Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI05_g43154_MAGBIO Magnolia biondii HOM05D007700 ORTHO05D009669 1.1e-129 467.6 258 100.0
Nn6g31772 Nelumbo nucifera HOM05D007700 ORTHO05D009669 7.4e-70 268.9 276 56.9
TAR625G0909 Trochodendron aralioides HOM05D007700 ORTHO05D009669 4.6e-56 223.0 273 50.9
Sopen02g027760 Solanum pennellii HOM05D007700 ORTHO05D009669 2.5e-54 217.2 265 49.1
HPP92_025432 Vanilla planifolia HOM05D007700 ORTHO05D009669 5.7e-54 216.1 280 48.6
CANSAT25G3310 Cannabis sativa HOM05D007700 ORTHO05D009669 2.2e-53 214.2 265 48.3
PGSC0003DMG400040241 Solanum tuberosum HOM05D007700 ORTHO05D009669 3.7e-53 213.4 265 48.7
Thecc.01G008500 Theobroma cacao HOM05D007700 ORTHO05D009669 1.8e-52 211.1 262 47.3
QL06p052538 Quercus lobata HOM05D007700 ORTHO05D009669 7.7e-51 205.7 268 45.1
Cc00_g14260 Coffea canephora HOM05D007700 ORTHO05D009669 1.3e-50 204.9 272 46.3
Eucgr.I02272 Eucalyptus grandis HOM05D007700 ORTHO05D009669 2.9e-50 203.8 274 44.9
Actinidia22918 Actinidia chinensis HOM05D007700 ORTHO05D009669 5.0e-50 203.0 267 43.8
Rhsim10G0203000 Rhododendron simsii HOM05D000242 ORTHO05D009669 8.5e-50 202.2 202 53.5
Gohir.D03G003800 Gossypium hirsutum HOM05D007700 ORTHO05D009669 1.4e-49 201.4 265 45.3
Rhsim10G0201800 Rhododendron simsii HOM05D000242 ORTHO05D009669 2.5e-49 200.7 202 53.0
Dinv40165 Davidia involucrata HOM05D007700 ORTHO05D009669 3.2e-49 200.3 275 44.4
vmacro20514 Vaccinium macrocarpon HOM05D007700 ORTHO05D009669 3.2e-49 200.3 270 51.1
Thhalv10022683m.g Eutrema salsugineum HOM05D007700 ORTHO05D009669 7.2e-49 199.1 267 44.2
VMungo0331G0753 Vigna mungo HOM05D007700 ORTHO05D009669 1.6e-48 198.0 268 45.5
Gorai.003G004000 Gossypium raimondii HOM05D007700 ORTHO05D009669 3.6e-48 196.8 266 44.4
Atru.chr3.942 Acer truncatum HOM05D007700 ORTHO05D009669 6.1e-48 196.1 277 43.0
Lj3g0022870 Lotus japonicus HOM05D007700 ORTHO05D009669 7.9e-48 195.7 265 44.2
Lj2P490T20 Lonicera japonica HOM05D007700 ORTHO05D009669 1.0e-47 195.3 264 44.3
Aa31LG8G14930 Aethionema arabicum HOM05D007700 ORTHO05D009669 2.3e-47 194.1 263 43.0
ClCG01G020760 Citrullus lanatus HOM05D007700 ORTHO05D009669 2.3e-47 194.1 265 43.0
Manes.01G153300 Manihot esculenta HOM05D007700 ORTHO05D009669 2.3e-47 194.1 266 44.0
arahy.Tifrunner.gnm1.ann1.PXC5PH Arachis hypogaea HOM05D007700 ORTHO05D009669 1.1e-46 191.8 275 43.3
Sabra05G0085500 Salix brachista HOM05D007700 ORTHO05D009669 2.5e-46 190.7 268 44.4
MELO3C007960.2 Cucumis melo HOM05D007700 ORTHO05D009669 5.7e-46 189.5 265 43.8
Potri.005G103300 Populus trichocarpa HOM05D007700 ORTHO05D009669 9.7e-46 188.7 265 42.6
AL3G50640 Arabidopsis lyrata HOM05D007700 ORTHO05D009669 2.8e-45 187.2 267 41.6
arahy.Tifrunner.gnm1.ann1.HE2L98 Arachis hypogaea HOM05D007700 ORTHO05D009669 6.3e-45 186.0 270 43.3
C09p13500 Brassica napus HOM05D007700 ORTHO05D009669 6.3e-45 186.0 263 43.0
BolC9t54240H Brassica oleracea HOM05D007700 ORTHO05D009669 6.3e-45 186.0 263 43.0
BraA09t36788Z Brassica rapa HOM05D007700 ORTHO05D009669 6.3e-45 186.0 275 41.8
Solyc02g082970.1 Solanum lycopersicum HOM05D007700 ORTHO05D009669 1.4e-44 184.9 267 44.2
Glyma.07G109000 Glycine max HOM05D007700 ORTHO05D009669 1.8e-44 184.5 266 44.4
Dinv08534 Davidia involucrata HOM05D007700 ORTHO05D009669 4.1e-44 183.3 147 60.5
AT2G17670 Arabidopsis thaliana HOM05D007700 ORTHO05D009669 5.3e-44 183.0 263 41.4
A09p11480 Brassica napus HOM05D007700 ORTHO05D009669 9.1e-44 182.2 263 41.4
Medtr8g005870 Medicago truncatula HOM05D007700 ORTHO05D009669 9.1e-44 182.2 269 47.6
Sp3g31020 Schrenkiella parvula HOM05D007700 ORTHO05D009669 9.1e-44 182.2 263 42.2
THA.LOC104804288 Tarenaya hassleriana HOM05D007700 ORTHO05D009669 3.4e-43 180.3 263 41.1
HanXRQChr07g0192051 Helianthus annuus HOM05D007700 ORTHO05D009669 4.5e-43 179.9 273 50.5
CiPaw.07G004600 Carya illinoinensis HOM05D007700 ORTHO05D009669 5.9e-43 179.5 265 42.3
Ca_23118_v3 Cicer arietinum L. HOM05D007700 ORTHO05D009669 1.0e-42 178.7 263 42.6
Psat4g208920 Pisum sativum HOM05D007700 ORTHO05D009669 1.3e-42 178.3 263 44.9
DCAR_023138 Daucus carota HOM05D007700 ORTHO05D009669 2.2e-42 177.6 202 50.5
PGR119G0746 Punica granatum HOM05D007700 ORTHO05D009669 2.2e-42 177.6 264 40.5
BcaB07g31715 Brassica carinata HOM05D007700 ORTHO05D009669 3.8e-42 176.8 264 44.3
Sed0015131 Sechium edule HOM05D000242 ORTHO05D009669 5.5e-41 172.9 248 41.9
TPR.G28737 Trifolium pratense HOM05D007700 ORTHO05D009669 5.5e-41 172.9 265 42.6
CDE05G1147 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 9.4e-41 172.2 248 41.5
Cfa007052 Carpinus fangiana HOM05D007700 ORTHO05D009669 2.7e-40 170.6 272 42.6
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 3.6e-40 170.2 268 42.2
Ciclev10025555m.g Citrus clementina HOM05D007700 ORTHO05D009669 4.4e-38 163.3 264 41.3
Migut.C00922 Erythranthe guttata HOM05D007700 ORTHO05D009669 9.7e-38 162.2 165 53.3
SalBow7G3569 Salvia bowleyana HOM05D007700 ORTHO05D009669 1.1e-36 158.7 232 44.4
CsaV3_6G047710 Cucumis sativus L. HOM05D007700 ORTHO05D009669 2.4e-36 157.5 268 37.7
SGA_v2.0_scaffold275G46573 Striga asiatica HOM05D007700 ORTHO05D009669 1.5e-35 154.8 232 43.5
Gohir.A02G176100 Gossypium hirsutum HOM05D007700 ORTHO05D009669 2.9e-34 150.6 144 51.4
Lsat_1_v5_gn_2_74520 Lactuca sativa HOM05D007700 ORTHO05D009669 1.9e-33 147.9 278 39.6
Prupe.7G178400 Prunus persica HOM05D007700 ORTHO05D009669 1.9e-33 147.9 265 40.4
Phvul.010G056500 Phaseolus vulgaris HOM05D007700 ORTHO05D009669 4.2e-33 146.7 271 39.1
CAN.G890.59 Capsicum annuum HOM05D007700 ORTHO05D009669 5.5e-33 146.4 146 52.1
Nitab4.5_0003207g0040 Nicotiana tabacum HOM05D007700 ORTHO05D009669 5.5e-33 146.4 146 52.1
Nitab4.5_0001581g0090 Nicotiana tabacum HOM05D007700 ORTHO05D009669 1.6e-32 144.8 146 51.4
CARHR107900 Cardamine hirsuta HOM05D007700 ORTHO05D009669 4.7e-32 143.3 224 41.1
Carub.0003s3177 Capsella rubella HOM05D007700 ORTHO05D009669 5.2e-31 139.8 234 37.2
ATR0661G421 Amborella trichopoda HOM05D007700 ORTHO05D009669 1.8e-28 131.3 119 61.3
COL.COLO4_22522 Corchorus olitorius HOM05D007700 ORTHO05D009669 2.4e-28 131.0 263 36.1
MSTRG.1126 Avicennia marina HOM05D007700 ORTHO05D009669 3.1e-28 130.6 223 42.6
Peaxi162Scf01310g10029 Petunia axillaris HOM05D007700 ORTHO05D009669 2.0e-27 127.9 266 42.1
BcaC04g22956 Brassica carinata HOM05D007700 ORTHO05D009669 5.9e-27 126.3 112 55.4
MD02G1120600 Malus domestica HOM05D007700 ORTHO05D009669 2.9e-26 124.0 264 34.1
TWI73G0108 Tripterygium wilfordii HOM05D007700 ORTHO05D009669 3.2e-25 120.6 201 38.8
Lalb_Chr03g0039951 Lupinus albus HOM05D007700 ORTHO05D009669 2.1e-24 117.9 195 40.5
Aqoxy6G01792 Aquilegia oxysepala HOM05D007700 ORTHO05D009669 2.7e-24 117.5 212 39.2
EL10Ac6g13369 Beta vulgaris HOM05D007700 ORTHO05D009669 3.0e-23 114.0 209 38.3
FAN23G0395 Fragaria x ananassa HOM05D007700 ORTHO05D009669 3.0e-23 114.0 190 38.4
FvH4_1g10671 Fragaria vesca HOM05D007700 ORTHO05D009669 6.7e-23 112.8 190 38.4
Ah.03g134060 Amaranthus hybridus HOM05D007700 ORTHO05D009669 2.8e-21 107.5 200 38.5
SHI08474 Sapria himalayana HOM05D007700 ORTHO05D009669 6.3e-21 106.3 107 48.6
AUR62041102 Chenopodium quinoa HOM05D007700 ORTHO05D009669 2.2e-18 97.8 194 36.1
AUR62026170 Chenopodium quinoa HOM05D007700 ORTHO05D009669 3.8e-18 97.1 194 35.1
Sc03g0003890 Simmondsia chinensis HOM05D007700 ORTHO05D009669 1.5e-17 95.1 190 44.7
CDE05G1645 Ceratophyllum demersum HOM05D007700 ORTHO05D009669 4.2e-17 93.6 73 60.3
ATR0739G057 Amborella trichopoda HOM05D007700 ORTHO05D009669 3.0e-15 87.4 229 34.9
Glyma.03G117900 Glycine max HOM05D007700 ORTHO05D009669 1.3e-13 82.0 260 30.4
Actinidia17391 Actinidia chinensis HOM05D000192 ORTHO05D000123 2.7e-11 74.3 114 41.2
VMungo0720G3091 Vigna mungo HOM05D000855 ORTHO05D008530 1.5e-09 68.6 122 33.6
CAN.G1081.5 Capsicum annuum HOM05D000058 ORTHO05D000255 3.3e-09 67.4 105 35.2
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 4.2e-09 67.0 122 32.8
arahy.Tifrunner.gnm1.ann1.LQ1LZI Arachis hypogaea HOM05D007409 ORTHO05D009264 1.6e-08 65.1 122 29.5
AT3G61520 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 2.1e-08 64.7 146 28.8
Phvul.007G163500 Phaseolus vulgaris HOM05D000855 ORTHO05D008530 2.8e-08 64.3 122 32.0
Rhsim02G0072100 Rhododendron simsii HOM05D007128 ORTHO05D009059 6.1e-08 63.2 166 28.3
AL5G43880 Arabidopsis lyrata HOM05D003900 ORTHO05D005009 8.0e-08 62.8 149 27.5
AT5G28370 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 1.4e-07 62.0 146 28.1
AT5G28460 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 1.4e-07 62.0 146 28.1
Aa31LG5G8210 Aethionema arabicum HOM05D005584 ORTHO05D006809 1.8e-07 61.6 180 23.9
Cpa.g.sc13.131 Carica papaya HOM05D007402 ORTHO05D003673 2.3e-07 61.2 100 34.0
Peaxi162Scf00454g00034 Petunia axillaris HOM05D007402 ORTHO05D003673 2.3e-07 61.2 96 33.3
Lj6A226T36 Lonicera japonica HOM05D006556 ORTHO05D008146 3.0e-07 60.8 186 29.0
Dinv35708 Davidia involucrata HOM05D000855 ORTHO05D008530 4.0e-07 60.5 123 28.5
Migut.A00274 Erythranthe guttata HOM05D000175 ORTHO05D010751 4.0e-07 60.5 101 32.7
Rhsim02G0073500 Rhododendron simsii HOM05D007128 ORTHO05D009059 4.0e-07 60.5 166 27.7
CARHR171850 Cardamine hirsuta HOM05D003900 ORTHO05D005009 5.2e-07 60.1 167 25.7
TPR.G30250 Trifolium pratense HOM05D000855 ORTHO05D008530 5.2e-07 60.1 123 31.7
Nitab4.5_0005913g0040 Nicotiana tabacum HOM05D007402 ORTHO05D003673 6.8e-07 59.7 101 31.7
Manes.08G003100 Manihot esculenta HOM05D000855 ORTHO05D008530 8.9e-07 59.3 123 27.6
EL10Ac7g17325 Beta vulgaris HOM05D007104 ORTHO05D008851 1.2e-06 58.9 147 25.9
Psat6g065880 Pisum sativum HOM05D006895 ORTHO05D008605 1.2e-06 58.9 143 31.5
SGA_v2.0_scaffold48G17965 Striga asiatica HOM05D003039 ORTHO05D008410 1.2e-06 58.9 167 25.7
Hma1.2p1_0631F.1_g192380 Hydrangea macrophylla HOM05D006556 ORTHO05D008146 2.0e-06 58.2 106 31.1
Hma1.2p1_0631F.1_g192390 Hydrangea macrophylla HOM05D006556 ORTHO05D008146 2.0e-06 58.2 106 31.1
Hma1.2p1_0631F.1_g192404 Hydrangea macrophylla HOM05D006556 ORTHO05D008146 2.0e-06 58.2 106 31.1
BcaB02g07375 Brassica carinata HOM05D003900 ORTHO05D005009 2.6e-06 57.8 164 26.8
SMO280G0002 Selaginella moellendorffii HOM05D045537 ORTHO05D002854 2.6e-06 57.8 166 24.1
GSVIVG01021583001 Vitis vinifera HOM05D006556 ORTHO05D008146 2.6e-06 57.8 110 29.1
Cpa.g.sc64.144 Carica papaya HOM05D000424 ORTHO05D000355 3.4e-06 57.4 109 30.3
ECA240G0231 Erigeron canadensis HOM05D000162 ORTHO05D000090 3.4e-06 57.4 142 31.7
Migut.D00798 Erythranthe guttata HOM05D007173 ORTHO05D009151 3.4e-06 57.4 151 27.8
Medtr5g039700 Medicago truncatula HOM05D006503 ORTHO05D008116 3.4e-06 57.4 150 23.3
PSO210G6432 Papaver somniferum HOM05D007155 ORTHO05D003034 3.4e-06 57.4 113 29.2
Actinidia04698 Actinidia chinensis HOM05D000855 ORTHO05D008530 4.4e-06 57.0 179 25.7
Actinidia23531 Actinidia chinensis HOM05D000424 ORTHO05D038032 4.4e-06 57.0 137 32.8
ATR0751G042 Amborella trichopoda HOM05D002460 ORTHO05D002716 4.4e-06 57.0 124 25.8
Aqoxy4G03187 Aquilegia oxysepala HOM05D000855 ORTHO05D008530 4.4e-06 57.0 104 29.8
ClCG08G004220 Citrullus lanatus HOM05D007128 ORTHO05D009059 4.4e-06 57.0 166 26.5
MD06G1231100 Malus domestica HOM05D006707 ORTHO05D008243 4.4e-06 57.0 178 27.0
Sabra16G0092100 Salix brachista HOM05D000855 ORTHO05D008530 4.4e-06 57.0 122 27.9
Ah.08g211930 Amaranthus hybridus HOM05D000855 ORTHO05D008530 5.7e-06 56.6 122 27.9
Medtr5g018230 Medicago truncatula HOM05D006503 ORTHO05D008116 5.7e-06 56.6 150 23.3
Nitab4.5_0000131g0200 Nicotiana tabacum HOM05D007402 ORTHO05D003673 5.7e-06 56.6 101 29.7
Dinv32060 Davidia involucrata HOM05D005973 ORTHO05D007285 7.5e-06 56.2 173 24.3
CSS0013853 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D008530 9.8e-06 55.8 122 26.2
CSS0023086 Camellia sinensis var. sinensis HOM05D000855 ORTHO05D008530 9.8e-06 55.8 122 26.2
Ca_17359_v3 Cicer arietinum L. HOM05D002825 ORTHO05D003824 9.8e-06 55.8 132 27.3
Nitab4.5_0001056g0080 Nicotiana tabacum HOM05D006556 ORTHO05D008146 9.8e-06 55.8 102 28.4
Phvul.004G147700 Phaseolus vulgaris HOM05D004271 ORTHO05D006011 9.8e-06 55.8 97 33.0


User provided reference genes

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