Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 4.0e-306 1053.9 521 100.0
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 4.2e-255 884.4 509 85.1
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 3.0e-245 851.7 493 84.4
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 1.0e-237 826.6 497 82.1
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 2.2e-235 818.9 503 81.1
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 2.8e-235 818.5 512 79.7
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 5.4e-234 814.3 507 78.3
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 9.2e-234 813.5 529 77.1
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 2.0e-233 812.4 517 78.5
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 2.0e-233 812.4 501 81.0
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 3.5e-233 811.6 509 78.0
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 3.5e-233 811.6 514 78.4
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 5.0e-232 807.7 510 78.0
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 6.6e-232 807.4 508 78.0
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 1.9e-231 805.8 508 78.0
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 5.6e-231 804.3 511 79.6
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 6.8e-229 797.3 498 78.5
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 8.9e-229 797.0 507 78.5
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 1.5e-228 796.2 507 77.3
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 1.5e-228 796.2 516 78.1
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 2.0e-228 795.8 513 76.8
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 1.4e-226 789.6 498 78.3
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.0e-225 785.8 510 77.6
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 2.7e-225 785.4 493 79.5
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 4.6e-225 784.6 499 77.6
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.8e-225 783.9 510 77.6
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 7.8e-225 783.9 493 79.3
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 7.8e-225 783.9 510 77.5
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.3e-224 783.1 493 79.3
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 2.3e-224 782.3 511 76.3
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 3.9e-224 781.6 511 77.3
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 6.6e-224 780.8 494 78.9
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 1.1e-223 780.0 497 78.3
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 3.3e-223 778.5 507 76.7
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 7.3e-223 777.3 496 77.2
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 1.2e-222 776.5 515 77.5
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 1.2e-222 776.5 512 76.6
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 1.6e-222 776.2 502 76.9
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 2.8e-222 775.4 502 77.1
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 6.2e-222 774.2 512 74.6
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 1.1e-221 773.5 511 76.5
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 1.1e-221 773.5 488 78.3
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 3.1e-221 771.9 511 75.9
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 7.5e-220 767.3 519 74.6
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 2.2e-219 765.8 509 74.9
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 2.2e-219 765.8 515 74.2
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 1.4e-218 763.1 492 76.6
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 9.2e-218 760.4 506 75.7
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 2.1e-217 759.2 496 76.8
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 2.1e-217 759.2 512 75.0
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 2.7e-217 758.8 506 75.7
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 6.0e-217 757.7 494 76.9
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 1.3e-216 756.5 542 70.5
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 1.7e-216 756.1 519 74.2
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 3.9e-216 755.0 537 72.8
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 5.1e-216 754.6 511 73.6
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.1e-215 753.4 517 72.5
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 1.5e-215 753.1 511 72.8
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 1.9e-215 752.7 599 67.1
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 1.9e-215 752.7 492 76.4
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 2.1e-214 749.2 551 70.1
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 1.1e-213 746.9 496 75.6
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 1.8e-213 746.1 512 74.4
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 1.5e-212 743.0 515 73.8
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 1.7e-211 739.6 518 71.4
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 1.7e-211 739.6 513 75.0
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 2.4e-210 735.7 503 71.4
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 7.1e-210 734.2 478 75.1
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 2.1e-209 732.6 514 71.4
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 2.1e-209 732.6 515 70.9
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 3.9e-208 728.4 510 70.8
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.6e-208 727.6 510 73.3
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 2.8e-206 722.2 510 70.4
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 4.0e-205 718.4 486 74.1
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 5.2e-205 718.0 494 72.1
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 5.8e-204 714.5 554 67.3
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 9.9e-204 713.8 449 78.6
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.3e-203 713.4 516 68.8
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 3.8e-203 711.8 436 81.4
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 2.4e-202 709.1 519 69.9
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 3.5e-201 705.3 487 71.7
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 3.5e-201 705.3 447 77.9
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 5.1e-200 701.4 510 70.2
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 3.3e-199 698.7 522 70.7
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 3.3e-199 698.7 515 71.1
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 2.8e-198 695.7 510 68.6
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 2.8e-198 695.7 510 68.6
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 1.7e-195 686.4 513 67.6
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 2.4e-194 682.6 505 67.7
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 7.1e-194 681.0 525 67.0
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.6e-190 668.7 508 67.3
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 1.1e-189 667.2 489 68.9
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.8e-184 649.8 526 65.2
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 1.1e-183 647.1 512 63.7
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 5.6e-183 644.8 458 71.0
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 9.6e-183 644.0 458 71.0
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 1.6e-182 643.3 493 67.7
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.1e-181 640.6 421 77.4
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 1.3e-179 633.6 495 65.5
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 5.5e-178 628.2 487 65.7
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 7.1e-178 627.9 499 64.9
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 9.3e-178 627.5 472 68.0
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 6.9e-173 611.3 437 70.7
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 2.9e-171 605.9 536 61.2
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 1.4e-170 603.6 364 83.2
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 2.5e-170 602.8 365 83.0
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 5.5e-170 601.7 364 82.7
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 2.2e-166 589.7 520 58.7
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 2.2e-163 579.7 483 63.1
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 5.1e-160 568.5 495 60.0
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 2.5e-159 566.2 496 59.5
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 6.3e-158 561.6 392 72.7
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 8.2e-158 561.2 547 55.2
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 1.5e-156 557.0 386 74.6
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 5.9e-156 555.1 455 64.2
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 3.0e-152 542.7 321 81.6
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 8.5e-147 524.6 355 75.2
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 4.2e-146 522.3 497 55.7
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 6.3e-142 508.4 531 52.9
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 4.1e-133 479.2 425 61.6
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 1.7e-131 473.8 291 78.0
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.7e-126 457.2 479 56.2
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 1.4e-125 454.1 364 67.0
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 1.8e-125 453.8 407 56.8
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 1.5e-122 444.1 342 69.3
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 4.4e-103 379.4 328 63.4
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.7e-102 376.3 322 66.5
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 2.3e-99 367.1 372 57.8
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 5.6e-98 362.5 291 66.7
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.3e-96 357.1 214 82.7
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 1.2e-87 328.2 232 70.7
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 2.3e-75 287.3 226 62.8
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 9.6e-74 282.0 159 83.6
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 1.4e-72 278.1 396 39.9
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 1.6e-65 254.6 305 43.6
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 5.8e-63 246.1 125 88.8
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 8.7e-59 232.3 143 78.3
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 3.3e-58 230.3 142 75.4
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 7.6e-55 219.2 212 59.9
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 8.4e-54 215.7 328 39.9
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 7.4e-50 202.6 198 60.1
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 6.3e-41 172.9 100 78.0
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 2.4e-40 171.0 166 52.4
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 8.5e-38 162.5 115 67.0
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 1.8e-27 128.3 68 82.4
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 1.8e-27 128.3 334 29.0
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 4.5e-23 113.6 449 27.8
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 4.2e-21 107.1 143 49.0
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 9.4e-21 105.9 61 90.2
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 4.7e-20 103.6 87 69.0
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 4.2e-13 80.5 45 80.0
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 2.1e-12 78.2 38 92.1
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 5.2e-11 73.6 60 63.3
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 6.8e-11 73.2 42 71.4
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 4.4e-10 70.5 33 93.9
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.8e-09 67.8 46 58.7
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 2.8e-09 67.8 44 86.4
MBI16_g01586_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 2.4e-08 64.7 51 76.5
MBI17_g35264_MAGBIO Magnolia biondii HOM05D044048 ORTHO05D242695 5.4e-08 63.5 30 96.7


User provided reference genes

Program Settings