Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g41760_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 7.9e-169 597.0 305 100.0
CSS0020819 Camellia sinensis var. sinensis HOM05D003706 ORTHO05D004487 7.3e-90 334.7 233 73.8
Manes.02G042700 Manihot esculenta HOM05D003706 ORTHO05D004487 8.9e-88 327.8 237 71.7
QL12p009287 Quercus lobata HOM05D003706 ORTHO05D004487 2.0e-87 326.6 238 70.6
QL12p009718 Quercus lobata HOM05D003706 ORTHO05D004487 2.0e-87 326.6 238 70.2
Actinidia25892 Actinidia chinensis HOM05D003706 ORTHO05D004487 3.4e-87 325.9 237 71.7
Dinv21679 Davidia involucrata HOM05D003706 ORTHO05D004487 5.8e-87 325.1 237 70.5
Manes.01G085700 Manihot esculenta HOM05D003706 ORTHO05D004487 7.6e-87 324.7 236 71.6
Dinv28848 Davidia involucrata HOM05D003706 ORTHO05D004487 1.3e-86 323.9 237 71.3
Dinv39188 Davidia involucrata HOM05D003706 ORTHO05D004487 1.3e-86 323.9 237 71.3
Aqoxy3G02726 Aquilegia oxysepala HOM05D003706 ORTHO05D004487 2.2e-86 323.2 233 71.7
Thecc.03G244800 Theobroma cacao HOM05D003706 ORTHO05D004487 1.9e-85 320.1 235 70.2
Duzib068G0005 Durio zibethinus HOM05D003706 ORTHO05D004487 4.1e-85 318.9 237 69.6
TAR629G3078 Trochodendron aralioides HOM05D003706 ORTHO05D004487 9.2e-85 317.8 233 71.2
Glyma.05G063800 Glycine max HOM05D003706 ORTHO05D004487 2.7e-84 316.2 233 69.5
Prupe.5G061500 Prunus persica HOM05D003706 ORTHO05D004487 2.7e-84 316.2 235 70.6
GSVIVG01004795001 Vitis vinifera HOM05D003706 ORTHO05D004487 2.7e-84 316.2 235 68.5
COL.COLO4_10024 Corchorus olitorius HOM05D003706 ORTHO05D004487 3.5e-84 315.8 236 70.3
Eucgr.E00375 Eucalyptus grandis HOM05D003706 ORTHO05D004487 7.8e-84 314.7 236 69.9
Glyma.17G145500 Glycine max HOM05D003706 ORTHO05D004487 7.8e-84 314.7 233 69.1
Sed0008996 Sechium edule HOM05D003706 ORTHO05D004487 1.0e-83 314.3 233 70.0
arahy.Tifrunner.gnm1.ann1.JF7LYS Arachis hypogaea HOM05D003706 ORTHO05D004487 3.9e-83 312.4 246 65.4
arahy.Tifrunner.gnm1.ann1.MI1D26 Arachis hypogaea HOM05D003706 ORTHO05D004487 3.9e-83 312.4 246 65.4
MD04G1057500 Malus domestica HOM05D003706 ORTHO05D004487 6.6e-83 311.6 238 68.9
SGA_v2.0_scaffold104G30203 Striga asiatica HOM05D003706 ORTHO05D004487 6.6e-83 311.6 235 68.9
Gohir.D08G185500 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.1e-82 310.8 236 67.8
CiPaw.11G084300 Carya illinoinensis HOM05D003706 ORTHO05D004487 2.5e-82 309.7 239 66.5
RcHm_v2.0_Chr7g0204661 Rosa chinensis HOM05D003706 ORTHO05D004487 2.5e-82 309.7 234 68.8
Phvul.003G223748 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 3.3e-82 309.3 233 67.0
MD06G1051100 Malus domestica HOM05D003706 ORTHO05D004487 4.3e-82 308.9 239 67.8
arahy.Tifrunner.gnm1.ann1.P7CRZW Arachis hypogaea HOM05D003706 ORTHO05D004487 5.6e-82 308.5 233 66.5
TWI15G0458 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 9.6e-82 307.8 237 67.9
Gorai.004G194900 Gossypium raimondii HOM05D003706 ORTHO05D004487 1.2e-81 307.4 236 67.4
ClCG10G002430 Citrullus lanatus HOM05D003706 ORTHO05D004487 1.6e-81 307.0 230 69.6
Gohir.A08G166700 Gossypium hirsutum HOM05D003706 ORTHO05D004487 1.6e-81 307.0 236 66.9
THA.LOC104813337 Tarenaya hassleriana HOM05D003706 ORTHO05D004487 1.6e-81 307.0 237 65.8
Atru.chr9.1245 Acer truncatum HOM05D003706 ORTHO05D004487 2.1e-81 306.6 235 68.1
arahy.Tifrunner.gnm1.ann1.PS7EZR Arachis hypogaea HOM05D003706 ORTHO05D004487 2.1e-81 306.6 233 66.5
Lalb_Chr05g0221021 Lupinus albus HOM05D003706 ORTHO05D004487 2.1e-81 306.6 233 66.1
CANSAT21G1120 Cannabis sativa HOM05D003706 ORTHO05D004487 3.6e-81 305.8 233 67.4
Gohir.A12G214200 Gossypium hirsutum HOM05D003706 ORTHO05D004487 3.6e-81 305.8 231 68.8
PSO782G4370 Papaver somniferum HOM05D003706 ORTHO05D004487 3.6e-81 305.8 238 66.8
Potri.003G081000 Populus trichocarpa HOM05D003706 ORTHO05D004487 4.7e-81 305.4 233 68.2
Hma1.2p1_0821F.1_g224200 Hydrangea macrophylla HOM05D003706 ORTHO05D004487 6.2e-81 305.1 235 67.7
PGR042G3774 Punica granatum HOM05D003706 ORTHO05D004487 6.2e-81 305.1 234 66.2
Lalb_Chr16g0386511 Lupinus albus HOM05D003706 ORTHO05D004487 8.1e-81 304.7 233 66.1
FAN08G3606 Fragaria x ananassa HOM05D003706 ORTHO05D004487 1.1e-80 304.3 260 62.3
Oeu040685.1 Olea europaea HOM05D003706 ORTHO05D004487 1.4e-80 303.9 235 68.1
Gohir.D12G216800 Gossypium hirsutum HOM05D003706 ORTHO05D004487 3.1e-80 302.8 229 69.0
Gorai.008G232400 Gossypium raimondii HOM05D003706 ORTHO05D004487 3.1e-80 302.8 229 69.0
Sabra03G0052000 Salix brachista HOM05D003706 ORTHO05D004487 5.2e-80 302.0 233 67.8
Migut.A01026 Erythranthe guttata HOM05D003706 ORTHO05D004487 6.9e-80 301.6 233 67.4
Glyma.01G206200 Glycine max HOM05D003706 ORTHO05D004487 6.9e-80 301.6 228 67.5
Ca_21985_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 8.9e-80 301.2 230 67.4
Ca_21998_v3 Cicer arietinum L. HOM05D003706 ORTHO05D004487 8.9e-80 301.2 230 67.4
Duzib084G0672 Durio zibethinus HOM05D003706 ORTHO05D004487 8.9e-80 301.2 235 66.8
FAN04G0187 Fragaria x ananassa HOM05D003706 ORTHO05D004487 1.2e-79 300.8 228 68.0
CAN.G1856.6 Capsicum annuum HOM05D003706 ORTHO05D004487 1.5e-79 300.4 236 65.3
FvH4_5g19870 Fragaria vesca HOM05D003706 ORTHO05D004487 1.5e-79 300.4 228 68.0
VMungo0251G2656 Vigna mungo HOM05D003706 ORTHO05D004487 2.6e-79 299.7 233 67.4
Lj4g0012322 Lotus japonicus HOM05D003706 ORTHO05D004487 3.4e-79 299.3 233 66.1
Lalb_Chr05g0214291 Lupinus albus HOM05D003706 ORTHO05D004487 3.4e-79 299.3 229 65.1
Peaxi162Scf00190g01214 Petunia axillaris HOM05D003706 ORTHO05D004487 3.4e-79 299.3 234 65.0
Nn1g00853 Nelumbo nucifera HOM05D003706 ORTHO05D004487 5.8e-79 298.5 223 73.1
Ciclev10023537m.g Citrus clementina HOM05D003706 ORTHO05D004487 9.9e-79 297.7 233 67.0
Aa31LG6G250 Aethionema arabicum HOM05D003706 ORTHO05D004487 1.3e-78 297.4 232 67.2
Psat4g074200 Pisum sativum HOM05D003706 ORTHO05D004487 1.3e-78 297.4 230 66.5
Nitab4.5_0006805g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.7e-78 297.0 232 65.1
Peaxi162Scf00260g00418 Petunia axillaris HOM05D003706 ORTHO05D004487 3.8e-78 295.8 237 66.7
DCAR_000641 Daucus carota HOM05D003706 ORTHO05D004487 4.9e-78 295.4 234 65.0
CiPaw.12G048600 Carya illinoinensis HOM05D003706 ORTHO05D004487 8.4e-78 294.7 220 71.4
Thhalv10026137m.g Eutrema salsugineum HOM05D003706 ORTHO05D004487 8.4e-78 294.7 233 66.1
Phvul.002G000300 Phaseolus vulgaris HOM05D003706 ORTHO05D004487 1.9e-77 293.5 228 67.1
vmacro00025 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 1.9e-77 293.5 232 67.2
Ah.07g198590 Amaranthus hybridus HOM05D003706 ORTHO05D004487 2.4e-77 293.1 233 65.7
Solyc08g078140.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 2.4e-77 293.1 230 64.3
Medtr4g100360 Medicago truncatula HOM05D003706 ORTHO05D004487 3.2e-77 292.7 230 65.7
Nitab4.5_0002206g0070 Nicotiana tabacum HOM05D003706 ORTHO05D004487 3.2e-77 292.7 232 63.8
AT4G17510 Arabidopsis thaliana HOM05D003706 ORTHO05D004487 4.2e-77 292.4 231 66.7
PGSC0003DMG400026229 Solanum tuberosum HOM05D003706 ORTHO05D004487 4.2e-77 292.4 230 64.3
CARHR224210 Cardamine hirsuta HOM05D003706 ORTHO05D004487 5.4e-77 292.0 233 65.7
A01p09590 Brassica napus HOM05D003706 ORTHO05D004487 2.1e-76 290.0 231 65.4
BraA01t00901Z Brassica rapa HOM05D003706 ORTHO05D004487 2.1e-76 290.0 231 65.4
AUR62007134 Chenopodium quinoa HOM05D003706 ORTHO05D004487 2.1e-76 290.0 233 65.2
Sp7g16650 Schrenkiella parvula HOM05D003706 ORTHO05D004487 2.1e-76 290.0 233 65.7
TPR.G10445 Trifolium pratense HOM05D003706 ORTHO05D004487 2.1e-76 290.0 226 65.5
Ciclev10022039m.g Citrus clementina HOM05D003706 ORTHO05D004487 2.7e-76 289.7 233 66.5
AL7G37120 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 3.5e-76 289.3 231 66.7
PGSC0003DMG400024158 Solanum tuberosum HOM05D003706 ORTHO05D004487 3.5e-76 289.3 233 61.8
SalBow7G0213 Salvia bowleyana HOM05D003706 ORTHO05D004487 4.6e-76 288.9 233 64.4
BcaNung00085 Brassica carinata HOM05D003706 ORTHO05D004487 6.0e-76 288.5 231 64.9
HanXRQChr16g0511641 Helianthus annuus HOM05D003706 ORTHO05D004487 6.0e-76 288.5 234 62.8
BcaNung03459 Brassica carinata HOM05D003706 ORTHO05D004487 7.8e-76 288.1 232 64.7
Sopen06g021000 Solanum pennellii HOM05D003706 ORTHO05D004487 7.8e-76 288.1 233 61.8
Carub.0007s2389 Capsella rubella HOM05D003706 ORTHO05D004487 1.0e-75 287.7 231 65.4
BcaC09g51635 Brassica carinata HOM05D003706 ORTHO05D004487 1.7e-75 287.0 231 64.5
BolC1t01081H Brassica oleracea HOM05D003706 ORTHO05D004487 1.7e-75 287.0 231 64.5
MSTRG.12138 Avicennia marina HOM05D003706 ORTHO05D004487 2.3e-75 286.6 233 64.4
Lj2C226G3 Lonicera japonica HOM05D003706 ORTHO05D004487 3.0e-75 286.2 232 65.5
Solyc06g060850.3 Solanum lycopersicum HOM05D003706 ORTHO05D004487 3.0e-75 286.2 233 61.4
C07p48810 Brassica napus HOM05D003706 ORTHO05D004487 5.1e-75 285.4 233 62.7
BolC7t45389H Brassica oleracea HOM05D003706 ORTHO05D004487 5.1e-75 285.4 233 62.7
Haze_07960 Corylus avellana HOM05D003706 ORTHO05D004487 5.1e-75 285.4 315 53.7
Lsat_1_v5_gn_9_30321 Lactuca sativa HOM05D003706 ORTHO05D004487 5.1e-75 285.4 235 62.1
A03p50490 Brassica napus HOM05D003706 ORTHO05D004487 6.6e-75 285.0 233 62.7
DCAR_004606 Daucus carota HOM05D003706 ORTHO05D004487 6.6e-75 285.0 230 63.0
C01p11160 Brassica napus HOM05D003706 ORTHO05D004487 8.7e-75 284.6 231 64.5
CAN.G62.15 Capsicum annuum HOM05D003706 ORTHO05D004487 8.7e-75 284.6 231 62.8
HPP92_002099 Vanilla planifolia HOM05D003706 ORTHO05D004487 8.7e-75 284.6 230 63.5
BraA03t14138Z Brassica rapa HOM05D003706 ORTHO05D004487 1.9e-74 283.5 233 62.2
AL7G37110 Arabidopsis lyrata HOM05D003706 ORTHO05D004487 4.3e-74 282.3 233 62.2
EL10Ac5g12313 Beta vulgaris HOM05D003706 ORTHO05D004487 1.6e-73 280.4 262 58.8
Carub.0007s2388 Capsella rubella HOM05D003706 ORTHO05D004487 2.8e-73 279.6 233 61.8
Cc08_g11880 Coffea canephora HOM05D003706 ORTHO05D004487 3.6e-73 279.3 234 62.4
ATR0057G038 Amborella trichopoda HOM05D003706 ORTHO05D004487 4.8e-73 278.9 218 67.0
ECA240G2285 Erigeron canadensis HOM05D003706 ORTHO05D004487 6.2e-73 278.5 228 62.3
CDE11G0530 Ceratophyllum demersum HOM05D003706 ORTHO05D004487 4.0e-72 275.8 224 63.8
Cfa012680 Carpinus fangiana HOM05D003706 ORTHO05D004487 5.3e-72 275.4 232 64.2
CsaV3_3G002450 Cucumis sativus L. HOM05D003706 ORTHO05D004487 5.8e-71 271.9 211 67.8
SGA_v2.0_scaffold199G41234 Striga asiatica HOM05D003706 ORTHO05D004487 7.6e-71 271.6 248 58.5
Lalb_Chr00c24g0407441 Lupinus albus HOM05D003706 ORTHO05D004487 1.7e-70 270.4 211 65.4
Sc22g0001060 Simmondsia chinensis HOM05D003706 ORTHO05D004487 6.4e-70 268.5 221 66.1
TAR636G2892 Trochodendron aralioides HOM05D003706 ORTHO05D004487 7.1e-69 265.0 164 81.1
TPR.G4685 Trifolium pratense HOM05D003706 ORTHO05D004487 9.3e-69 264.6 212 65.1
VMungo1215G2603 Vigna mungo HOM05D003706 ORTHO05D004487 1.6e-68 263.8 258 56.6
Nitab4.5_0000618g0150 Nicotiana tabacum HOM05D003706 ORTHO05D004487 2.7e-68 263.1 204 65.2
Os02g0654500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 6.0e-68 261.9 227 56.8
Rhsim02G0172600 Rhododendron simsii HOM05D003480 ORTHO05D004487 5.1e-67 258.8 212 65.6
Hund14510 Selenicereus undatus HOM05D003706 ORTHO05D004487 2.8e-65 253.1 230 61.7
Lalb_Chr00c54g0413631 Lupinus albus HOM05D003706 ORTHO05D004487 3.7e-65 252.7 251 54.6
HPP92_014688 Vanilla planifolia HOM05D003706 ORTHO05D004487 4.8e-65 252.3 226 58.4
FAN13G2930 Fragaria x ananassa HOM05D003706 ORTHO05D004487 8.1e-65 251.5 220 60.9
PSO063G5263 Papaver somniferum HOM05D003706 ORTHO05D004487 8.1e-65 251.5 164 76.2
Zm00001eb427920 Zea mays HOM05D003706 ORTHO05D004487 8.1e-65 251.5 228 59.2
Mapoly0021s0071 Marchantia polymorpha HOM05D003706 ORTHO05D004487 1.4e-64 250.8 229 60.7
SMO364G0877 Selaginella moellendorffii HOM05D003706 ORTHO05D004487 1.8e-64 250.4 241 58.9
Zm00001eb249260 Zea mays HOM05D003706 ORTHO05D004487 2.0e-63 246.9 231 55.0
unitig_0.g1053 Utricularia gibba HOM05D003706 ORTHO05D004487 7.6e-63 245.0 229 58.5
AUR62018878 Chenopodium quinoa HOM05D003706 ORTHO05D004487 1.9e-61 240.4 225 57.8
Cpa.g.sc89.37 Carica papaya HOM05D003706 ORTHO05D004487 4.2e-61 239.2 162 69.8
FAN18G2986 Fragaria x ananassa HOM05D003706 ORTHO05D004487 1.6e-60 237.3 159 73.6
Pp3c3_8410 Physcomitrium patens HOM05D003706 ORTHO05D004487 3.0e-59 233.0 229 56.8
CBR_g30854 Chara braunii HOM05D003706 ORTHO05D004487 1.1e-58 231.1 228 58.8
AagrBONN_evm.TU.Sc2ySwM_368.2205 Anthoceros agrestis HOM05D003706 ORTHO05D004487 2.5e-58 229.9 209 59.3
Nitab4.5_0009301g0040 Nicotiana tabacum HOM05D003706 ORTHO05D004487 1.3e-57 227.6 164 70.1
vmacro00024 Vaccinium macrocarpon HOM05D003706 ORTHO05D004487 1.3e-57 227.6 209 57.4
Oeu031158.1 Olea europaea HOM05D003706 ORTHO05D004487 1.8e-56 223.8 168 67.3
VMungo0251G2614 Vigna mungo HOM05D003706 ORTHO05D006202 2.6e-55 219.9 201 59.7
Ciclev10024619m.g Citrus clementina HOM05D003706 ORTHO05D004487 2.2e-54 216.9 185 64.9
Zm00001eb186330 Zea mays HOM05D003706 ORTHO05D004487 9.3e-53 211.5 160 62.5
MELO3C013914.2 Cucumis melo HOM05D003706 ORTHO05D004487 6.0e-52 208.8 138 73.2
Zm00001eb433120 Zea mays HOM05D003706 ORTHO05D004487 6.7e-51 205.3 228 49.1
arahy.Tifrunner.gnm1.ann1.FUBR3I Arachis hypogaea HOM05D003706 ORTHO05D004487 5.9e-47 192.2 166 57.2
Cc11_g04870 Coffea canephora HOM05D003706 ORTHO05D004487 2.2e-46 190.3 186 56.5
BcaC06g33562 Brassica carinata HOM05D003706 ORTHO05D004487 8.2e-41 171.8 119 71.4
MCO01G147 Micromonas commoda HOM05D003706 ORTHO05D004487 8.2e-41 171.8 240 43.3
Cre03.g194250 Chlamydomonas reinhardtii HOM05D003706 ORTHO05D004487 1.7e-38 164.1 232 38.4
BcaC06g33564 Brassica carinata HOM05D003706 ORTHO05D004487 4.6e-36 156.0 155 58.7
SHI07667 Sapria himalayana HOM05D003706 ORTHO05D004487 2.0e-34 150.6 177 48.0
Actinidia02181 Actinidia chinensis HOM05D003706 ORTHO05D004487 1.0e-30 138.3 98 70.4
PRCOL_00002923 Prasinoderma coloniale HOM05D003706 ORTHO05D004487 1.8e-24 117.5 242 36.8
Actinidia02180 Actinidia chinensis HOM05D003706 ORTHO05D004487 3.1e-24 116.7 103 63.1
Sopen08g026640 Solanum pennellii HOM05D003706 ORTHO05D004487 3.1e-24 116.7 102 60.8
TWI15G0745 Tripterygium wilfordii HOM05D003706 ORTHO05D004487 5.9e-23 112.5 75 69.3
Sopen08g026630 Solanum pennellii HOM05D003706 ORTHO05D004487 5.0e-22 109.4 71 67.6
Cc01_g05720 Coffea canephora HOM05D003706 ORTHO05D004487 1.5e-21 107.8 73 72.6
arahy.Tifrunner.gnm1.ann1.77EYCF Arachis hypogaea HOM05D003706 ORTHO05D004487 1.6e-20 104.4 66 68.2
MBI04_g33725_MAGBIO Magnolia biondii HOM05D003706 ORTHO05D004487 1.6e-20 104.4 48 97.9
Zm00001eb389020 Zea mays HOM05D003706 ORTHO05D004487 9.7e-18 95.1 95 56.8
Zm00001eb146790 Zea mays HOM05D005629 ORTHO05D003607 1.7e-17 94.4 128 46.9
Cc00_g03590 Coffea canephora HOM05D003706 ORTHO05D004487 6.3e-17 92.4 178 36.0
Zm00001eb389030 Zea mays HOM05D003706 ORTHO05D004487 4.1e-16 89.7 86 58.1
Zm00001eb296140 Zea mays HOM05D003706 ORTHO05D004487 7.0e-16 89.0 86 58.1
C07p48160 Brassica napus HOM05D003706 ORTHO05D004487 3.5e-15 86.7 159 37.1
Os04g0667500 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 2.9e-14 83.6 55 63.6
arahy.Tifrunner.gnm1.ann1.CH87W6 Arachis hypogaea HOM05D003706 ORTHO05D004487 9.4e-13 78.6 119 39.5
RcHm_v2.0_Chr7g0214021 Rosa chinensis HOM05D003706 ORTHO05D004487 8.8e-11 72.0 46 71.7
TAR375G0973 Trochodendron aralioides HOM05D003706 ORTHO05D004487 2.0e-10 70.9 44 75.0
Cfa022867 Carpinus fangiana HOM05D004513 ORTHO05D005459 1.8e-08 64.3 243 27.6
SEGI_34669 Sequoiadendron giganteum HOM05D003706 ORTHO05D004487 4.1e-08 63.2 57 59.6
Os04g0546400 Oryza sativa ssp. japonica HOM05D003706 ORTHO05D004487 2.3e-06 57.4 63 50.8
EL10Ac5g12923 Beta vulgaris HOM05D004513 ORTHO05D005459 6.5e-06 55.8 229 24.9
arahy.Tifrunner.gnm1.ann1.5G37N1 Arachis hypogaea HOM05D003706 ORTHO05D031576 8.6e-06 55.5 29 86.2
unitig_747.g21436 Utricularia gibba HOM05D004513 ORTHO05D005459 8.6e-06 55.5 229 24.9


User provided reference genes

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