Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.6e-244 849.0 422 100.0
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 4.4e-186 654.8 420 79.3
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 2.7e-167 592.4 420 70.2
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 3.9e-166 588.6 450 66.9
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 1.1e-157 560.5 423 67.4
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 2.5e-157 559.3 421 66.5
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 3.3e-157 558.9 420 66.9
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.1e-152 543.9 421 64.6
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 3.2e-152 542.3 421 64.4
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 1.3e-148 530.4 420 61.9
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 8.1e-148 527.7 421 63.2
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 2.6e-146 522.7 420 62.6
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 4.5e-146 521.9 420 62.6
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.7e-145 520.0 420 61.4
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 1.7e-145 520.0 420 62.1
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 4.2e-144 515.4 419 61.1
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 5.1e-142 508.4 394 65.2
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 5.6e-141 505.0 419 60.6
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 2.8e-140 502.7 449 59.0
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 1.1e-139 500.7 421 61.5
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 2.4e-139 499.6 421 60.8
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 3.1e-139 499.2 420 59.3
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 7.6e-138 494.6 423 59.3
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 1.3e-137 493.8 420 59.8
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 1.7e-137 493.4 422 59.0
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 2.2e-137 493.0 423 59.6
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 8.4e-137 491.1 431 58.7
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 1.1e-136 490.7 417 59.0
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 1.1e-136 490.7 422 59.2
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 1.4e-136 490.3 423 59.8
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.2e-136 489.2 422 59.0
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 1.2e-135 487.3 417 59.0
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 1.2e-135 487.3 416 58.9
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.5e-135 485.7 422 58.5
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 6.0e-135 485.0 423 57.0
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 7.9e-135 484.6 422 58.8
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 1.8e-134 483.4 416 58.4
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 6.7e-134 481.5 422 59.5
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 1.5e-133 480.3 422 60.2
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.9e-133 479.9 419 58.5
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 2.5e-133 479.6 422 59.2
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 3.3e-133 479.2 423 57.9
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 3.3e-133 479.2 422 58.3
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 4.3e-133 478.8 423 57.2
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 5.7e-133 478.4 419 57.8
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 2.8e-132 476.1 416 57.9
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 4.8e-132 475.3 422 58.1
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 4.8e-132 475.3 422 58.1
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 8.2e-132 474.6 416 58.4
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 1.1e-131 474.2 367 64.6
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.8e-131 473.4 422 57.8
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 1.8e-131 473.4 367 64.9
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 4.1e-131 472.2 423 55.8
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 9.0e-131 471.1 422 58.1
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 1.2e-130 470.7 423 56.5
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 1.5e-130 470.3 416 57.2
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.5e-130 470.3 419 57.3
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 2.0e-130 469.9 416 57.0
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 2.0e-130 469.9 420 58.3
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 4.5e-130 468.8 426 57.5
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 4.5e-130 468.8 317 72.6
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 1.7e-129 466.8 424 56.6
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 2.2e-129 466.5 416 56.5
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 5.0e-129 465.3 404 58.2
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 8.5e-129 464.5 406 57.1
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 1.1e-128 464.2 422 57.6
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 7.2e-128 461.5 395 59.5
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 9.3e-128 461.1 420 57.4
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 2.1e-127 459.9 419 55.8
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 6.7e-126 454.9 395 60.3
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 1.1e-125 454.1 377 61.0
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 4.3e-125 452.2 448 54.5
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.2e-122 444.1 377 60.5
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 2.6e-122 443.0 407 56.5
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 7.7e-122 441.4 419 54.9
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 7.7e-122 441.4 419 54.9
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 1.1e-120 437.6 439 52.4
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 3.2e-120 436.0 422 55.9
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 4.2e-120 435.6 432 52.3
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 7.2e-120 434.9 425 52.7
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 3.6e-119 432.6 433 52.2
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 1.8e-118 430.3 420 51.9
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 2.0e-117 426.8 398 53.8
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 2.0e-117 426.8 406 55.7
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 4.4e-117 425.6 398 53.5
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 5.7e-117 425.2 336 64.3
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 2.4e-115 419.9 406 54.7
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 7.0e-115 418.3 406 54.4
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 9.1e-115 417.9 422 50.0
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 1.5e-114 417.2 398 52.8
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 7.7e-114 414.8 401 55.1
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 1.0e-113 414.5 400 52.2
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 1.4e-112 410.6 414 51.2
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 7.2e-112 408.3 415 50.6
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 9.4e-112 407.9 420 50.5
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 9.4e-112 407.9 420 50.5
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 1.2e-111 407.5 398 51.0
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 4.7e-111 405.6 423 53.2
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.2e-110 402.1 287 68.6
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 9.7e-109 397.9 416 50.2
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 3.7e-108 396.0 358 56.4
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 1.8e-107 393.7 401 50.9
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 5.3e-107 392.1 416 49.0
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 7.0e-107 391.7 416 48.8
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 7.0e-107 391.7 416 48.8
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 1.6e-106 390.6 420 50.2
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.6e-106 389.8 419 50.6
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 3.5e-106 389.4 425 51.8
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.9e-106 388.7 422 51.7
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 5.5e-104 382.1 420 48.1
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 7.2e-104 381.7 270 69.6
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 7.2e-104 381.7 420 48.6
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 8.8e-102 374.8 349 53.9
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.2e-101 374.4 412 48.1
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 1.0e-97 361.3 351 55.3
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 3.8e-97 359.4 312 59.6
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 7.2e-96 355.1 312 59.0
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.8e-94 350.5 306 57.5
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 2.3e-94 350.1 417 47.0
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 6.8e-94 348.6 417 47.0
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 8.3e-92 341.7 313 55.6
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 7.0e-91 338.6 306 56.9
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 2.7e-90 336.7 321 53.9
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.0e-89 334.7 306 55.9
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 5.7e-85 318.9 319 52.0
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 7.5e-85 318.5 306 53.6
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 1.6e-82 310.8 353 43.9
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 4.3e-80 302.8 345 47.5
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 2.9e-76 290.0 257 55.3
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 4.3e-72 276.2 302 48.0
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 2.1e-71 273.9 393 41.2
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.8e-71 273.5 253 55.3
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 3.0e-65 253.4 246 51.6
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 8.1e-63 245.4 233 53.2
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 1.7e-60 237.7 403 38.7
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 4.1e-59 233.0 189 58.2
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 2.8e-55 220.3 332 41.9
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.8e-52 209.9 137 77.4
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 8.7e-41 172.2 137 65.0
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 1.5e-40 171.4 167 49.7
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.3e-40 170.2 116 73.3
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 4.3e-40 169.9 117 73.5
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 8.1e-39 165.6 115 72.2
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 3.1e-38 163.7 115 72.2
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 3.1e-38 163.7 450 30.0
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 9.0e-38 162.2 117 70.1
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 9.0e-38 162.2 116 68.1
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 9.9e-37 158.7 98 79.6
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 2.2e-36 157.5 496 30.8
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 2.4e-30 137.5 116 56.9
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 9.0e-30 135.6 125 57.6
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 3.4e-29 133.7 125 56.8
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 7.6e-29 132.5 101 65.3
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 9.3e-27 125.6 109 57.8
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 9.3e-27 125.6 93 69.9
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 4.6e-26 123.2 169 46.2
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.2e-21 108.6 99 53.5
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 4.2e-19 100.1 97 53.6
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 1.2e-18 98.6 72 73.6
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 8.2e-15 85.9 125 40.8
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 5.9e-13 79.7 54 70.4
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.5e-11 73.2 78 52.6
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 9.4e-11 72.4 59 62.7
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 1.6e-10 71.6 40 85.0
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 3.0e-09 67.4 67 47.8
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 1.1e-06 58.9 66 45.5


User provided reference genes

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