Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI07_g01996_MAGBIO Magnolia biondii HOM05D005415 ORTHO05D006242 5.0e-289 997.7 688 100.0
TAR629G2415 Trochodendron aralioides HOM05D005415 ORTHO05D006242 7.0e-142 508.8 681 46.3
Dinv11193 Davidia involucrata HOM05D005415 ORTHO05D006242 9.8e-136 488.4 682 44.0
GSVIVG01008582001 Vitis vinifera HOM05D005415 ORTHO05D006242 5.5e-131 472.6 685 45.7
Thecc.03G133700 Theobroma cacao HOM05D005415 ORTHO05D006242 1.2e-128 464.9 685 43.4
Duzib068G0666 Durio zibethinus HOM05D005415 ORTHO05D006242 1.4e-126 458.0 689 42.5
Aqoxy3G01618 Aquilegia oxysepala HOM05D005415 ORTHO05D006242 1.8e-126 457.6 765 40.3
Atru.chr6.1849 Acer truncatum HOM05D005415 ORTHO05D006242 2.0e-125 454.1 691 42.1
Eucgr.B00088 Eucalyptus grandis HOM05D005415 ORTHO05D006242 2.9e-124 450.3 681 41.4
COL.COLO4_16633 Corchorus olitorius HOM05D005415 ORTHO05D006242 5.0e-124 449.5 685 41.5
Gorai.001G056700 Gossypium raimondii HOM05D005415 ORTHO05D006242 6.1e-122 442.6 681 42.3
CiPaw.13G052100 Carya illinoinensis HOM05D005415 ORTHO05D006242 1.0e-121 441.8 683 41.0
Gohir.D07G053600 Gossypium hirsutum HOM05D005415 ORTHO05D006242 6.8e-121 439.1 681 42.1
Phvul.002G284900 Phaseolus vulgaris HOM05D005415 ORTHO05D006242 8.9e-121 438.7 692 40.6
Sc10g0010570 Simmondsia chinensis HOM05D005415 ORTHO05D006242 2.6e-120 437.2 689 44.8
MSTRG.22895 Avicennia marina HOM05D005415 ORTHO05D006242 3.4e-120 436.8 675 41.2
Sed0003726 Sechium edule HOM05D005415 ORTHO05D006242 5.8e-120 436.0 685 41.0
Potri.015G100200 Populus trichocarpa HOM05D005415 ORTHO05D006242 7.5e-120 435.6 723 39.7
QL10p002178 Quercus lobata HOM05D005415 ORTHO05D006242 1.3e-119 434.9 676 41.3
Actinidia18334 Actinidia chinensis HOM05D005415 ORTHO05D006242 1.7e-119 434.5 685 47.9
VMungo0251G3541 Vigna mungo HOM05D005415 ORTHO05D006242 3.5e-117 426.8 690 47.0
Sabra15G0120800 Salix brachista HOM05D005415 ORTHO05D006242 6.6e-116 422.5 725 39.4
Lj9C481T20 Lonicera japonica HOM05D005415 ORTHO05D006242 1.9e-115 421.0 689 41.2
Ciclev10031056m.g Citrus clementina HOM05D005415 ORTHO05D006242 2.5e-115 420.6 689 40.6
ATR0582G259 Amborella trichopoda HOM05D005415 ORTHO05D006242 4.3e-115 419.9 769 57.1
Lj4g0026231 Lotus japonicus HOM05D005415 ORTHO05D006242 4.3e-115 419.9 703 41.4
CsaV3_1G000400 Cucumis sativus L. HOM05D005415 ORTHO05D006242 9.5e-115 418.7 688 40.6
PSO017G0412 Papaver somniferum HOM05D005415 ORTHO05D006242 9.5e-115 418.7 688 59.3
PGR083G0902 Punica granatum HOM05D005415 ORTHO05D006242 1.2e-114 418.3 685 41.0
MELO3C026191.2 Cucumis melo HOM05D005415 ORTHO05D006242 3.6e-114 416.8 686 40.1
PSO478G2612 Papaver somniferum HOM05D005415 ORTHO05D006242 5.2e-113 412.9 691 59.2
Migut.I00557 Erythranthe guttata HOM05D005415 ORTHO05D006242 4.4e-112 409.8 696 38.9
Sopen12g001850 Solanum pennellii HOM05D005415 ORTHO05D006242 5.8e-112 409.5 690 40.3
PGSC0003DMG400013896 Solanum tuberosum HOM05D005415 ORTHO05D006242 7.5e-112 409.1 693 40.0
vmacro19135 Vaccinium macrocarpon HOM05D005415 ORTHO05D006242 2.9e-111 407.1 783 37.2
Cc10_g14800 Coffea canephora HOM05D005415 ORTHO05D006242 4.9e-111 406.4 674 40.5
Solyc12g005900.3 Solanum lycopersicum HOM05D005415 ORTHO05D006242 4.9e-111 406.4 692 40.3
arahy.Tifrunner.gnm1.ann1.NCF6IW Arachis hypogaea HOM05D005415 ORTHO05D006242 8.3e-111 405.6 701 41.8
Glyma.08G010700 Glycine max HOM05D005415 ORTHO05D006242 1.9e-110 404.4 686 47.1
Nitab4.5_0001213g0090 Nicotiana tabacum HOM05D005415 ORTHO05D006242 9.2e-110 402.1 696 44.4
SalBow5G0795 Salvia bowleyana HOM05D005415 ORTHO05D006242 1.2e-109 401.7 689 41.5
HPP92_021709 Vanilla planifolia HOM05D005415 ORTHO05D006242 1.6e-109 401.4 701 38.5
Rhsim08G0192500 Rhododendron simsii HOM05D005415 ORTHO05D006242 2.7e-109 400.6 751 38.1
Ca_17566_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 4.6e-109 399.8 687 39.4
Ca_29727_v3 Cicer arietinum L. HOM05D005415 ORTHO05D006242 4.6e-109 399.8 687 39.4
Peaxi162Scf00047g00185 Petunia axillaris HOM05D005415 ORTHO05D006242 7.8e-109 399.1 732 37.7
Lalb_Chr13g0297171 Lupinus albus HOM05D005415 ORTHO05D006242 1.7e-108 397.9 699 53.1
Lsat_1_v5_gn_4_82521 Lactuca sativa HOM05D005415 ORTHO05D006242 5.1e-108 396.4 683 46.7
Psat7g037120 Pisum sativum HOM05D005415 ORTHO05D006242 1.1e-107 395.2 717 52.9
Cfa018765 Carpinus fangiana HOM05D005415 ORTHO05D006242 5.6e-107 392.9 687 38.7
Hund02456 Selenicereus undatus HOM05D005415 ORTHO05D006242 7.3e-107 392.5 684 42.0
arahy.Tifrunner.gnm1.ann1.MQVT4E Arachis hypogaea HOM05D005415 ORTHO05D006242 2.8e-106 390.6 717 47.4
SGA_v2.0_scaffold414G51200 Striga asiatica HOM05D005415 ORTHO05D006242 2.3e-105 387.5 688 37.9
EL10Ac5g11383 Beta vulgaris HOM05D005415 ORTHO05D006242 3.1e-105 387.1 710 37.5
THA.LOC104798938 Tarenaya hassleriana HOM05D005415 ORTHO05D006242 5.2e-105 386.3 661 38.6
ECA232G0893 Erigeron canadensis HOM05D005415 ORTHO05D006242 1.5e-104 384.8 708 58.8
RcHm_v2.0_Chr7g0189541 Rosa chinensis HOM05D005415 ORTHO05D006242 2.0e-104 384.4 674 41.4
HPP92_021694 Vanilla planifolia HOM05D005415 ORTHO05D006242 4.4e-104 383.3 701 37.5
Medtr8g096570 Medicago truncatula HOM05D005415 ORTHO05D006242 5.8e-104 382.9 716 53.1
ClCG06G018070 Citrullus lanatus HOM05D005415 ORTHO05D006242 1.7e-103 381.3 716 37.6
FAN19G3201 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.2e-103 380.9 701 39.2
HanXRQChr09g0273461 Helianthus annuus HOM05D005415 ORTHO05D006242 2.9e-103 380.6 681 47.0
AUR62043951 Chenopodium quinoa HOM05D005415 ORTHO05D006242 3.7e-103 380.2 687 38.6
AUR62038846 Chenopodium quinoa HOM05D005415 ORTHO05D006242 1.4e-102 378.3 686 39.4
Nitab4.5_0003683g0010 Nicotiana tabacum HOM05D005415 ORTHO05D006242 1.9e-102 377.9 689 43.1
FvH4_1g26610 Fragaria vesca HOM05D005415 ORTHO05D006242 3.2e-102 377.1 715 39.2
FAN26G2295 Fragaria x ananassa HOM05D005415 ORTHO05D006242 3.2e-102 377.1 724 38.8
AUR62029576 Chenopodium quinoa HOM05D005415 ORTHO05D006242 9.2e-102 375.6 695 38.4
CDE05G0217 Ceratophyllum demersum HOM05D005415 ORTHO05D006242 2.1e-101 374.4 630 53.3
Nn4g22247 Nelumbo nucifera HOM05D005415 ORTHO05D006242 1.3e-100 371.7 570 42.6
CANSAT25G2590 Cannabis sativa HOM05D005415 ORTHO05D006242 1.7e-100 371.3 690 41.3
Prupe.5G147700 Prunus persica HOM05D005415 ORTHO05D006242 5.6e-99 366.3 679 40.9
Oeu030666.2 Olea europaea HOM05D005415 ORTHO05D006242 7.3e-99 365.9 883 32.5
Thhalv10003815m.g Eutrema salsugineum HOM05D005415 ORTHO05D006242 2.1e-98 364.4 665 37.3
CARHR277400 Cardamine hirsuta HOM05D005415 ORTHO05D006242 3.6e-98 363.6 664 38.0
AL8G40620 Arabidopsis lyrata HOM05D005415 ORTHO05D006242 4.7e-98 363.2 663 37.6
Carub.0008s2427 Capsella rubella HOM05D005415 ORTHO05D006242 1.4e-97 361.7 684 36.3
Aa31LG1G18400 Aethionema arabicum HOM05D005415 ORTHO05D006242 1.8e-97 361.3 667 37.6
FAN28G1156 Fragaria x ananassa HOM05D005415 ORTHO05D006242 2.2e-95 354.4 704 39.1
unitig_8.g4692 Utricularia gibba HOM05D005415 ORTHO05D006242 2.2e-95 354.4 680 36.0
Cpa.g.sc4.162 Carica papaya HOM05D005415 ORTHO05D006242 2.9e-95 354.0 681 37.2
Haze_07175 Corylus avellana HOM05D005415 ORTHO05D006242 1.4e-94 351.7 657 37.6
MD14G1152700 Malus domestica HOM05D005415 ORTHO05D006242 1.9e-94 351.3 695 35.7
AT5G63540 Arabidopsis thaliana HOM05D005415 ORTHO05D006242 4.2e-94 350.1 679 37.0
Sopen05g009520 Solanum pennellii HOM05D005415 ORTHO05D006242 2.7e-93 347.4 696 36.4
FAN23G0140 Fragaria x ananassa HOM05D005415 ORTHO05D006242 1.0e-92 345.5 658 38.8
Sp2g26630 Schrenkiella parvula HOM05D005415 ORTHO05D006242 3.9e-92 343.6 668 36.7
DCAR_021639 Daucus carota HOM05D005415 ORTHO05D006242 1.1e-91 342.0 699 48.4
Manes.06G122000 Manihot esculenta HOM05D005415 ORTHO05D006242 4.3e-91 340.1 567 40.4
A09p08330 Brassica napus HOM05D005415 ORTHO05D006242 7.3e-91 339.3 661 36.5
BcaB04g19924 Brassica carinata HOM05D005415 ORTHO05D006242 4.8e-90 336.7 661 36.5
BcaC04g23337 Brassica carinata HOM05D005415 ORTHO05D006242 1.1e-89 335.5 661 36.2
C09p09400 Brassica napus HOM05D005415 ORTHO05D006242 1.4e-89 335.1 661 36.2
Zm00001eb085270 Zea mays HOM05D005415 ORTHO05D006242 2.3e-84 317.8 685 33.6
BolC9t53852H Brassica oleracea HOM05D005415 ORTHO05D006242 3.9e-84 317.0 699 34.0
BraA09t36482Z Brassica rapa HOM05D005415 ORTHO05D006242 5.1e-84 316.6 699 34.3
CAN.G2034.2 Capsicum annuum HOM05D005415 ORTHO05D006242 3.8e-79 300.4 552 40.6
Solyc05g014400.4 Solanum lycopersicum HOM05D005415 ORTHO05D006242 3.0e-76 290.8 551 37.4
Actinidia25556 Actinidia chinensis HOM05D005415 ORTHO05D006242 2.5e-75 287.7 265 60.0
CSS0000208 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 4.0e-73 280.4 218 67.0
Ah.11g045540 Amaranthus hybridus HOM05D005415 ORTHO05D006242 7.6e-72 276.2 645 32.7
Gohir.A07G049320 Gossypium hirsutum HOM05D005415 ORTHO05D006242 5.1e-68 263.5 228 60.1
TPR.G12905 Trifolium pratense HOM05D005415 ORTHO05D006242 1.2e-64 252.3 291 51.9
Os04g0391000 Oryza sativa ssp. japonica HOM05D005415 ORTHO05D006242 1.0e-63 249.2 274 51.5
Gohir.A07G049360 Gossypium hirsutum HOM05D005415 ORTHO05D006242 3.5e-61 240.7 183 66.1
Mapoly0147s0014 Marchantia polymorpha HOM05D005415 ORTHO05D006242 6.7e-60 236.5 722 36.8
TPR.G12965 Trifolium pratense HOM05D005415 ORTHO05D006242 6.3e-58 229.9 187 61.5
Pp3c4_19920 Physcomitrium patens HOM05D005415 ORTHO05D006242 4.1e-57 227.3 665 32.8
SMO146G0239 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.3e-52 211.5 656 28.0
SHI31561 Sapria himalayana HOM05D005415 ORTHO05D006242 3.9e-52 210.7 227 52.9
AagrBONN_evm.TU.Sc2ySwM_117.2504 Anthoceros agrestis HOM05D005415 ORTHO05D006242 2.0e-51 208.4 236 47.9
SMO173G0006 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 3.7e-50 204.1 656 27.4
SMO146G0204 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 2.0e-48 198.4 655 27.2
TAR629G1046 Trochodendron aralioides HOM05D005415 ORTHO05D006242 1.0e-47 196.1 139 69.1
SMO173G0041 Selaginella moellendorffii HOM05D005415 ORTHO05D006242 3.0e-44 184.5 208 50.0
SHI10702 Sapria himalayana HOM05D005415 ORTHO05D006242 1.1e-41 176.0 238 42.9
CBR_g45436 Chara braunii HOM05D005415 ORTHO05D006242 3.8e-39 167.5 232 38.4
SHI10695 Sapria himalayana HOM05D005415 ORTHO05D006242 2.0e-35 155.2 169 50.3
SHI31560 Sapria himalayana HOM05D000002 ORTHO05D000001 1.5e-27 129.0 143 51.0
MCO10G310 Micromonas commoda HOM05D005415 ORTHO05D006242 3.4e-27 127.9 242 35.5
CSS0026788 Camellia sinensis var. sinensis HOM05D005415 ORTHO05D006242 4.4e-27 127.5 101 61.4
Cre17.g712450 Chlamydomonas reinhardtii HOM05D005415 ORTHO05D006242 5.9e-24 117.1 227 33.5
PSO302G0032 Papaver somniferum HOM05D005415 ORTHO05D006242 7.7e-24 116.7 206 37.9
SEGI_11582 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 5.2e-20 104.0 80 63.8
PRCOL_00000625 Prasinoderma coloniale HOM05D005415 ORTHO05D006242 1.5e-19 102.4 122 45.9
TAR381G1645 Trochodendron aralioides HOM05D005415 ORTHO05D006242 5.7e-19 100.5 66 69.7
PSO478G1426 Papaver somniferum HOM05D005415 ORTHO05D006242 4.5e-16 90.9 88 52.3
Medtr1g057810 Medicago truncatula HOM05D000559 ORTHO05D000596 2.3e-15 88.6 224 33.0
Medtr1g105150 Medicago truncatula HOM05D000559 ORTHO05D000596 2.3e-15 88.6 224 33.0
PSO063G6924 Papaver somniferum HOM05D005415 ORTHO05D006242 1.9e-14 85.5 165 31.5
Lsat_1_v5_gn_8_99581 Lactuca sativa HOM05D005415 ORTHO05D006242 2.3e-12 78.6 59 67.8
Lsat_1_v5_gn_4_20540 Lactuca sativa HOM05D005415 ORTHO05D006242 4.4e-11 74.3 48 75.0
SHI10696 Sapria himalayana HOM05D005415 ORTHO05D006242 2.9e-10 71.6 49 71.4
SMO146G0197 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 8.3e-10 70.1 130 36.9
SMO146G0246 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 8.3e-10 70.1 130 36.9
HPP92_021692 Vanilla planifolia HOM05D005415 ORTHO05D006242 8.3e-10 70.1 61 59.0
PSO013G0019 Papaver somniferum HOM05D005415 ORTHO05D006242 1.1e-09 69.7 144 36.8
PSO017G3192 Papaver somniferum HOM05D005415 ORTHO05D006242 1.6e-08 65.9 76 47.4
Medtr1g071270 Medicago truncatula HOM05D005415 ORTHO05D006242 3.5e-08 64.7 107 38.3
SEGI_12458 Sequoiadendron giganteum HOM05D005415 ORTHO05D006242 3.5e-08 64.7 79 32.9
PSO063G6394 Papaver somniferum HOM05D005415 ORTHO05D006242 1.0e-07 63.2 56 58.9
SMO173G0064 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 6.6e-07 60.5 115 36.5
SMO173G0067 Selaginella moellendorffii HOM05D025663 ORTHO05D006242 6.6e-07 60.5 115 36.5
Medtr1g069490 Medicago truncatula HOM05D000559 ORTHO05D000596 2.5e-06 58.5 64 48.4


User provided reference genes

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