Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MBI01_g14098_MAGBIO Magnolia biondii HOM05D047079 ORTHO05D048577 1.6e-109 399.4 207 100.0
MBI13_g13899_MAGBIO Magnolia biondii HOM05D047079 ORTHO05D048577 1.5e-30 137.1 194 48.5
Zm00001eb229250 Zea mays HOM05D000212 ORTHO05D005509 6.8e-15 85.1 91 52.7
Oeu005702.1 Olea europaea HOM05D000212 ORTHO05D005509 1.5e-14 84.0 91 50.5
Os02g0101500 Oryza sativa ssp. japonica HOM05D000212 ORTHO05D005509 7.6e-14 81.6 91 50.5
SalBow7G0649 Salvia bowleyana HOM05D000212 ORTHO05D005509 2.2e-13 80.1 91 48.4
SalBow7G2155 Salvia bowleyana HOM05D000212 ORTHO05D005509 2.2e-13 80.1 91 48.4
Cc09_g10170 Coffea canephora HOM05D000212 ORTHO05D005509 2.9e-13 79.7 91 50.5
Prupe.8G166000 Prunus persica HOM05D000212 ORTHO05D005509 2.9e-13 79.7 91 48.4
unitig_899.g15611 Utricularia gibba HOM05D000212 ORTHO05D005509 2.9e-13 79.7 91 48.4
Cfa005249 Carpinus fangiana HOM05D000212 ORTHO05D005509 3.8e-13 79.3 91 48.4
Prupe.7G264000 Prunus persica HOM05D000212 ORTHO05D005509 6.4e-13 78.6 91 47.3
MSTRG.5454 Avicennia marina HOM05D000212 ORTHO05D005509 8.4e-13 78.2 91 46.2
Cpa.g.sc20.87 Carica papaya HOM05D000212 ORTHO05D005509 8.4e-13 78.2 91 47.3
Dinv41936 Davidia involucrata HOM05D000212 ORTHO05D005509 8.4e-13 78.2 91 47.3
MD05G1122100 Malus domestica HOM05D000212 ORTHO05D005509 8.4e-13 78.2 91 47.3
Thecc.02G059100 Theobroma cacao HOM05D000212 ORTHO05D005509 8.4e-13 78.2 91 47.3
TAR381G1304 Trochodendron aralioides HOM05D000212 ORTHO05D005509 1.1e-12 77.8 91 48.4
CiPaw.05G082600 Carya illinoinensis HOM05D000212 ORTHO05D005509 1.4e-12 77.4 91 47.3
Haze_02134 Corylus avellana HOM05D000212 ORTHO05D005509 1.4e-12 77.4 91 47.3
Eucgr.I01423 Eucalyptus grandis HOM05D000212 ORTHO05D005509 1.4e-12 77.4 91 47.3
CDE04G1730 Ceratophyllum demersum HOM05D000212 ORTHO05D005509 1.9e-12 77.0 91 47.3
Ciclev10028639m.g Citrus clementina HOM05D000212 ORTHO05D005509 1.9e-12 77.0 91 46.2
Gohir.D01G160100 Gossypium hirsutum HOM05D000212 ORTHO05D005509 1.9e-12 77.0 91 46.2
Gorai.002G198600 Gossypium raimondii HOM05D000212 ORTHO05D005509 1.9e-12 77.0 91 46.2
Manes.04G076300 Manihot esculenta HOM05D000212 ORTHO05D005509 1.9e-12 77.0 91 46.2
PSO675G7560 Papaver somniferum HOM05D000212 ORTHO05D005509 1.9e-12 77.0 91 47.3
Potri.004G175800 Populus trichocarpa HOM05D000212 ORTHO05D005509 1.9e-12 77.0 91 46.2
Hund00191 Selenicereus undatus HOM05D000212 ORTHO05D005509 1.9e-12 77.0 91 46.2
Aqoxy6G02140 Aquilegia oxysepala HOM05D000212 ORTHO05D005509 2.4e-12 76.6 91 47.3
Glyma.10G281400 Glycine max HOM05D000212 ORTHO05D005509 2.4e-12 76.6 91 45.1
Gohir.A01G169100 Gossypium hirsutum HOM05D000212 ORTHO05D005509 2.4e-12 76.6 91 46.2
Duzib132G0804 Durio zibethinus HOM05D000212 ORTHO05D005509 3.2e-12 76.3 91 46.2
Lalb_Chr21g0306931 Lupinus albus HOM05D000212 ORTHO05D005509 3.2e-12 76.3 91 45.1
RcHm_v2.0_Chr7g0224761 Rosa chinensis HOM05D000212 ORTHO05D005509 3.2e-12 76.3 91 46.2
Thhalv10018534m.g Eutrema salsugineum HOM05D000212 ORTHO05D005509 4.2e-12 75.9 91 45.1
FvH4_5g30340 Fragaria vesca HOM05D000212 ORTHO05D005509 4.2e-12 75.9 91 46.2
FAN18G0770 Fragaria x ananassa HOM05D000212 ORTHO05D005509 4.2e-12 75.9 91 46.2
Hma1.2p1_0163F.1_g072510 Hydrangea macrophylla HOM05D000212 ORTHO05D005509 4.2e-12 75.9 91 45.1
Nn5g30798 Nelumbo nucifera HOM05D000212 ORTHO05D005509 4.2e-12 75.9 91 46.2
Sp5g23030 Schrenkiella parvula HOM05D000212 ORTHO05D005509 4.2e-12 75.9 91 45.1
TWI79G0672 Tripterygium wilfordii HOM05D000212 ORTHO05D005509 4.2e-12 75.9 91 45.1
CDE02G3685 Ceratophyllum demersum HOM05D000212 ORTHO05D005509 5.4e-12 75.5 91 46.2
PSO541G1525 Papaver somniferum HOM05D000212 ORTHO05D005509 5.4e-12 75.5 91 46.2
Solyc01g111630.3 Solanum lycopersicum HOM05D000212 ORTHO05D005509 5.4e-12 75.5 91 45.1
Sopen01g053670 Solanum pennellii HOM05D000212 ORTHO05D005509 5.4e-12 75.5 91 45.1
PGSC0003DMG400006186 Solanum tuberosum HOM05D000212 ORTHO05D005509 5.4e-12 75.5 91 45.1
TPR.G36351 Trifolium pratense HOM05D000212 ORTHO05D005509 5.4e-12 75.5 91 45.1
PGR142G1333 Punica granatum HOM05D000212 ORTHO05D005509 7.1e-12 75.1 91 44.0
SMO145G0129 Selaginella moellendorffii HOM05D000212 ORTHO05D005509 7.1e-12 75.1 91 47.3
GSVIVG01024012001 Vitis vinifera HOM05D000212 ORTHO05D005509 7.1e-12 75.1 91 45.1
Actinidia21457 Actinidia chinensis HOM05D000212 ORTHO05D005509 9.2e-12 74.7 91 45.1
Ca_11207_v3 Cicer arietinum L. HOM05D000212 ORTHO05D005509 9.2e-12 74.7 91 44.0
DCAR_022947 Daucus carota HOM05D000212 ORTHO05D005509 9.2e-12 74.7 91 45.1
Peaxi162Scf00362g00646 Petunia axillaris HOM05D000212 ORTHO05D005509 9.2e-12 74.7 91 50.5
AL2G26910 Arabidopsis lyrata HOM05D000212 ORTHO05D005509 1.2e-11 74.3 91 44.0
AT1G68010 Arabidopsis thaliana HOM05D000212 ORTHO05D005509 1.2e-11 74.3 91 44.0
BcaB03g15139 Brassica carinata HOM05D000212 ORTHO05D005509 1.2e-11 74.3 91 44.0
BcaB03g15394 Brassica carinata HOM05D000212 ORTHO05D005509 1.2e-11 74.3 91 44.0
BcaC08g46227 Brassica carinata HOM05D000212 ORTHO05D005509 1.2e-11 74.3 91 44.0
BcaNung05109 Brassica carinata HOM05D000212 ORTHO05D005509 1.2e-11 74.3 91 44.0
A07p34520 Brassica napus HOM05D000212 ORTHO05D005509 1.2e-11 74.3 91 44.0
C06p42000 Brassica napus HOM05D000573 ORTHO05D005509 1.2e-11 74.3 91 44.0
BolC6t39228H Brassica oleracea HOM05D000212 ORTHO05D005509 1.2e-11 74.3 91 44.0
Carub.0002s1449 Capsella rubella HOM05D000212 ORTHO05D005509 1.2e-11 74.3 91 44.0
Glyma.20G107800 Glycine max HOM05D000212 ORTHO05D005509 1.2e-11 74.3 91 42.9
Lalb_Chr02g0143391 Lupinus albus HOM05D000212 ORTHO05D005509 1.2e-11 74.3 91 44.0
Sc08g0002900 Simmondsia chinensis HOM05D000212 ORTHO05D005509 1.2e-11 74.3 91 44.0
HPP92_022190 Vanilla planifolia HOM05D000212 ORTHO05D005509 1.2e-11 74.3 91 47.3
ECA246G1556 Erigeron canadensis HOM05D000212 ORTHO05D005509 1.6e-11 73.9 91 45.1
Lj5g0017900 Lotus japonicus HOM05D000212 ORTHO05D005509 1.6e-11 73.9 91 42.9
CSS0004363 Camellia sinensis var. sinensis HOM05D000212 ORTHO05D005509 2.1e-11 73.6 91 44.0
Sed0017644 Sechium edule HOM05D000212 ORTHO05D005509 2.1e-11 73.6 91 44.0
THA.LOC104807808 Tarenaya hassleriana HOM05D000212 ORTHO05D005509 2.1e-11 73.6 91 45.1
THA.LOC104824763 Tarenaya hassleriana HOM05D000212 ORTHO05D005509 2.1e-11 73.6 91 45.1
Atru.chr5.3323 Acer truncatum HOM05D000212 ORTHO05D005509 2.7e-11 73.2 91 42.9
EL10Ac9g21375 Beta vulgaris HOM05D000212 ORTHO05D005509 2.7e-11 73.2 91 42.9
AUR62043666 Chenopodium quinoa HOM05D000212 ORTHO05D005509 2.7e-11 73.2 91 42.9
Dinv14109 Davidia involucrata HOM05D000212 ORTHO05D005509 2.7e-11 73.2 91 46.2
Medtr1g112510 Medicago truncatula HOM05D000212 ORTHO05D005509 2.7e-11 73.2 91 42.9
ATR0180G008 Amborella trichopoda HOM05D000212 ORTHO05D005509 3.5e-11 72.8 91 48.4
Lalb_Chr06g0163651 Lupinus albus HOM05D000212 ORTHO05D005509 3.5e-11 72.8 91 42.9
Psat6g231880 Pisum sativum HOM05D000212 ORTHO05D005509 3.5e-11 72.8 91 42.9
COL.COLO4_17344 Corchorus olitorius HOM05D000212 ORTHO05D005509 4.6e-11 72.4 89 44.9
CsaV3_7G001060 Cucumis sativus L. HOM05D000212 ORTHO05D005509 4.6e-11 72.4 91 42.9
CANSAT25G2634 Cannabis sativa HOM05D000212 ORTHO05D005509 7.8e-11 71.6 91 41.8
AUR62013028 Chenopodium quinoa HOM05D000212 ORTHO05D005509 7.8e-11 71.6 91 41.8
HanXRQChr17g0544201 Helianthus annuus HOM05D000212 ORTHO05D005509 1.0e-10 71.2 91 44.0
Lsat_1_v5_gn_3_46860 Lactuca sativa HOM05D000212 ORTHO05D005509 1.0e-10 71.2 91 44.0
Phvul.007G019300 Phaseolus vulgaris HOM05D000212 ORTHO05D005509 1.0e-10 71.2 91 41.8
Pp3c19_20080 Physcomitrium patens HOM05D000212 ORTHO05D005509 2.3e-10 70.1 91 42.9
VMungo0720G0733 Vigna mungo HOM05D000212 ORTHO05D005509 2.3e-10 70.1 91 40.7
AagrBONN_evm.TU.Sc2ySwM_117.3207 Anthoceros agrestis HOM05D000212 ORTHO05D005509 3.0e-10 69.7 91 42.9
CBR_g49204 Chara braunii HOM05D000212 ORTHO05D005509 3.0e-10 69.7 91 41.8
FAN13G2675 Fragaria x ananassa HOM05D000212 ORTHO05D005509 3.0e-10 69.7 91 42.9
SEGI_20354 Sequoiadendron giganteum HOM05D000212 ORTHO05D000001 3.0e-10 69.7 89 43.8
Mapoly0015s0044 Marchantia polymorpha HOM05D000212 ORTHO05D005509 3.9e-10 69.3 91 44.0
Pp3c18_12500 Physcomitrium patens HOM05D000212 ORTHO05D005509 6.6e-10 68.6 91 42.9
CAN.G937.5 Capsicum annuum HOM05D000212 ORTHO05D005509 1.1e-09 67.8 89 43.8
MELO3C013350.2 Cucumis melo HOM05D000212 ORTHO05D005509 3.3e-09 66.2 91 39.6
CiPaw.06G121600 Carya illinoinensis HOM05D000212 ORTHO05D005509 4.3e-09 65.9 86 45.3
Hma1.2p1_0163F.1_g072520 Hydrangea macrophylla HOM05D000212 ORTHO05D005509 4.3e-09 65.9 86 43.0
Aa31LG11G2730 Aethionema arabicum HOM05D000212 ORTHO05D005509 3.6e-08 62.8 83 41.0
Nitab4.5_0000283g0400 Nicotiana tabacum HOM05D000212 ORTHO05D005509 6.2e-08 62.0 91 40.7
Nitab4.5_0003914g0050 Nicotiana tabacum HOM05D000212 ORTHO05D005509 6.2e-08 62.0 91 40.7
Lsat_1_v5_gn_6_32081 Lactuca sativa HOM05D000098 ORTHO05D001228 1.1e-07 61.2 91 40.7
SalBow1G2308 Salvia bowleyana HOM05D000212 ORTHO05D005509 2.4e-07 60.1 91 37.4
CAN.G588.84 Capsicum annuum HOM05D000212 ORTHO05D005509 3.1e-07 59.7 91 37.4
Lj5C178T12 Lonicera japonica HOM05D000212 ORTHO05D005509 6.9e-07 58.5 91 37.4
MBI08_g29141_MAGBIO Magnolia biondii HOM05D000212 ORTHO05D005509 9.0e-07 58.2 29 86.2
MBI15_g26707_MAGBIO Magnolia biondii HOM05D000858 ORTHO05D019567 2.0e-06 57.0 30 96.7


User provided reference genes

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