Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 0.0e+00 1332.0 710 100.0
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 4.7e-273 944.5 662 74.3
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 2.0e-263 912.5 662 70.7
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 7.5e-263 910.6 662 71.3
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 4.6e-260 901.4 662 70.5
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 6.6e-259 897.5 674 68.5
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 1.5e-258 896.3 668 69.9
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 2.3e-256 889.0 662 69.8
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 5.2e-256 887.9 662 69.6
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 4.4e-255 884.8 659 68.6
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 1.3e-254 883.2 669 68.8
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 2.2e-254 882.5 663 69.2
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 4.9e-254 881.3 674 68.5
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 8.3e-254 880.6 662 68.7
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 1.4e-253 879.8 662 67.8
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 1.4e-253 879.8 678 68.1
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 2.4e-253 879.0 663 69.2
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 7.0e-253 877.5 671 68.0
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 1.0e-251 873.6 662 67.5
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.7e-251 872.8 662 67.2
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 8.6e-251 870.5 666 67.6
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 1.9e-250 869.4 663 67.7
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 4.7e-249 864.8 669 66.8
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 6.8e-248 860.9 649 67.8
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 8.9e-248 860.5 666 66.7
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 2.0e-247 859.4 674 65.7
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 2.0e-247 859.4 673 65.7
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 3.4e-247 858.6 666 67.4
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 3.4e-247 858.6 667 66.4
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 4.4e-247 858.2 673 65.7
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 4.4e-247 858.2 664 66.9
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 4.9e-246 854.7 673 65.5
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 8.3e-246 854.0 660 67.7
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 1.1e-245 853.6 675 65.5
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 1.1e-245 853.6 674 65.4
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 1.1e-245 853.6 672 65.3
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 9.2e-245 850.5 669 65.8
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 1.2e-244 850.1 659 67.2
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 2.7e-244 849.0 663 67.0
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 3.5e-244 848.6 665 65.6
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 1.0e-243 847.0 659 66.9
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 1.7e-243 846.3 659 67.8
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 2.3e-243 845.9 663 66.4
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 3.9e-243 845.1 675 64.7
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 1.1e-242 843.6 661 65.4
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 1.5e-242 843.2 668 65.4
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 4.3e-242 841.6 659 66.2
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 5.6e-242 841.3 663 65.5
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 5.6e-242 841.3 661 64.8
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 1.6e-241 839.7 658 65.5
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 6.2e-241 837.8 660 65.9
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 8.1e-241 837.4 699 63.5
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 4.0e-240 835.1 669 64.6
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 6.8e-240 834.3 675 64.6
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 1.2e-239 833.6 662 65.3
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 3.4e-239 832.0 659 66.2
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 3.4e-239 832.0 658 65.8
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 1.7e-238 829.7 662 66.2
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 6.4e-238 827.8 658 65.5
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 6.4e-238 827.8 673 64.3
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 6.0e-236 821.2 663 64.6
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 7.8e-236 820.8 664 64.6
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 1.3e-235 820.1 654 65.4
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 3.0e-235 818.9 646 65.2
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 4.3e-234 815.1 620 68.9
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 1.6e-233 813.1 696 62.8
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 6.2e-233 811.2 696 62.6
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 3.1e-232 808.9 663 64.1
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 3.8e-230 802.0 669 62.0
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 2.1e-228 796.2 697 62.1
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 3.5e-228 795.4 662 62.7
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 1.5e-226 790.0 649 63.6
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 6.2e-225 784.6 658 62.2
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.4e-224 783.5 672 61.3
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 3.1e-224 782.3 598 68.2
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 3.4e-223 778.9 645 63.3
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 7.1e-221 771.2 617 65.6
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 2.1e-220 769.6 623 64.8
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 2.1e-220 769.6 732 58.3
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 1.7e-214 750.0 666 61.0
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 2.2e-214 749.6 663 60.5
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 1.1e-213 747.3 601 65.9
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 1.4e-213 746.9 662 61.0
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 7.9e-212 741.1 600 65.0
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 9.0e-208 727.6 685 58.5
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 2.9e-206 722.6 689 56.5
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 5.1e-203 711.8 867 47.5
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 7.4e-202 708.0 587 62.9
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 7.2e-197 691.4 667 57.0
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 1.9e-194 683.3 657 57.8
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 3.4e-191 672.5 861 47.2
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 2.9e-182 642.9 669 52.8
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 1.3e-177 627.5 566 58.7
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 1.2e-172 610.9 468 67.1
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 1.5e-170 604.0 521 60.7
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 2.8e-169 599.7 603 55.7
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 9.1e-168 594.7 482 65.4
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 1.2e-167 594.3 496 63.7
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 3.0e-155 553.1 436 65.4
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 1.2e-127 461.5 414 59.4
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.6e-116 424.5 345 63.2
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 9.6e-109 398.7 467 49.0
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 1.6e-79 301.6 396 44.4
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 3.0e-78 297.4 433 41.6
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 8.8e-78 295.8 233 63.1
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.5e-74 285.0 205 71.7
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 4.5e-74 283.5 201 71.1
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 3.0e-70 270.8 181 74.6
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.3e-62 244.6 170 71.8
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 3.7e-60 237.3 283 50.9
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 4.8e-60 236.9 344 42.7
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 4.0e-54 217.2 250 53.6
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 2.8e-44 184.5 168 60.7
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 2.0e-42 178.3 427 34.4
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 4.9e-36 157.1 139 61.2
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 9.2e-35 152.9 141 56.0
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 1.3e-33 149.1 92 78.3
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 4.0e-30 137.5 79 84.8
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.6e-29 134.8 124 58.1
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 7.5e-29 133.3 82 75.6
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 1.3e-28 132.5 138 54.3
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 1.6e-26 125.6 172 43.0
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 1.7e-25 122.1 83 72.3
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 5.0e-25 120.6 387 29.7
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 1.1e-24 119.4 84 69.0
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 7.3e-24 116.7 165 41.8
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 1.8e-22 112.1 79 68.4
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 1.2e-21 109.4 91 60.4
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 2.6e-21 108.2 82 67.1
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 5.8e-21 107.1 157 42.0
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 1.7e-20 105.5 78 66.7
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 2.2e-20 105.1 65 80.0
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 6.4e-20 103.6 90 61.1
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 5.4e-19 100.5 176 36.9
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 2.7e-18 98.2 65 78.5
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 1.2e-15 89.4 50 84.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 1.2e-15 89.4 50 84.0
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 8.9e-14 83.2 50 80.0
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 5.8e-13 80.5 54 66.7
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 9.9e-13 79.7 61 65.6
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 7.8e-10 70.1 57 66.7
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 5.6e-08 63.9 62 45.2
Glyma.16G121250 Glycine max HOM05D001598 ORTHO05D046738 2.4e-06 58.5 47 68.1
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 3.1e-06 58.2 67 47.8


User provided reference genes

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