Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI07_g12932_MAGBIO Magnolia biondii HOM05D004899 ORTHO05D006580 1.2e-204 716.5 395 100.0
TAR362G0172 Trochodendron aralioides HOM05D004899 ORTHO05D006580 6.4e-171 604.4 395 85.6
Dinv06242 Davidia involucrata HOM05D004899 ORTHO05D006580 7.8e-169 597.4 395 84.6
Nn1g02931 Nelumbo nucifera HOM05D004899 ORTHO05D006580 1.1e-167 593.6 395 84.6
CSS0003371 Camellia sinensis var. sinensis HOM05D004899 ORTHO05D006580 3.1e-165 585.5 395 82.5
CiPaw.08G118600 Carya illinoinensis HOM05D004899 ORTHO05D006580 8.4e-163 577.4 395 80.8
Aqoxy5G00161 Aquilegia oxysepala HOM05D004899 ORTHO05D006580 7.1e-162 574.3 395 82.5
Actinidia34758 Actinidia chinensis HOM05D004899 ORTHO05D006580 2.1e-161 572.8 395 81.5
Prupe.6G350900 Prunus persica HOM05D004899 ORTHO05D006580 1.0e-160 570.5 395 81.5
Eucgr.B02154 Eucalyptus grandis HOM05D004899 ORTHO05D006580 2.3e-160 569.3 395 81.5
PSO674G0057 Papaver somniferum HOM05D004899 ORTHO05D006580 8.7e-160 567.4 395 80.8
GSVIVG01023441001 Vitis vinifera HOM05D004899 ORTHO05D006580 1.9e-159 566.2 395 81.3
Rhsim09G0133700 Rhododendron simsii HOM05D004899 ORTHO05D006580 3.3e-159 565.5 395 79.7
Thecc.05G269900 Theobroma cacao HOM05D004899 ORTHO05D006580 3.3e-159 565.5 395 79.2
Duzib106G1539 Durio zibethinus HOM05D004899 ORTHO05D006580 5.6e-159 564.7 395 78.7
Manes.08G140200 Manihot esculenta HOM05D004899 ORTHO05D006580 3.6e-158 562.0 395 80.8
Potri.013G047800 Populus trichocarpa HOM05D004899 ORTHO05D006580 3.1e-157 558.9 395 77.2
Potri.019G020000 Populus trichocarpa HOM05D004899 ORTHO05D006580 3.1e-157 558.9 399 77.7
CAN.G1465.15 Capsicum annuum HOM05D004899 ORTHO05D006580 4.0e-157 558.5 395 79.7
PGR142G4366 Punica granatum HOM05D004899 ORTHO05D006580 5.3e-157 558.1 395 80.5
MD04G1231200 Malus domestica HOM05D004899 ORTHO05D006580 6.9e-157 557.8 396 79.8
QL03p029772 Quercus lobata HOM05D004899 ORTHO05D006580 2.0e-156 556.2 411 77.6
CANSAT54G0581 Cannabis sativa HOM05D004899 ORTHO05D006580 4.5e-156 555.1 395 79.5
MELO3C008694.2 Cucumis melo HOM05D004899 ORTHO05D006580 5.8e-156 554.7 396 78.5
ClCG11G010490 Citrullus lanatus HOM05D004899 ORTHO05D006580 2.2e-155 552.7 396 78.3
CsaV3_2G009880 Cucumis sativus L. HOM05D004899 ORTHO05D006580 2.2e-155 552.7 396 78.3
Sabra19G0032200 Salix brachista HOM05D004899 ORTHO05D006580 2.9e-155 552.4 395 78.2
TWI36G0265 Tripterygium wilfordii HOM05D004899 ORTHO05D006580 2.9e-155 552.4 393 76.8
PGSC0003DMG400023503 Solanum tuberosum HOM05D004899 ORTHO05D006580 3.8e-155 552.0 395 78.7
RcHm_v2.0_Chr3g0449481 Rosa chinensis HOM05D004899 ORTHO05D006580 4.9e-155 551.6 395 78.2
FvH4_6g01740 Fragaria vesca HOM05D004899 ORTHO05D006580 8.4e-155 550.8 395 78.0
Peaxi162Scf00015g02911 Petunia axillaris HOM05D004899 ORTHO05D006580 1.1e-154 550.4 395 78.0
FAN14G2287 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.4e-154 550.1 395 78.0
FAN14G4075 Fragaria x ananassa HOM05D004899 ORTHO05D006580 1.4e-154 550.1 395 78.0
Solyc05g054950.2 Solanum lycopersicum HOM05D004899 ORTHO05D006580 2.4e-154 549.3 395 78.5
MSTRG.8229 Avicennia marina HOM05D004899 ORTHO05D006580 1.2e-153 547.0 395 78.2
FAN05G0331 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.1e-153 546.2 395 77.2
FAN05G3121 Fragaria x ananassa HOM05D004899 ORTHO05D006580 2.1e-153 546.2 395 77.2
Gohir.A11G246300 Gossypium hirsutum HOM05D004899 ORTHO05D006580 2.1e-153 546.2 395 76.5
Cc02_g08720 Coffea canephora HOM05D004899 ORTHO05D006580 2.7e-153 545.8 405 77.3
Migut.F01538 Erythranthe guttata HOM05D004899 ORTHO05D006580 2.7e-153 545.8 395 78.5
Sopen05g033410 Solanum pennellii HOM05D004899 ORTHO05D006580 2.7e-153 545.8 395 78.2
FAN09G4068 Fragaria x ananassa HOM05D004899 ORTHO05D006580 4.6e-153 545.0 395 77.5
Gohir.D11G256500 Gossypium hirsutum HOM05D004899 ORTHO05D006580 4.6e-153 545.0 395 76.2
Zm00001eb046420 Zea mays HOM05D004899 ORTHO05D006580 6.0e-153 544.7 395 76.7
Gorai.007G274800 Gossypium raimondii HOM05D004899 ORTHO05D006580 7.9e-153 544.3 395 76.2
Os10g0467200 Oryza sativa ssp. japonica HOM05D004899 ORTHO05D006580 2.3e-152 542.7 395 76.5
Lj2A44T81 Lonicera japonica HOM05D004899 ORTHO05D006580 1.6e-150 536.6 439 72.0
HanXRQChr08g0216941 Helianthus annuus HOM05D004899 ORTHO05D006580 2.8e-150 535.8 395 74.2
SalBow6G5574 Salvia bowleyana HOM05D004899 ORTHO05D006580 2.8e-150 535.8 418 74.2
Hund22166 Selenicereus undatus HOM05D004899 ORTHO05D006580 4.8e-150 535.0 396 73.5
Sc20g0000690 Simmondsia chinensis HOM05D004899 ORTHO05D006580 8.1e-150 534.3 395 74.9
Lsat_1_v5_gn_8_25181 Lactuca sativa HOM05D004899 ORTHO05D006580 2.6e-148 529.3 396 73.7
THA.LOC104820770 Tarenaya hassleriana HOM05D004899 ORTHO05D006580 7.6e-148 527.7 396 69.4
ECA233G1223 Erigeron canadensis HOM05D004899 ORTHO05D006580 1.3e-147 526.9 397 71.3
Sed0011238 Sechium edule HOM05D004899 ORTHO05D006580 1.3e-147 526.9 399 75.7
ATR0736G049 Amborella trichopoda HOM05D004899 ORTHO05D006580 6.4e-147 524.6 395 74.7
SGA_v2.0_scaffold426G51496 Striga asiatica HOM05D004899 ORTHO05D006580 1.9e-146 523.1 397 76.1
EL10Ac4g08990 Beta vulgaris HOM05D004899 ORTHO05D006580 2.4e-146 522.7 398 71.1
AL3G14410 Arabidopsis lyrata HOM05D004899 ORTHO05D006580 3.2e-146 522.3 396 69.2
COL.COLO4_15501 Corchorus olitorius HOM05D004899 ORTHO05D006580 4.2e-146 521.9 379 76.8
arahy.Tifrunner.gnm1.ann1.VXFY9N Arachis hypogaea HOM05D004899 ORTHO05D006580 1.2e-145 520.4 401 76.1
Carub.0003s0362 Capsella rubella HOM05D004899 ORTHO05D006580 1.2e-145 520.4 396 68.9
arahy.Tifrunner.gnm1.ann1.A8VMLZ Arachis hypogaea HOM05D004899 ORTHO05D006580 1.6e-145 520.0 401 76.1
Sp3g03310 Schrenkiella parvula HOM05D004899 ORTHO05D006580 1.6e-145 520.0 396 68.7
Glyma.19G247700 Glycine max HOM05D004899 ORTHO05D006580 2.7e-145 519.2 395 75.9
VMungo0540G0495 Vigna mungo HOM05D004899 ORTHO05D006580 1.3e-144 516.9 397 74.8
AT3G04460 Arabidopsis thaliana HOM05D004899 ORTHO05D006580 2.3e-144 516.2 396 68.4
Glyma.03G250100 Glycine max HOM05D004899 ORTHO05D006580 3.0e-144 515.8 396 75.0
Atru.chr2.1001 Acer truncatum HOM05D004899 ORTHO05D006580 5.1e-144 515.0 374 78.9
Phvul.006G104800 Phaseolus vulgaris HOM05D004899 ORTHO05D006580 5.1e-144 515.0 395 73.9
AUR62040914 Chenopodium quinoa HOM05D004899 ORTHO05D006580 1.1e-143 513.8 395 67.3
Thhalv10020878m.g Eutrema salsugineum HOM05D004899 ORTHO05D006580 1.1e-143 513.8 396 67.7
CDE05G2618 Ceratophyllum demersum HOM05D004899 ORTHO05D006580 5.6e-143 511.5 399 74.2
Ciclev10024089m.g Citrus clementina HOM05D004899 ORTHO05D006580 5.6e-143 511.5 371 79.0
Aa31LG5G14890 Aethionema arabicum HOM05D004899 ORTHO05D006580 1.3e-142 510.4 396 69.9
DCAR_023087 Daucus carota HOM05D004899 ORTHO05D006580 2.6e-140 502.7 395 74.7
BolC3t16350H Brassica oleracea HOM05D004899 ORTHO05D006580 1.3e-139 500.4 395 66.6
A03p33610 Brassica napus HOM05D004899 ORTHO05D006580 2.2e-139 499.6 395 66.1
A05p43040 Brassica napus HOM05D004899 ORTHO05D006580 3.8e-139 498.8 398 64.1
Lj1g0026343 Lotus japonicus HOM05D004899 ORTHO05D006580 3.8e-139 498.8 411 71.8
BcaC01g04376 Brassica carinata HOM05D004899 ORTHO05D006580 8.4e-139 497.7 395 66.1
C03p40810 Brassica napus HOM05D004899 ORTHO05D006580 8.4e-139 497.7 395 66.1
Nitab4.5_0003965g0030 Nicotiana tabacum HOM05D004899 ORTHO05D006580 3.2e-138 495.7 395 73.7
BraA03t12536Z Brassica rapa HOM05D004899 ORTHO05D006580 7.1e-138 494.6 400 65.5
Ca_11390_v3 Cicer arietinum L. HOM05D004899 ORTHO05D006580 1.6e-137 493.4 395 73.4
Lalb_Chr04g0253351 Lupinus albus HOM05D004899 ORTHO05D006580 3.0e-136 489.2 404 70.5
TPR.G10414 Trifolium pratense HOM05D004899 ORTHO05D006580 2.6e-132 476.1 395 70.6
BcaB04g19333 Brassica carinata HOM05D004899 ORTHO05D006580 4.5e-132 475.3 379 66.0
vmacro10377 Vaccinium macrocarpon HOM05D004899 ORTHO05D006580 4.5e-132 475.3 427 66.7
unitig_899.g15065 Utricularia gibba HOM05D004899 ORTHO05D006580 2.9e-131 472.6 387 71.6
AUR62004828 Chenopodium quinoa HOM05D004899 ORTHO05D006580 4.8e-126 455.3 359 69.4
BcaC05g30197 Brassica carinata HOM05D004899 ORTHO05D006580 2.4e-125 453.0 408 61.5
Nitab4.5_0000914g0090 Nicotiana tabacum HOM05D004899 ORTHO05D006580 4.5e-124 448.7 395 69.9
BcaC05g29943 Brassica carinata HOM05D004899 ORTHO05D006580 3.8e-123 445.7 398 60.8
Medtr1g116380 Medicago truncatula HOM05D004899 ORTHO05D006580 1.1e-117 427.6 373 68.6
Ah.06g191810 Amaranthus hybridus HOM05D004899 ORTHO05D006580 2.4e-109 399.8 395 55.2
HPP92_008536 Vanilla planifolia HOM05D004899 ORTHO05D006580 9.4e-106 387.9 287 78.0
C05p62800 Brassica napus HOM05D004899 ORTHO05D006580 1.2e-103 380.9 383 56.1
Psat0s1997g0040 Pisum sativum HOM05D004899 ORTHO05D006580 3.3e-103 379.4 347 68.0
SMO367G0182 Selaginella moellendorffii HOM05D004899 ORTHO05D006580 4.1e-101 372.5 397 53.7
Pp3c17_6400 Physcomitrium patens HOM05D004899 ORTHO05D006580 2.7e-97 359.8 399 53.1
Cpa.g.sc306.4 Carica papaya HOM05D004899 ORTHO05D006580 3.4e-95 352.8 395 55.2
AagrBONN_evm.TU.Sc2ySwM_228.2413 Anthoceros agrestis HOM05D004899 ORTHO05D006580 1.3e-94 350.9 397 50.1
Haze_04413 Corylus avellana HOM05D004899 ORTHO05D006580 1.1e-85 321.2 329 64.4
CARHR078590 Cardamine hirsuta HOM05D004899 ORTHO05D006580 4.5e-84 315.8 248 64.9
Mapoly0097s0077 Marchantia polymorpha HOM05D004899 ORTHO05D006580 6.6e-83 312.0 302 56.0
RhsimUnG0045000 Rhododendron simsii HOM05D004899 ORTHO05D006580 2.1e-73 280.4 379 46.4
SHI31416 Sapria himalayana HOM05D004899 ORTHO05D006580 3.2e-69 266.5 388 52.6
MD12G1249500 Malus domestica HOM05D004899 ORTHO05D006580 5.4e-69 265.8 303 52.1
CANSAT80G2333 Cannabis sativa HOM05D004899 ORTHO05D006580 2.4e-61 240.4 183 66.1
CANSAT80G2786 Cannabis sativa HOM05D004899 ORTHO05D006580 5.4e-61 239.2 183 66.1
CBR_g51833 Chara braunii HOM05D004899 ORTHO05D006580 8.1e-57 225.3 540 33.0
Oeu050631.1 Olea europaea HOM05D004899 ORTHO05D006580 3.1e-56 223.4 293 47.4
CARHR078600 Cardamine hirsuta HOM05D004899 ORTHO05D006580 1.8e-48 197.6 153 72.5
Hma1.2p1_1336F.1_g276500 Hydrangea macrophylla HOM05D004899 ORTHO05D006580 3.1e-48 196.8 122 81.1
Cre06.g263602 Chlamydomonas reinhardtii HOM05D004899 ORTHO05D006580 2.2e-46 190.7 417 32.1
TPR.G8890 Trifolium pratense HOM05D001167 ORTHO05D001054 3.8e-46 189.9 165 60.0
MCO09G554 Micromonas commoda HOM05D004899 ORTHO05D006580 8.7e-43 178.7 407 32.7
BolC5t34933H Brassica oleracea HOM05D004899 ORTHO05D006580 1.1e-42 178.3 125 72.8
MD00G1148800 Malus domestica HOM05D004899 ORTHO05D006580 8.1e-41 172.2 206 50.0
PRCOL_00005674 Prasinoderma coloniale HOM05D004899 ORTHO05D006580 9.0e-40 168.7 392 31.1
C07p09790 Brassica napus HOM05D004899 ORTHO05D006580 3.2e-37 160.2 166 51.2
BraA05t23048Z Brassica rapa HOM05D004899 ORTHO05D006580 4.3e-34 149.8 89 80.9
SEGI_08581 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.2e-31 141.7 148 49.3
Oeu040904.1 Olea europaea HOM05D004899 ORTHO05D006580 2.0e-31 141.0 71 88.7
C01p22380 Brassica napus HOM05D004899 ORTHO05D006580 4.5e-31 139.8 118 60.2
Cc06_g01540 Coffea canephora HOM05D004899 ORTHO05D006580 5.5e-29 132.9 125 64.0
Cc05_g01300 Coffea canephora HOM05D004899 ORTHO05D006580 9.3e-29 132.1 88 76.1
MD08G1214200 Malus domestica HOM05D004899 ORTHO05D006580 2.3e-27 127.5 71 88.7
SEGI_05516 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.6e-25 121.3 88 67.0
BolC6t38557H Brassica oleracea HOM05D004899 ORTHO05D006580 4.8e-25 119.8 133 53.4
BraA04t16133Z Brassica rapa HOM05D004899 ORTHO05D006580 1.2e-23 115.2 102 58.8
BcaC06g35909 Brassica carinata HOM05D004899 ORTHO05D006580 2.6e-23 114.0 151 43.0
Cc06_g14670 Coffea canephora HOM05D004899 ORTHO05D006580 5.8e-23 112.8 130 64.6
Psat3g057720 Pisum sativum HOM05D004899 ORTHO05D006580 1.6e-17 94.7 50 80.0
FAN18G0756 Fragaria x ananassa HOM05D004899 ORTHO05D019122 8.2e-17 92.4 80 62.5
SEGI_06182 Sequoiadendron giganteum HOM05D004899 ORTHO05D006580 1.2e-15 88.6 63 63.5
MBI14_g47597_MAGBIO Magnolia biondii HOM05D000572 ORTHO05D002399 2.9e-14 84.0 50 88.0
BcaC09g50711 Brassica carinata HOM05D004899 ORTHO05D006580 3.8e-14 83.6 102 46.1
SalBow6G6423 Salvia bowleyana HOM05D031023 ORTHO05D019122 6.1e-12 76.3 46 82.6
FvH4_3g30700 Fragaria vesca HOM05D004899 ORTHO05D019122 1.8e-11 74.7 51 72.5
MBI14_g04234_MAGBIO Magnolia biondii HOM05D000572 ORTHO05D002399 7.4e-10 69.3 72 55.6
Cc04_g06470 Coffea canephora HOM05D004899 ORTHO05D034818 1.3e-09 68.6 38 84.2
Psat3g113200 Pisum sativum HOM05D004899 ORTHO05D034818 1.3e-09 68.6 47 61.7
Haze_02280 Corylus avellana HOM05D000013 ORTHO05D000689 2.2e-09 67.8 35 91.4
FvH4_4g13630 Fragaria vesca HOM05D004899 ORTHO05D019122 2.2e-09 67.8 44 75.0


User provided reference genes

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