Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI06_g06689_MAGBIO Magnolia biondii HOM05D004333 ORTHO05D005363 0.0e+00 4816.9 2466 100.0
TAR633G0098 Trochodendron aralioides HOM05D004333 ORTHO05D005363 0.0e+00 3087.0 2465 65.4
Nn7g38041 Nelumbo nucifera HOM05D004333 ORTHO05D005363 0.0e+00 2851.6 2460 60.6
Dinv32109 Davidia involucrata HOM05D004333 ORTHO05D005363 0.0e+00 2778.4 2445 60.0
Actinidia08674 Actinidia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2686.0 2446 57.8
Aqoxy5G04259 Aquilegia oxysepala HOM05D004333 ORTHO05D005363 0.0e+00 2684.1 2514 57.4
PSO063G3257 Papaver somniferum HOM05D004333 ORTHO05D005363 0.0e+00 2620.9 2502 56.3
Cfa016195 Carpinus fangiana HOM05D004333 ORTHO05D005363 0.0e+00 2605.5 2446 57.3
Manes.01G037200 Manihot esculenta HOM05D004333 ORTHO05D005363 0.0e+00 2583.1 2442 56.3
QL11p010725 Quercus lobata HOM05D004333 ORTHO05D005363 0.0e+00 2582.7 2474 55.9
Prupe.2G315300 Prunus persica HOM05D004333 ORTHO05D005363 0.0e+00 2581.2 2446 56.9
Haze_00260 Corylus avellana HOM05D004333 ORTHO05D005363 0.0e+00 2569.3 2496 56.0
CiPaw.05G200800 Carya illinoinensis HOM05D004333 ORTHO05D005363 0.0e+00 2553.9 2431 56.3
Lj1C1024G7 Lonicera japonica HOM05D004333 ORTHO05D005363 0.0e+00 2546.9 2505 55.2
Rhsim03G0212200 Rhododendron simsii HOM05D004333 ORTHO05D005363 0.0e+00 2545.0 2349 57.5
vmacro06413 Vaccinium macrocarpon HOM05D004333 ORTHO05D005363 0.0e+00 2541.9 2407 56.0
Thecc.03G204400 Theobroma cacao HOM05D004333 ORTHO05D005363 0.0e+00 2537.3 2506 54.5
Sabra15G0006500 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2536.9 2431 55.7
MD07G1295800 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2532.3 2438 55.8
RcHm_v2.0_Chr1g0381961 Rosa chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2530.4 2447 55.7
Potri.015G008500 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2525.4 2429 55.5
Potri.012G020000 Populus trichocarpa HOM05D004333 ORTHO05D005363 0.0e+00 2516.1 2430 55.3
TWI39G1232 Tripterygium wilfordii HOM05D004333 ORTHO05D005363 0.0e+00 2515.7 2441 55.0
FvH4_7g32380 Fragaria vesca HOM05D004333 ORTHO05D005363 0.0e+00 2513.4 2445 54.7
Sabra12G0012900 Salix brachista HOM05D004333 ORTHO05D005363 0.0e+00 2505.3 2426 54.9
FAN10G1078 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2501.9 2479 54.0
FAN06G4186 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2500.7 2479 53.9
FAN03G1314 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2492.2 2479 54.0
FAN10G0319 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2487.2 2479 53.9
Ciclev10000006m.g Citrus clementina HOM05D004333 ORTHO05D005363 0.0e+00 2484.1 2443 54.4
Gohir.D12G248500 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2478.4 2465 53.6
Gorai.008G266500 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 2471.8 2465 53.5
Gohir.A12G247800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 2464.1 2518 52.6
MD01G1225300 Malus domestica HOM05D004333 ORTHO05D005363 0.0e+00 2459.1 2439 54.7
CANSAT21G1061 Cannabis sativa HOM05D004333 ORTHO05D005363 0.0e+00 2413.3 2468 52.9
GSVIVG01038603001 Vitis vinifera HOM05D004333 ORTHO05D005363 0.0e+00 2399.0 2466 53.7
ATR0697G293 Amborella trichopoda HOM05D004333 ORTHO05D005363 0.0e+00 2358.9 2425 52.7
DCAR_020346 Daucus carota HOM05D004333 ORTHO05D005363 0.0e+00 2353.2 2421 52.5
Lj1g0003347 Lotus japonicus HOM05D004333 ORTHO05D005363 0.0e+00 2351.6 2443 51.9
Nitab4.5_0010367g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2350.5 2419 52.0
Glyma.04G232700 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2349.3 2438 52.4
Sopen03g022440 Solanum pennellii HOM05D004333 ORTHO05D005363 0.0e+00 2333.9 2506 50.7
Ca_16734_v3 Cicer arietinum L. HOM05D004333 ORTHO05D005363 0.0e+00 2329.7 2440 51.8
Medtr3g091940 Medicago truncatula HOM05D004333 ORTHO05D005363 0.0e+00 2326.6 2443 51.6
Lalb_Chr08g0240011 Lupinus albus HOM05D004333 ORTHO05D005363 0.0e+00 2323.5 2463 51.7
Cc02_g01170 Coffea canephora HOM05D004333 ORTHO05D005363 0.0e+00 2323.1 2444 51.1
arahy.Tifrunner.gnm1.ann1.F5KWPZ Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2318.5 2445 51.6
TPR.G33633 Trifolium pratense HOM05D004333 ORTHO05D005363 0.0e+00 2317.7 2450 51.9
FAN20G1934 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2317.0 2475 51.0
FAN01G1860 Fragaria x ananassa HOM05D004333 ORTHO05D005363 0.0e+00 2315.4 2477 51.1
Hund21026 Selenicereus undatus HOM05D004333 ORTHO05D005363 0.0e+00 2308.5 2447 51.8
arahy.Tifrunner.gnm1.ann1.SMAV3X Arachis hypogaea HOM05D004333 ORTHO05D005363 0.0e+00 2306.9 2470 51.0
Nitab4.5_0008197g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 0.0e+00 2305.0 2446 51.4
Glyma.06G132300 Glycine max HOM05D004333 ORTHO05D005363 0.0e+00 2301.6 2449 51.4
Phvul.009G048100 Phaseolus vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2299.6 2445 51.5
AUR62010404 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2288.1 2452 51.0
Peaxi162Scf00740g00426 Petunia axillaris HOM05D004333 ORTHO05D005363 0.0e+00 2280.4 2472 49.7
ClCG03G011440 Citrullus lanatus HOM05D004333 ORTHO05D005363 0.0e+00 2277.3 2475 50.3
Atru.chr12.2311 Acer truncatum HOM05D004333 ORTHO05D005363 0.0e+00 2276.9 2113 57.6
Migut.F00177 Erythranthe guttata HOM05D004333 ORTHO05D005363 0.0e+00 2270.7 2515 49.2
MSTRG.27005 Avicennia marina HOM05D004333 ORTHO05D005363 0.0e+00 2268.8 2443 50.2
Sc19g0000760 Simmondsia chinensis HOM05D004333 ORTHO05D005363 0.0e+00 2268.4 2447 50.3
AUR62016813 Chenopodium quinoa HOM05D004333 ORTHO05D005363 0.0e+00 2263.0 2421 50.9
EL10Ac9g21652 Beta vulgaris HOM05D004333 ORTHO05D005363 0.0e+00 2260.3 2454 50.0
HanXRQChr04g0107121 Helianthus annuus HOM05D004333 ORTHO05D005363 0.0e+00 2258.8 2464 49.0
CDE02G3740 Ceratophyllum demersum HOM05D004333 ORTHO05D005363 0.0e+00 2254.6 2395 50.6
Ah.01g018970 Amaranthus hybridus HOM05D004333 ORTHO05D005363 0.0e+00 2232.2 2464 50.1
PGR142G3828 Punica granatum HOM05D004333 ORTHO05D005363 0.0e+00 2228.4 2459 49.7
MELO3C010103.2 Cucumis melo HOM05D004333 ORTHO05D005363 0.0e+00 2227.2 2469 49.9
Sed0018682 Sechium edule HOM05D004333 ORTHO05D005363 0.0e+00 2224.5 2449 50.1
CARHR189090 Cardamine hirsuta HOM05D004333 ORTHO05D005363 0.0e+00 2223.4 2429 49.1
AL6G35880 Arabidopsis lyrata HOM05D004333 ORTHO05D005363 0.0e+00 2217.6 2462 48.6
SGA_v2.0_scaffold18G08437 Striga asiatica HOM05D004333 ORTHO05D005363 0.0e+00 2216.0 2471 49.0
CsaV3_1G044960 Cucumis sativus L. HOM05D004333 ORTHO05D005363 0.0e+00 2209.5 2474 49.2
Lsat_1_v5_gn_9_49400 Lactuca sativa HOM05D004333 ORTHO05D005363 0.0e+00 2203.3 2434 48.6
CSS0015753 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2202.6 2108 56.8
CSS0025528 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 0.0e+00 2199.1 2107 56.6
C07p43390 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2197.9 2438 49.3
Thhalv10003502m.g Eutrema salsugineum HOM05D004333 ORTHO05D005363 0.0e+00 2196.4 2427 49.4
AT5G24350 Arabidopsis thaliana HOM05D004333 ORTHO05D005363 0.0e+00 2194.5 2431 48.4
A06p35170 Brassica napus HOM05D004333 ORTHO05D005363 0.0e+00 2189.8 2464 49.0
BolC7t44866H Brassica oleracea HOM05D004333 ORTHO05D005363 0.0e+00 2181.0 2465 48.7
Sp2g22970 Schrenkiella parvula HOM05D004333 ORTHO05D005363 0.0e+00 2180.2 2426 48.8
BraA06t26437Z Brassica rapa HOM05D004333 ORTHO05D005363 0.0e+00 2174.8 2487 48.5
Aa31LG11G3630 Aethionema arabicum HOM05D004333 ORTHO05D005363 0.0e+00 2164.0 2431 48.7
BcaNung01227 Brassica carinata HOM05D004333 ORTHO05D005363 0.0e+00 2146.7 2395 49.1
Duzib068G0008 Durio zibethinus HOM05D004333 ORTHO05D005363 0.0e+00 2100.1 2463 48.4
THA.LOC104798907 Tarenaya hassleriana HOM05D004333 ORTHO05D005363 0.0e+00 2097.8 2462 47.1
COL.COLO4_16822 Corchorus olitorius HOM05D004333 ORTHO05D005363 0.0e+00 2069.7 2443 48.5
Zm00001eb359130 Zea mays HOM05D004333 ORTHO05D005363 0.0e+00 2020.0 2484 46.3
ECA232G2446 Erigeron canadensis HOM05D004333 ORTHO05D005363 0.0e+00 1996.5 2339 47.5
Psat5g074840 Pisum sativum HOM05D004333 ORTHO05D005363 0.0e+00 1826.6 1816 53.5
Gorai.006G202800 Gossypium raimondii HOM05D004333 ORTHO05D005363 0.0e+00 1672.1 1487 58.8
Gohir.A09G185800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1656.3 1487 58.6
unitig_0.g2452 Utricularia gibba HOM05D004333 ORTHO05D005363 0.0e+00 1603.2 2363 40.8
VMungo1309G3147 Vigna mungo HOM05D004333 ORTHO05D005363 0.0e+00 1526.1 1563 53.4
Carub.0006s2218 Capsella rubella HOM05D004333 ORTHO05D005363 0.0e+00 1518.1 1677 50.0
HPP92_002817 Vanilla planifolia HOM05D004333 ORTHO05D005363 0.0e+00 1424.8 1517 50.1
Cpa.g.c29767.1 Carica papaya HOM05D004333 ORTHO05D005363 0.0e+00 1386.7 1396 54.3
Gohir.D09G180800 Gossypium hirsutum HOM05D004333 ORTHO05D005363 0.0e+00 1374.4 1123 62.6
Solyc03g082680.4 Solanum lycopersicum HOM05D004333 ORTHO05D005363 0.0e+00 1357.4 1471 50.7
CAN.G481.60 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1256.9 1390 49.6
CAN.G481.57 Capsicum annuum HOM05D004333 ORTHO05D005363 0.0e+00 1176.8 1429 46.7
Eucgr.D00250 Eucalyptus grandis HOM05D004333 ORTHO05D005363 0.0e+00 1167.5 1154 53.7
SalBow4G2088 Salvia bowleyana HOM05D004333 ORTHO05D005363 0.0e+00 1151.0 1059 56.6
AagrBONN_evm.TU.Sc2ySwM_362.1567 Anthoceros agrestis HOM05D004333 ORTHO05D005363 2.5e-289 1000.3 2566 29.2
CAN.G481.56 Capsicum annuum HOM05D004333 ORTHO05D005363 3.3e-289 1000.0 1033 51.8
Aa31LG11G3970 Aethionema arabicum HOM05D004333 ORTHO05D005363 8.3e-277 958.7 1029 49.8
SEGI_24760 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.3e-256 891.7 1460 38.4
Mapoly0143s0007 Marchantia polymorpha HOM05D004333 ORTHO05D005363 3.4e-254 883.6 2034 31.4
Pp3c1_3140 Physcomitrium patens HOM05D004333 ORTHO05D005363 6.0e-243 846.3 2157 30.7
SHI08278 Sapria himalayana HOM05D004333 ORTHO05D005363 2.0e-238 831.2 1404 38.2
VMungo1309G1648 Vigna mungo HOM05D004333 ORTHO05D005363 3.0e-218 764.2 887 47.1
CBR_g48777 Chara braunii HOM05D004333 ORTHO05D005363 2.6e-217 761.1 2631 26.2
Psat0s2221g0080 Pisum sativum HOM05D004333 ORTHO05D005363 5.7e-217 760.0 870 47.8
Carub.0006s2217 Capsella rubella HOM05D004333 ORTHO05D005363 6.5e-197 693.3 772 45.7
SMO356G0059 Selaginella moellendorffii HOM05D004333 ORTHO05D005363 6.0e-174 617.1 809 42.2
Eucgr.D00251 Eucalyptus grandis HOM05D004333 ORTHO05D005363 1.2e-153 549.7 785 41.7
Oeu001936.1 Olea europaea HOM05D004333 ORTHO05D005363 4.9e-144 517.7 560 48.9
Cpa.g.c45444 Carica papaya HOM05D004333 ORTHO05D005363 5.9e-113 414.5 315 63.5
CSS0044449 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 3.9e-109 401.7 474 48.9
Actinidia34248 Actinidia chinensis HOM05D004333 ORTHO05D005363 2.8e-107 395.6 503 46.5
CSS0041108 Camellia sinensis var. sinensis HOM05D004333 ORTHO05D005363 2.6e-105 389.0 483 47.0
Psat1g135480 Pisum sativum HOM05D004333 ORTHO05D005363 2.0e-100 372.9 268 67.2
SHI08285 Sapria himalayana HOM05D004333 ORTHO05D000009 4.5e-89 335.1 326 54.3
SEGI_07013 Sequoiadendron giganteum HOM05D004333 ORTHO05D000001 1.2e-86 327.0 443 43.1
CAN.G481.55 Capsicum annuum HOM05D004333 ORTHO05D005363 4.8e-83 315.1 377 44.8
SEGI_10720 Sequoiadendron giganteum HOM05D004333 ORTHO05D005363 1.4e-82 313.5 474 36.9
Actinidia34249 Actinidia chinensis HOM05D004333 ORTHO05D005363 3.1e-82 312.4 321 54.5
Os12g0233600 Oryza sativa ssp. japonica HOM05D004333 ORTHO05D005363 9.5e-79 300.8 433 44.1
SHI08286 Sapria himalayana HOM05D004333 ORTHO05D005363 7.7e-73 281.2 355 43.7
CAN.G481.58 Capsicum annuum HOM05D004333 ORTHO05D005363 5.2e-69 268.5 223 59.2
Nitab4.5_0004178g0060 Nicotiana tabacum HOM05D004333 ORTHO05D005363 3.3e-55 222.6 334 39.8
Psat0s3076g0080 Pisum sativum HOM05D004333 ORTHO05D001713 1.6e-49 203.8 170 62.4
Nitab4.5_0004178g0050 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.6e-49 202.2 279 44.4
Psat4g066600 Pisum sativum HOM05D004333 ORTHO05D005363 6.6e-48 198.4 152 63.2
CAN.G481.59 Capsicum annuum HOM05D004333 ORTHO05D005363 1.4e-45 190.7 121 75.2
Nitab4.5_0004178g0040 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.6e-44 186.4 187 53.5
SHI08279 Sapria himalayana HOM05D004333 ORTHO05D005363 2.1e-41 176.8 148 60.1
CAN.G3762.1 Capsicum annuum HOM05D004333 ORTHO05D005363 3.0e-40 172.9 220 43.2
Lj4g0026522 Lotus japonicus HOM05D004333 ORTHO05D005363 1.5e-39 170.6 141 60.3
arahy.Tifrunner.gnm1.ann1.7A8JPA Arachis hypogaea HOM05D004333 ORTHO05D005363 2.6e-36 159.8 135 62.2
MCO09G360 Micromonas commoda HOM05D004333 ORTHO05D005363 1.6e-33 150.6 1121 21.1
Psat1g176920 Pisum sativum HOM05D004333 ORTHO05D005363 1.0e-32 147.9 112 65.2
Oeu001937.1 Olea europaea HOM05D004333 ORTHO05D005363 1.1e-29 137.9 192 44.3
Oeu049088.1 Olea europaea HOM05D004333 ORTHO05D005363 1.5e-28 134.0 97 68.0
Psat1g100720 Pisum sativum HOM05D004333 ORTHO05D005363 8.4e-27 128.3 321 31.8
Nitab4.5_0004178g0010 Nicotiana tabacum HOM05D004333 ORTHO05D005363 2.4e-26 126.7 271 29.5
BcaNung02039 Brassica carinata HOM05D004333 ORTHO05D005363 7.4e-23 115.2 328 30.8
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 1.1e-21 111.3 121 47.1
Psat1g176800 Pisum sativum HOM05D004029 ORTHO05D004613 1.5e-20 107.5 83 62.7
SHI08287 Sapria himalayana HOM05D004333 ORTHO05D005363 4.5e-20 105.9 162 38.9
Psat6g091080 Pisum sativum HOM05D004333 ORTHO05D005363 2.9e-19 103.2 140 39.3
Psat3g000280 Pisum sativum HOM05D002984 ORTHO05D005363 2.1e-17 97.1 107 43.9
Nitab4.5_0004178g0020 Nicotiana tabacum HOM05D004333 ORTHO05D005363 6.0e-17 95.5 196 35.2
Psat4g128000 Pisum sativum HOM05D002621 ORTHO05D004807 6.9e-13 82.0 114 41.2
Psat6g175840 Pisum sativum HOM05D006947 ORTHO05D005363 9.0e-13 81.6 114 41.2
Cre09.g415400 Chlamydomonas reinhardtii HOM05D004333 ORTHO05D005363 2.7e-09 70.1 246 23.6
Nitab4.5_0004178g0070 Nicotiana tabacum HOM05D004333 ORTHO05D005363 4.6e-09 69.3 65 47.7
Psat0s2975g0120 Pisum sativum HOM05D000832 ORTHO05D013522 3.0e-08 66.6 76 44.7
ATR0697G222 Amborella trichopoda HOM05D004333 ORTHO05D038300 5.7e-07 62.4 79 41.8


User provided reference genes

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