973 ORTHO05D008636 3.8e-10 68.9 67 47.8
C03p28410 Brassica napus HOM05D006973 ORTHO05D008636 3.8e-10 68.9 61 52.5
C04p03810 Brassica napus HOM05D006973 ORTHO05D008636 3.8e-10 68.9 67 47.8
BolC3t15210H Brassica oleracea HOM05D006973 ORTHO05D008636 3.8e-10 68.9 61 52.5
BolC4t22017H Brassica oleracea HOM05D006973 ORTHO05D008636 3.8e-10 68.9 67 47.8
AL4G41480 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 4.9e-10 68.6 61 52.5
AL713U10010 Arabidopsis lyrata HOM05D006973 ORTHO05D008636 4.9e-10 68.6 61 52.5
BcaB01g03419 Brassica carinata HOM05D006973 ORTHO05D008636 4.9e-10 68.6 59 54.2
Sp4g25000 Schrenkiella parvula HOM05D006973 ORTHO05D008636 6.4e-10 68.2 58 55.2
BcaC07g40229 Brassica carinata HOM05D006973 ORTHO05D008636 1.1e-09 67.4 59 54.2
CDE04G0049 Ceratophyllum demersum HOM05D006973 ORTHO05D008636 2.4e-09 66.2 67 44.8
A09p51360 Brassica napus HOM05D006973 ORTHO05D008636 3.2e-09 65.9 58 55.2
BraA09t40577Z Brassica rapa HOM05D006973 ORTHO05D008636 3.2e-09 65.9 58 55.2
Aa31LG10G13410 Aethionema arabicum HOM05D006973 ORTHO05D008636 5.5e-09 65.1 55 58.2
CARHR137940 Cardamine hirsuta HOM05D006973 ORTHO05D008636 5.5e-09 65.1 65 52.3
arahy.Tifrunner.gnm1.ann1.D7Q1BT Arachis hypogaea HOM05D006973 ORTHO05D008636 7.9e-08 61.2 54 55.6
arahy.Tifrunner.gnm1.ann1.SG1KTY Arachis hypogaea HOM05D006973 ORTHO05D008636 7.9e-08 61.2 54 55.6
arahy.Tifrunner.gnm1.ann1.9T2B0R Arachis hypogaea HOM05D006973 ORTHO05D008636 1.3e-07 60.5 49 61.2
BcaC07g40299 Brassica carinata HOM05D006973 ORTHO05D008636 3.0e-07 59.3 76 44.7
C08p34140 Brassica napus HOM05D006973 ORTHO05D008636 3.0e-07 59.3 76 44.7
BolC8t51013H Brassica oleracea HOM05D006973 ORTHO05D008636 3.0e-07 59.3 76 44.7
HPP92_024628 Vanilla planifolia HOM05D006973 ORTHO05D008636 3.0e-07 59.3 61 45.9
MBI19_g03260_MAGBIO Magnolia biondii HOM05D001624 ORTHO05D001530 3.9e-07 58.9 49 53.1
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 6.7e-07 58.2 55 43.6
Aqoxy3G03049 Aquilegia oxysepala HOM05D008443 ORTHO05D010587 8.7e-07 57.8 49 55.1
CiPaw.05G147800 Carya illinoinensis HOM05D008443 ORTHO05D010587 8.7e-07 57.8 49 53.1
Phvul.003G053700 Phaseolus vulgaris HOM05D008443 ORTHO05D010587 8.7e-07 57.8 49 51.0
QL03p061920 Quercus lobata HOM05D008443 ORTHO05D010587 8.7e-07 57.8 45 60.0
VMungo0251G0489 Vigna mungo HOM05D008443 ORTHO05D010587 8.7e-07 57.8 49 51.0
TAR365G0268 Trochodendron aralioides HOM05D006547 ORTHO05D008112 1.1e-06 57.4 64 37.5
Glyma.08G289300 Glycine max HOM05D008443 ORTHO05D010587 1.5e-06 57.0 49 51.0
Gohir.A03G141200 Gossypium hirsutum HOM05D008443 ORTHO05D010587 1.5e-06 57.0 49 51.0
MBI15_g19742_MAGBIO Magnolia biondii HOM05D008443 ORTHO05D010587 1.5e-06 57.0 49 49.0
Manes.01G198240 Manihot esculenta HOM05D008443 ORTHO05D010587 1.5e-06 57.0 49 53.1
Potri.014G118300 Populus trichocarpa HOM05D006547 ORTHO05D008112 1.5e-06 57.0 54 46.3
THA.LOC104803237 Tarenaya hassleriana HOM05D006973 ORTHO05D008636 1.5e-06 57.0 59 49.2
Gorai.005G184100 Gossypium raimondii HOM05D008443 ORTHO05D010587 1.9e-06 56.6 49 51.0
MBI18_g22340_MAGBIO Magnolia biondii HOM05D006547 ORTHO05D008112 1.9e-06 56.6 54 46.3
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 1.9e-06 56.6 54 40.7
Sabra02G0162800 Salix brachista HOM05D006547 ORTHO05D008112 1.9e-06 56.6 55 45.5
Ciclev10022819m.g Citrus clementina HOM05D006547 ORTHO05D008112 2.5e-06 56.2 63 39.7
Duzib268G1406 Durio zibethinus HOM05D008443 ORTHO05D010587 2.5e-06 56.2 58 46.6
SEGI_09603 Sequoiadendron giganteum HOM05D001624 ORTHO05D008636 2.5e-06 56.2 48 56.2
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 3.3e-06 55.8 49 51.0
Rhsim12G0048000 Rhododendron simsii HOM05D008443 ORTHO05D010587 3.3e-06 55.8 45 55.6
Thecc.02G266700 Theobroma cacao HOM05D006547 ORTHO05D008112 4.3e-06 55.5 63 39.7
Zm00001eb159180 Zea mays HOM05D006973 ORTHO05D008636 4.3e-06 55.5 56 46.4
Gohir.D02G164100 Gossypium hirsutum HOM05D008443 ORTHO05D010587 5.6e-06 55.1 45 55.6
Manes.05G088700 Manihot esculenta HOM05D008443 ORTHO05D010587 5.6e-06 55.1 51 49.0
Nn4g25552 Nelumbo nucifera HOM05D006547 ORTHO05D008112 5.6e-06 55.1 45 57.8
Prupe.1G256700 Prunus persica HOM05D008443 ORTHO05D010587 5.6e-06 55.1 59 45.8
CSS0001689 Camellia sinensis var. sinensis HOM05D008443 ORTHO05D010587 7.4e-06 54.7 84 40.5
PGR102G0936 Punica granatum HOM05D008443 ORTHO05D010587 7.4e-06 54.7 48 47.9
Cfa019086 Carpinus fangiana HOM05D008443 ORTHO05D010587 9.6e-06 54.3 75 41.3
CDE10G0216 Ceratophyllum demersum HOM05D001577 ORTHO05D008017 9.6e-06 54.3 58 41.4
Migut.D00065 Erythranthe guttata HOM05D006547 ORTHO05D008112 9.6e-06 54.3 44 45.5
Glyma.18G135000 Glycine max HOM05D008443 ORTHO05D010587 9.6e-06 54.3 49 49.0
Lsat_1_v5_gn_3_47940 Lactuca sativa HOM05D008443 ORTHO05D010587 9.6e-06 54.3 48 50.0
Lalb_Chr03g0036161 Lupinus albus HOM05D006547 ORTHO05D008112 9.6e-06 54.3 63 31.7
Nn3g16936 Nelumbo nucifera HOM05D008443 ORTHO05D010587 9.6e-06 54.3 53 45.3
TPR.G35976 Trifolium pratense HOM05D008443 ORTHO05D010587 9.6e-06 54.3 51 52.9


User provided reference genes

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