Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 7.9e-58 227.3 147 100.0
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 1.5e-45 186.4 148 85.1
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 2.6e-40 169.1 148 78.4
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 4.4e-40 168.3 148 78.4
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 3.7e-39 165.2 148 77.0
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 7.7e-37 157.5 148 72.3
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 2.5e-35 152.5 143 73.4
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 6.7e-33 144.4 141 63.8
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 1.5e-32 143.3 138 70.3
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 2.0e-32 142.9 138 69.6
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 2.6e-32 142.5 141 68.1
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 7.5e-32 141.0 138 71.0
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 9.7e-32 140.6 141 69.5
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 1.7e-31 139.8 138 71.0
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 2.2e-31 139.4 137 71.5
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 2.8e-31 139.0 136 70.6
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 3.7e-31 138.7 134 67.9
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 4.8e-31 138.3 144 66.7
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 1.8e-30 136.3 137 66.4
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 1.8e-30 136.3 137 68.6
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 1.8e-30 136.3 137 69.3
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 2.4e-30 136.0 140 70.7
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 3.1e-30 135.6 126 72.2
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 3.1e-30 135.6 144 66.0
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 5.3e-30 134.8 131 68.7
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 5.3e-30 134.8 137 65.7
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 5.3e-30 134.8 139 69.8
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 7.0e-30 134.4 126 70.6
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 9.1e-30 134.0 131 58.0
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 9.1e-30 134.0 136 69.1
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 9.1e-30 134.0 143 70.6
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 1.2e-29 133.7 136 69.9
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 1.2e-29 133.7 137 67.9
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 1.2e-29 133.7 136 58.8
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 1.6e-29 133.3 139 57.6
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.6e-29 133.3 143 69.9
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 2.0e-29 132.9 136 68.4
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 2.7e-29 132.5 132 68.2
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 2.7e-29 132.5 139 66.2
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 4.5e-29 131.7 122 76.2
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 4.5e-29 131.7 129 72.1
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 5.9e-29 131.3 137 66.4
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 5.9e-29 131.3 139 69.1
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 1.0e-28 130.6 133 66.9
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 1.0e-28 130.6 140 52.1
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 1.3e-28 130.2 119 74.8
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 1.7e-28 129.8 131 69.5
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 1.7e-28 129.8 137 65.0
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 2.2e-28 129.4 138 44.2
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 2.2e-28 129.4 129 70.5
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 2.9e-28 129.0 140 67.1
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 2.9e-28 129.0 131 67.9
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 2.9e-28 129.0 131 67.2
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 5.0e-28 128.3 135 67.4
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 8.5e-28 127.5 121 72.7
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 1.9e-27 126.3 130 65.4
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 3.2e-27 125.6 77 70.1
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 4.2e-27 125.2 123 71.5
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 1.6e-26 123.2 118 72.9
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 2.1e-26 122.9 138 63.0
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 2.1e-26 122.9 89 61.8
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 3.6e-26 122.1 137 65.7
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 3.6e-26 122.1 135 62.2
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 4.7e-26 121.7 132 63.6
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 8.0e-26 120.9 135 60.0
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 1.0e-25 120.6 81 61.7
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 1.8e-25 119.8 127 66.9
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.8e-25 119.8 131 63.4
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 1.8e-25 119.8 131 63.4
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 3.0e-25 119.0 130 67.7
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 3.0e-25 119.0 132 62.1
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 4.0e-25 118.6 88 61.4
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 4.0e-25 118.6 134 56.7
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 5.2e-25 118.2 132 60.6
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 5.2e-25 118.2 132 65.9
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 8.8e-25 117.5 113 73.5
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 8.8e-25 117.5 132 61.4
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 1.2e-24 117.1 131 65.6
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 1.2e-24 117.1 126 65.1
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 2.6e-24 115.9 130 62.3
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 7.5e-24 114.4 137 55.5
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 9.8e-24 114.0 131 61.8
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 2.2e-23 112.8 120 45.0
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 2.2e-23 112.8 131 61.1
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 2.8e-23 112.5 135 58.5
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 3.7e-23 112.1 130 58.5
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 4.8e-23 111.7 131 60.3
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 4.8e-23 111.7 131 60.3
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 6.3e-23 111.3 136 58.1
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 6.3e-23 111.3 133 57.9
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 6.3e-23 111.3 131 60.3
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 8.3e-23 110.9 131 59.5
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 1.4e-22 110.2 132 56.8
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 2.4e-22 109.4 132 59.1
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 3.1e-22 109.0 135 41.5
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 4.1e-22 108.6 131 57.3
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 5.4e-22 108.2 130 60.8
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 9.1e-22 107.5 132 56.8
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 9.1e-22 107.5 132 56.8
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 9.1e-22 107.5 131 56.5
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 1.6e-21 106.7 131 55.7
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 5.9e-21 104.8 124 60.5
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 7.7e-21 104.4 135 51.1
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 1.3e-20 103.6 131 55.0
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 1.7e-20 103.2 110 44.5
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 1.9e-19 99.8 77 50.6
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 2.5e-19 99.4 142 53.5
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 3.3e-19 99.0 136 37.5
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 1.2e-18 97.1 105 72.4
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 8.0e-18 94.4 128 57.8
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 1.8e-17 93.2 123 52.8
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 2.0e-16 89.7 102 70.6
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 2.6e-16 89.4 133 44.4
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 5.7e-16 88.2 96 63.5
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 8.3e-15 84.3 135 51.1
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 1.6e-13 80.1 118 37.3
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 1.6e-13 80.1 118 37.3
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 2.7e-13 79.3 118 37.3
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 2.7e-13 79.3 118 37.3
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 2.7e-13 79.3 118 37.3
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 7.8e-13 77.8 156 35.3
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 1.0e-12 77.4 118 36.4
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 1.0e-12 77.4 65 49.2
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 3.3e-11 72.4 99 36.4
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 1.2e-10 70.5 119 33.6
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 2.8e-10 69.3 58 50.0
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 3.6e-10 68.9 125 47.2
SEGI_19463 Sequoiadendron giganteum HOM05D004231 ORTHO05D004814 2.3e-09 66.2 97 51.5
Hma1.2p1_0384F.1_g141150 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 4.9e-07 58.5 73 39.7


User provided reference genes

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