Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 3.7e-50 201.4 116 100.0
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 7.9e-45 183.7 116 88.8
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 1.0e-44 183.3 116 88.8
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 1.0e-44 183.3 116 88.8
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 1.0e-44 183.3 116 89.7
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 1.4e-44 183.0 116 88.8
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 2.3e-44 182.2 116 87.1
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 3.0e-44 181.8 116 89.7
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 3.0e-44 181.8 116 87.9
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 2.0e-43 179.1 116 86.2
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 2.5e-43 178.7 116 86.2
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 2.5e-43 178.7 116 86.2
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 2.5e-43 178.7 116 86.2
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 3.3e-43 178.3 116 85.3
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 4.3e-43 177.9 116 87.9
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 4.3e-43 177.9 114 88.6
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 9.7e-43 176.8 116 85.3
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 9.7e-43 176.8 119 87.4
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 1.3e-42 176.4 116 85.3
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 1.7e-42 176.0 118 85.6
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 2.2e-42 175.6 116 85.3
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 2.8e-42 175.3 117 86.3
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 2.8e-42 175.3 116 85.3
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 3.7e-42 174.9 114 86.8
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 6.3e-42 174.1 116 83.6
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 6.3e-42 174.1 116 85.3
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 8.2e-42 173.7 116 85.3
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 8.2e-42 173.7 116 84.5
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 8.2e-42 173.7 119 85.7
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 1.1e-41 173.3 116 85.3
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 1.4e-41 172.9 117 83.8
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 1.4e-41 172.9 117 84.6
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 1.4e-41 172.9 117 84.6
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 1.4e-41 172.9 116 83.6
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 1.4e-41 172.9 116 83.6
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 1.8e-41 172.6 117 86.3
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 1.8e-41 172.6 116 82.8
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 3.1e-41 171.8 116 83.6
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 4.1e-41 171.4 116 82.8
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 4.1e-41 171.4 116 82.8
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 9.1e-41 170.2 120 82.5
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 1.5e-40 169.5 120 82.5
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 1.5e-40 169.5 116 80.2
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 1.5e-40 169.5 116 80.2
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 2.0e-40 169.1 117 83.8
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 2.0e-40 169.1 116 81.9
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 2.0e-40 169.1 120 83.3
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 2.6e-40 168.7 137 74.5
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 2.6e-40 168.7 116 84.5
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 4.5e-40 167.9 116 81.0
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 4.5e-40 167.9 116 82.8
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 7.7e-40 167.2 116 83.6
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 1.7e-39 166.0 117 82.1
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 1.7e-39 166.0 116 81.9
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 1.7e-39 166.0 114 81.6
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 2.2e-39 165.6 116 81.0
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 8.5e-39 163.7 112 82.1
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 1.1e-38 163.3 116 78.4
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 1.4e-38 162.9 152 66.4
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 1.4e-38 162.9 114 78.9
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 1.9e-38 162.5 114 79.8
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 2.5e-38 162.2 116 81.0
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 2.5e-38 162.2 116 81.0
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 2.5e-38 162.2 116 77.6
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 3.2e-38 161.8 119 81.5
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 4.2e-38 161.4 120 80.0
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 4.2e-38 161.4 104 85.6
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 5.5e-38 161.0 116 80.2
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 7.2e-38 160.6 119 80.7
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 1.2e-37 159.8 116 80.2
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 1.6e-37 159.5 119 79.8
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 2.1e-37 159.1 103 86.4
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 2.1e-37 159.1 117 82.1
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 2.7e-37 158.7 119 79.8
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 2.7e-37 158.7 119 79.8
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 2.7e-37 158.7 116 79.3
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 3.6e-37 158.3 117 78.6
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 3.6e-37 158.3 112 82.1
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 1.0e-36 156.8 119 79.0
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 1.0e-36 156.8 116 79.3
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 1.4e-36 156.4 116 78.4
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 2.3e-36 155.6 119 78.2
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 2.0e-35 152.5 110 80.0
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 4.4e-35 151.4 116 75.9
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 5.7e-35 151.0 108 80.6
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 9.7e-35 150.2 110 78.2
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 1.3e-34 149.8 116 75.9
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 1.3e-34 149.8 116 77.6
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 2.8e-34 148.7 115 75.7
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 6.3e-34 147.5 108 78.7
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 6.3e-34 147.5 115 73.9
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 6.3e-34 147.5 114 75.4
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 8.2e-34 147.1 108 78.7
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 4.1e-33 144.8 117 76.1
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 7.0e-33 144.1 119 75.6
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 2.0e-32 142.5 89 87.6
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 2.6e-32 142.1 103 79.6
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.7e-31 139.4 119 73.9
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.7e-31 139.4 119 73.9
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 1.7e-31 139.4 114 71.1
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 2.9e-31 138.7 110 71.8
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 5.0e-31 137.9 120 71.7
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 5.0e-31 137.9 114 70.2
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 8.5e-31 137.1 119 72.3
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 1.1e-30 136.7 116 71.6
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 3.2e-30 135.2 117 73.5
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 2.7e-29 132.1 142 60.6
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 4.7e-29 131.3 119 71.4
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 5.2e-28 127.9 80 90.0
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 1.5e-27 126.3 94 74.5
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 1.5e-27 126.3 80 86.2
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 2.0e-27 125.9 82 86.6
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 7.4e-27 124.0 116 63.8
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.3e-26 123.2 116 65.5
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 6.3e-26 120.9 119 66.4
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 6.3e-26 120.9 119 66.4
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 1.1e-25 120.2 83 80.7
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 1.4e-25 119.8 80 80.0
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 1.6e-24 116.3 116 62.9
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 5.9e-24 114.4 81 79.0
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 1.3e-23 113.2 68 89.7
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 1.1e-22 110.2 66 92.4
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 2.5e-22 109.0 70 85.7
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 5.5e-22 107.8 83 74.7
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 1.8e-20 102.8 114 58.8
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 3.0e-20 102.1 121 56.2
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 4.0e-20 101.7 68 83.8
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 1.2e-19 100.1 116 57.8
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 3.4e-19 98.6 73 78.1
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 4.4e-19 98.2 119 51.3
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 4.8e-18 94.7 116 54.3
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 7.0e-17 90.9 123 49.6
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 2.2e-15 85.9 58 79.3
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 2.2e-15 85.9 54 85.2
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 2.9e-15 85.5 54 87.0
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 8.5e-15 84.0 87 52.9
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 4.7e-13 78.2 75 68.0
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 6.8e-12 74.3 48 83.3
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 4.4e-11 71.6 257 30.7
Hund21505 Selenicereus undatus HOM05D005404 ORTHO05D006623 9.8e-11 70.5 113 44.2
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 2.4e-09 65.9 48 77.1
Gohir.A08G088100 Gossypium hirsutum HOM05D005404 ORTHO05D006623 1.2e-08 63.5 48 79.2
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 5.9e-08 61.2 51 70.6
Nn4g23354 Nelumbo nucifera HOM05D005404 ORTHO05D006623 5.0e-07 58.2 39 82.1


User provided reference genes

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