Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI05_g05143_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 1.2e-213 746.1 352 100.0
Hma1.2p1_0507F.1_g168410 Hydrangea macrophylla HOM05D005066 ORTHO05D006138 3.3e-171 605.1 350 78.9
CSS0029951 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 6.3e-170 600.9 352 79.8
Prupe.1G355000 Prunus persica HOM05D005066 ORTHO05D006138 6.3e-170 600.9 352 77.6
Aqoxy5G01046 Aquilegia oxysepala HOM05D005066 ORTHO05D006138 3.1e-169 598.6 347 79.0
Actinidia37971 Actinidia chinensis HOM05D005066 ORTHO05D006138 5.3e-169 597.8 352 80.7
GSVIVG01008680001 Vitis vinifera HOM05D005066 ORTHO05D006138 5.3e-169 597.8 352 79.3
Manes.18G005800 Manihot esculenta HOM05D005066 ORTHO05D006138 7.0e-169 597.4 351 78.6
CiPaw.07G139500 Carya illinoinensis HOM05D005066 ORTHO05D006138 9.1e-169 597.0 352 78.7
Nn6g31745 Nelumbo nucifera HOM05D005066 ORTHO05D006138 1.7e-167 592.8 339 80.5
Oeu011330.2 Olea europaea HOM05D005066 ORTHO05D006138 5.0e-167 591.3 352 77.0
Dinv31933 Davidia involucrata HOM05D005066 ORTHO05D006138 1.1e-166 590.1 339 80.8
MD15G1002700 Malus domestica HOM05D005066 ORTHO05D006138 1.1e-166 590.1 352 77.0
Potri.005G249800 Populus trichocarpa HOM05D005066 ORTHO05D006138 1.5e-166 589.7 352 76.4
Cfa014063 Carpinus fangiana HOM05D005066 ORTHO05D006138 3.2e-166 588.6 352 77.3
Duzib093G2109 Durio zibethinus HOM05D005066 ORTHO05D006138 1.2e-165 586.6 352 76.1
PSO210G7270 Papaver somniferum HOM05D005066 ORTHO05D006138 1.6e-165 586.3 352 77.6
Eucgr.F03549 Eucalyptus grandis HOM05D005066 ORTHO05D006138 4.7e-165 584.7 352 74.4
PSO170G0128 Papaver somniferum HOM05D005066 ORTHO05D006138 4.7e-165 584.7 351 76.9
Cpa.g.sc26.207 Carica papaya HOM05D005066 ORTHO05D006138 6.1e-165 584.3 352 76.4
AL1G33470 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 1.2e-163 580.1 350 75.4
MSTRG.27774 Avicennia marina HOM05D005066 ORTHO05D006138 1.5e-163 579.7 350 74.3
Thecc.08G057800 Theobroma cacao HOM05D005066 ORTHO05D006138 1.5e-163 579.7 352 75.0
Migut.C00955 Erythranthe guttata HOM05D005066 ORTHO05D006138 2.0e-163 579.3 352 75.6
TWI36G1160 Tripterygium wilfordii HOM05D005066 ORTHO05D006138 3.4e-163 578.6 353 75.6
AT1G20540 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 5.7e-163 577.8 350 74.3
Gohir.A05G254700 Gossypium hirsutum HOM05D005066 ORTHO05D006138 5.7e-163 577.8 352 75.6
THA.LOC104813757 Tarenaya hassleriana HOM05D005066 ORTHO05D006138 4.8e-162 574.7 352 75.0
RcHm_v2.0_Chr6g0304181 Rosa chinensis HOM05D005066 ORTHO05D006138 8.3e-162 573.9 352 74.1
Thhalv10008062m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 1.1e-161 573.5 350 74.0
Ciclev10001617m.g Citrus clementina HOM05D005066 ORTHO05D006138 7.0e-161 570.9 361 74.0
Potri.002G011200 Populus trichocarpa HOM05D005066 ORTHO05D006138 9.1e-161 570.5 355 73.0
A06p16540 Brassica napus HOM05D005066 ORTHO05D006138 2.7e-160 568.9 350 73.7
BraA06t24760Z Brassica rapa HOM05D005066 ORTHO05D006138 2.7e-160 568.9 350 73.7
VMungo1309G2329 Vigna mungo HOM05D005066 ORTHO05D006138 2.7e-160 568.9 352 74.4
FAN20G0881 Fragaria x ananassa HOM05D005066 ORTHO05D006138 3.5e-160 568.5 352 73.9
PGR031G0259 Punica granatum HOM05D005066 ORTHO05D006138 3.5e-160 568.5 352 73.6
FvH4_2g37550 Fragaria vesca HOM05D005066 ORTHO05D006138 5.9e-160 567.8 352 73.6
Cc10_g00720 Coffea canephora HOM05D005066 ORTHO05D006138 7.7e-160 567.4 352 75.6
MD08G1003000 Malus domestica HOM05D005066 ORTHO05D006138 7.7e-160 567.4 352 74.1
Carub.0001s2001 Capsella rubella HOM05D005066 ORTHO05D006138 1.0e-159 567.0 350 73.1
Lalb_Chr23g0265821 Lupinus albus HOM05D005066 ORTHO05D006138 1.7e-159 566.2 352 73.9
Rhsim06G0007900 Rhododendron simsii HOM05D005066 ORTHO05D006138 2.9e-159 565.5 374 72.5
FAN15G0307 Fragaria x ananassa HOM05D005066 ORTHO05D006138 3.8e-159 565.1 352 73.3
Peaxi162Scf00893g00433 Petunia axillaris HOM05D005066 ORTHO05D006138 5.0e-159 564.7 352 75.0
Sp1g18250 Schrenkiella parvula HOM05D005066 ORTHO05D006138 8.5e-159 563.9 350 72.6
SGA_v2.0_scaffold108G30855 Striga asiatica HOM05D005066 ORTHO05D006138 8.5e-159 563.9 352 73.6
ATR0661G259 Amborella trichopoda HOM05D005066 ORTHO05D006138 1.5e-158 563.1 338 75.4
BcaB07g32052 Brassica carinata HOM05D005066 ORTHO05D006138 2.5e-158 562.4 350 73.1
CANSAT25G3513 Cannabis sativa HOM05D005066 ORTHO05D006138 2.5e-158 562.4 354 74.0
Aa31LG7G4800 Aethionema arabicum HOM05D005066 ORTHO05D006138 5.5e-158 561.2 352 73.6
Phvul.009G010100 Phaseolus vulgaris HOM05D005066 ORTHO05D006138 2.1e-157 559.3 352 73.0
DCAR_013911 Daucus carota HOM05D005066 ORTHO05D006138 2.7e-157 558.9 338 76.9
Gorai.009G267800 Gossypium raimondii HOM05D005066 ORTHO05D006138 3.6e-157 558.5 339 75.2
Ca_15439_v3 Cicer arietinum L. HOM05D005066 ORTHO05D006138 4.7e-157 558.1 352 73.3
Lj1g0027661 Lotus japonicus HOM05D005066 ORTHO05D006138 1.0e-156 557.0 352 72.7
Lsat_1_v5_gn_2_6481 Lactuca sativa HOM05D005066 ORTHO05D006138 1.8e-156 556.2 352 72.7
Lj4C805G13 Lonicera japonica HOM05D005066 ORTHO05D006138 4.0e-156 555.1 353 73.4
Solyc04g082300.2 Solanum lycopersicum HOM05D005066 ORTHO05D006138 1.5e-155 553.1 352 72.2
Sopen04g035920 Solanum pennellii HOM05D005066 ORTHO05D006138 1.5e-155 553.1 352 72.2
Glyma.06G018800 Glycine max HOM05D005066 ORTHO05D006138 2.0e-155 552.7 352 73.0
vmacro21822 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 2.0e-155 552.7 319 79.0
TPR.G38213 Trifolium pratense HOM05D005066 ORTHO05D006138 5.7e-155 551.2 352 72.4
Nitab4.5_0000588g0150 Nicotiana tabacum HOM05D005066 ORTHO05D006138 7.5e-155 550.8 340 75.6
PGSC0003DMG400009976 Solanum tuberosum HOM05D005066 ORTHO05D006138 7.5e-155 550.8 352 72.2
Sp5g31400 Schrenkiella parvula HOM05D005066 ORTHO05D006138 9.8e-155 550.4 352 72.2
BcaC08g47273 Brassica carinata HOM05D005066 ORTHO05D006138 1.7e-154 549.7 352 72.4
BolC6t40062H Brassica oleracea HOM05D005066 ORTHO05D006138 1.7e-154 549.7 352 72.4
CsaV3_6G031630 Cucumis sativus L. HOM05D005066 ORTHO05D006138 1.7e-154 549.7 351 72.6
Carub.0002s2315 Capsella rubella HOM05D005066 ORTHO05D006138 2.2e-154 549.3 352 73.0
Thhalv10018792m.g Eutrema salsugineum HOM05D005066 ORTHO05D006138 2.2e-154 549.3 352 72.2
HanXRQChr14g0428271 Helianthus annuus HOM05D005066 ORTHO05D006138 2.8e-154 548.9 350 72.6
arahy.Tifrunner.gnm1.ann1.B8YF15 Arachis hypogaea HOM05D005066 ORTHO05D006138 3.1e-153 545.4 339 73.5
AL2G36340 Arabidopsis lyrata HOM05D005066 ORTHO05D006138 4.1e-153 545.0 352 72.2
Aa31LG4G6350 Aethionema arabicum HOM05D005066 ORTHO05D006138 5.4e-153 544.7 352 71.9
ECA238G2025 Erigeron canadensis HOM05D005066 ORTHO05D006138 7.0e-153 544.3 352 71.0
arahy.Tifrunner.gnm1.ann1.76XKSK Arachis hypogaea HOM05D005066 ORTHO05D006138 9.1e-153 543.9 338 73.4
Medtr3g115200 Medicago truncatula HOM05D005066 ORTHO05D006138 7.7e-152 540.8 352 71.0
Os08g0554000 Oryza sativa ssp. japonica HOM05D005066 ORTHO05D006138 6.6e-151 537.7 353 69.1
unitig_26.g9893 Utricularia gibba HOM05D005066 ORTHO05D006138 1.5e-150 536.6 352 69.9
CANSAT54G1628 Cannabis sativa HOM05D005066 ORTHO05D006138 5.6e-150 534.6 355 70.7
FAN27G0843 Fragaria x ananassa HOM05D005066 ORTHO05D006138 1.6e-149 533.1 358 69.0
AUR62043922 Chenopodium quinoa HOM05D005066 ORTHO05D006138 3.0e-148 528.9 352 72.7
C06p50230 Brassica napus HOM05D005066 ORTHO05D006138 5.2e-148 528.1 352 70.2
COL.COLO4_03999 Corchorus olitorius HOM05D005066 ORTHO05D006138 2.0e-147 526.2 319 74.9
AT1G76260 Arabidopsis thaliana HOM05D005066 ORTHO05D006138 4.4e-147 525.0 352 70.7
BraA07t31713Z Brassica rapa HOM05D005066 ORTHO05D006138 4.4e-147 525.0 352 69.9
Hund05118 Selenicereus undatus HOM05D005066 ORTHO05D006138 1.3e-146 523.5 338 73.1
A07p41830 Brassica napus HOM05D005066 ORTHO05D006138 6.4e-146 521.2 352 69.6
Sed0022458 Sechium edule HOM05D005066 ORTHO05D006138 6.4e-146 521.2 351 69.8
SalBow7G4394 Salvia bowleyana HOM05D005066 ORTHO05D006138 1.1e-145 520.4 408 61.5
Zm00001eb039840 Zea mays HOM05D005066 ORTHO05D006138 3.5e-144 515.4 353 66.9
CARHR069820 Cardamine hirsuta HOM05D005066 ORTHO05D006138 4.6e-144 515.0 352 69.0
AUR62036885 Chenopodium quinoa HOM05D005066 ORTHO05D006138 6.6e-143 511.1 346 69.9
Glyma.04G018500 Glycine max HOM05D005066 ORTHO05D006138 1.8e-140 503.1 319 72.7
Zm00001eb180420 Zea mays HOM05D005066 ORTHO05D006138 1.2e-139 500.4 353 64.9
Sabra05G0193300 Salix brachista HOM05D005066 ORTHO05D006138 5.8e-139 498.0 383 62.7
TAR381G1664 Trochodendron aralioides HOM05D005066 ORTHO05D006138 2.0e-136 489.6 323 72.4
Sc15g0004490 Simmondsia chinensis HOM05D005066 ORTHO05D006138 2.8e-133 479.2 319 69.3
Gohir.D05G256300 Gossypium hirsutum HOM05D005066 ORTHO05D006138 1.1e-132 477.2 293 74.4
BcaC05g25960 Brassica carinata HOM05D005066 ORTHO05D006138 5.8e-131 471.5 295 71.9
C05p19110 Brassica napus HOM05D005066 ORTHO05D006138 9.8e-131 470.7 297 71.0
BolC5t30611H Brassica oleracea HOM05D005066 ORTHO05D006138 9.8e-131 470.7 297 71.0
EL10Ac1g01978 Beta vulgaris HOM05D005066 ORTHO05D006138 7.8e-128 461.1 296 71.3
BcaC08g47124 Brassica carinata HOM05D005066 ORTHO05D006138 3.3e-126 455.7 319 67.4
Ah.13g072510 Amaranthus hybridus HOM05D005066 ORTHO05D006138 1.9e-121 439.9 396 57.1
BNapus_Darmor_BZH_scaffold_170p00070 Brassica napus HOM05D005066 ORTHO05D006138 1.2e-120 437.2 307 65.5
CSS0013002 Camellia sinensis var. sinensis HOM05D005066 ORTHO05D006138 2.1e-117 426.4 353 60.9
Psat5g011560 Pisum sativum HOM05D005066 ORTHO05D006138 2.6e-115 419.5 269 70.3
QL02p013964 Quercus lobata HOM05D005066 ORTHO05D006138 1.3e-114 417.2 265 73.6
MELO3C026544.2 Cucumis melo HOM05D005066 ORTHO05D006138 1.1e-113 414.1 255 72.9
Haze_22764 Corylus avellana HOM05D005066 ORTHO05D006138 2.6e-99 366.3 223 75.8
HPP92_008373 Vanilla planifolia HOM05D005066 ORTHO05D006138 1.6e-93 347.1 230 67.0
AUR62043921 Chenopodium quinoa HOM05D005066 ORTHO05D006138 3.4e-91 339.3 201 77.6
Mapoly0054s0060 Marchantia polymorpha HOM05D005066 ORTHO05D006138 2.1e-88 330.1 358 45.5
Atru.chr13.151 Acer truncatum HOM05D005066 ORTHO05D006138 2.1e-85 320.1 180 80.6
AagrBONN_evm.TU.Sc2ySwM_362.948 Anthoceros agrestis HOM05D005066 ORTHO05D006138 3.7e-85 319.3 356 44.4
CARHR021010 Cardamine hirsuta HOM05D005066 ORTHO05D006138 2.0e-83 313.5 203 70.0
SMO118G0316 Selaginella moellendorffii HOM05D005066 ORTHO05D006138 6.5e-82 308.5 355 43.7
Actinidia29788 Actinidia chinensis HOM05D005066 ORTHO05D006138 2.6e-75 286.6 212 66.5
ClCG08G009490 Citrullus lanatus HOM05D005066 ORTHO05D006138 5.0e-66 255.8 158 70.9
MBI05_g41554_MAGBIO Magnolia biondii HOM05D005066 ORTHO05D006138 9.7e-62 241.5 129 90.7
SHI08001 Sapria himalayana HOM05D005066 ORTHO05D006138 1.6e-59 234.2 199 57.3
Cre02.g109400 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 8.2e-53 211.8 364 32.4
AUR62043554 Chenopodium quinoa HOM05D005066 ORTHO05D006138 1.2e-51 208.0 144 66.7
ClCG08G009550 Citrullus lanatus HOM05D005066 ORTHO05D006138 2.0e-46 190.7 126 72.2
CDE02G3878 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 1.3e-45 188.0 108 81.5
ClCG00G005440 Citrullus lanatus HOM05D005066 ORTHO05D006138 9.1e-44 181.8 126 64.3
Duzib116G0540 Durio zibethinus HOM05D005066 ORTHO05D006138 5.2e-39 166.0 118 66.1
QL02p013958 Quercus lobata HOM05D005066 ORTHO05D006138 1.7e-37 161.0 87 83.9
PRCOL_00000380 Prasinoderma coloniale HOM05D005066 ORTHO05D006138 3.6e-32 143.3 304 28.9
Haze_22758 Corylus avellana HOM05D005066 ORTHO05D006138 9.2e-28 128.6 76 78.9
SEGI_37952 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 2.3e-26 124.0 82 65.9
CDE04G2988 Ceratophyllum demersum HOM05D005066 ORTHO05D006138 3.9e-26 123.2 72 75.0
CBR_g17938 Chara braunii HOM05D005066 ORTHO05D006138 1.4e-23 114.8 216 31.0
vmacro11237 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.2e-19 101.7 69 66.7
vmacro11236 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 2.0e-19 100.9 70 65.7
MCO04G183 Micromonas commoda HOM05D005066 ORTHO05D006138 1.9e-17 94.4 366 25.1
SEGI_07968 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 1.6e-16 91.3 51 80.4
DCAR_013994 Daucus carota HOM05D000347 ORTHO05D001997 1.7e-13 81.3 284 21.8
Actinidia09068 Actinidia chinensis HOM05D005066 ORTHO05D006138 1.1e-12 78.6 54 70.4
Actinidia07458 Actinidia chinensis HOM05D005066 ORTHO05D006138 7.1e-12 75.9 44 75.0
arahy.Tifrunner.gnm1.ann1.FBZU85 Arachis hypogaea HOM05D005066 ORTHO05D006138 6.0e-11 72.8 146 32.2
vmacro21824 Vaccinium macrocarpon HOM05D004614 ORTHO05D005339 2.3e-10 70.9 47 68.1
A07p01270 Brassica napus HOM05D002302 ORTHO05D002728 2.5e-09 67.4 312 21.8
BraA07t27917Z Brassica rapa HOM05D002302 ORTHO05D002728 2.5e-09 67.4 312 21.8
BcaC06g36592 Brassica carinata HOM05D002302 ORTHO05D002728 3.3e-09 67.0 312 21.8
BcaB03g16740 Brassica carinata HOM05D002302 ORTHO05D002728 5.6e-09 66.2 312 21.8
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 9.5e-09 65.5 108 32.4
arahy.Tifrunner.gnm1.ann1.7RQ6TB Arachis hypogaea HOM05D005066 ORTHO05D006138 1.6e-08 64.7 56 44.6
Cre02.g109150 Chlamydomonas reinhardtii HOM05D005066 ORTHO05D006138 2.1e-08 64.3 68 38.2
Cfa025337 Carpinus fangiana HOM05D001978 ORTHO05D003036 2.8e-08 63.9 300 21.0
SMO347G0508 Selaginella moellendorffii HOM05D001978 ORTHO05D003036 3.6e-08 63.5 216 24.1
Zm00001eb165440 Zea mays HOM05D005151 ORTHO05D006322 4.7e-08 63.2 108 31.5
BcaC04g22846 Brassica carinata HOM05D002302 ORTHO05D002728 1.1e-07 62.0 312 20.5
C09p14700 Brassica napus HOM05D002302 ORTHO05D002728 1.1e-07 62.0 312 20.5
BolC9t54373H Brassica oleracea HOM05D002302 ORTHO05D002728 1.1e-07 62.0 312 20.5
SEGI_12583 Sequoiadendron giganteum HOM05D005066 ORTHO05D006138 1.4e-07 61.6 46 60.9
vmacro21823 Vaccinium macrocarpon HOM05D005066 ORTHO05D006138 1.4e-07 61.6 32 78.1
Os07g0657200 Oryza sativa ssp. japonica HOM05D001978 ORTHO05D003036 1.8e-07 61.2 273 19.8
A09p59290 Brassica napus HOM05D002302 ORTHO05D002728 3.1e-07 60.5 314 21.3
BraA09t41311Z Brassica rapa HOM05D002302 ORTHO05D002728 3.1e-07 60.5 314 21.3
Pp3c2_28090 Physcomitrium patens HOM05D005151 ORTHO05D006322 3.1e-07 60.5 128 26.6
Pp3c2_28110 Physcomitrium patens HOM05D005151 ORTHO05D006322 3.1e-07 60.5 128 26.6
Peaxi162Scf00011g00030 Petunia axillaris HOM05D000347 ORTHO05D001997 5.2e-07 59.7 194 22.2
ECA233G5892 Erigeron canadensis HOM05D000526 ORTHO05D000956 6.8e-07 59.3 192 20.3
SGA_v2.0_scaffold275G46594 Striga asiatica HOM05D005066 ORTHO05D406259 8.9e-07 58.9 34 64.7
Lsat_1_v5_gn_9_118141 Lactuca sativa HOM05D000347 ORTHO05D001997 1.2e-06 58.5 169 23.1
Nn4g22810 Nelumbo nucifera HOM05D005066 ORTHO05D006138 1.2e-06 58.5 41 61.0
Migut.N01033 Erythranthe guttata HOM05D000347 ORTHO05D001997 2.0e-06 57.8 284 18.7
Lj9A312G29 Lonicera japonica HOM05D000347 ORTHO05D001997 2.6e-06 57.4 119 26.1
BcaC04g19901 Brassica carinata HOM05D000347 ORTHO05D001997 3.4e-06 57.0 119 27.7
Lj9A311G56 Lonicera japonica HOM05D000347 ORTHO05D001997 3.4e-06 57.0 170 20.6
TWI23G0290 Tripterygium wilfordii HOM05D000347 ORTHO05D001997 3.4e-06 57.0 285 20.4
BcaB08g34870 Brassica carinata HOM05D002302 ORTHO05D002728 4.4e-06 56.6 312 20.5
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 4.4e-06 56.6 119 27.7
BolC9t57860H Brassica oleracea HOM05D000347 ORTHO05D001997 4.4e-06 56.6 119 27.7
Sp3g32900 Schrenkiella parvula HOM05D002302 ORTHO05D002728 4.4e-06 56.6 312 20.5
C08p42550 Brassica napus HOM05D002302 ORTHO05D002728 9.9e-06 55.5 314 20.7
BolC8t51816H Brassica oleracea HOM05D002302 ORTHO05D002728 9.9e-06 55.5 314 20.7


User provided reference genes

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