Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju41E32T0 Lonicera japonica HOM05D001969 ORTHO05D009003 1.4e-44 183.0 123 100.0
Nitab4.5_0006575g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 6.0e-35 151.0 88 79.5
Cc11_g01770 Coffea canephora HOM05D001969 ORTHO05D009003 1.3e-34 149.8 88 76.1
Cc11_g01780 Coffea canephora HOM05D001969 ORTHO05D009003 1.8e-34 149.4 88 77.3
Nitab4.5_0003069g0040 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.8e-34 149.4 88 77.3
HanXRQChr11g0350221 Helianthus annuus HOM05D001969 ORTHO05D009003 1.9e-33 146.0 88 72.7
TAR627G0343 Trochodendron aralioides HOM05D001969 ORTHO05D009003 1.9e-33 146.0 88 75.0
TAR627G0582 Trochodendron aralioides HOM05D001969 ORTHO05D009003 1.9e-33 146.0 88 75.0
TAR629G1647 Trochodendron aralioides HOM05D001969 ORTHO05D009003 1.9e-33 146.0 88 72.7
HanXRQChr09g0274351 Helianthus annuus HOM05D001969 ORTHO05D009003 3.3e-33 145.2 88 72.7
ECA236G1367 Erigeron canadensis HOM05D001969 ORTHO05D009003 4.3e-33 144.8 88 72.7
vmacro09267 Vaccinium macrocarpon HOM05D001969 ORTHO05D009003 4.3e-33 144.8 88 76.1
Oeu047331.1 Olea europaea HOM05D001969 ORTHO05D009003 9.6e-33 143.7 88 76.1
CSS0025708 Camellia sinensis var. sinensis HOM05D001969 ORTHO05D009003 1.3e-32 143.3 86 74.4
Lsat_1_v5_gn_3_137700 Lactuca sativa HOM05D001969 ORTHO05D009003 1.6e-32 142.9 88 72.7
ECA233G3782 Erigeron canadensis HOM05D001969 ORTHO05D009003 2.1e-32 142.5 88 71.6
Solyc07g064840.3 Solanum lycopersicum HOM05D001969 ORTHO05D009003 2.8e-32 142.1 88 72.7
Dinv23700 Davidia involucrata HOM05D001969 ORTHO05D009003 4.8e-32 141.4 85 74.1
Nn1g06730 Nelumbo nucifera HOM05D001969 ORTHO05D009003 6.2e-32 141.0 88 70.5
Actinidia39674 Actinidia chinensis HOM05D001969 ORTHO05D003463 8.2e-32 140.6 85 75.3
Sopen07g033040 Solanum pennellii HOM05D001969 ORTHO05D009003 8.2e-32 140.6 88 72.7
DCAR_011200 Daucus carota HOM05D001969 ORTHO05D009003 1.4e-31 139.8 82 72.0
HanXRQChr06g0167021 Helianthus annuus HOM05D001969 ORTHO05D009003 1.8e-31 139.4 88 69.3
Nn1g03931 Nelumbo nucifera HOM05D001969 ORTHO05D009003 1.8e-31 139.4 88 69.3
Rhsim04G0021700 Rhododendron simsii HOM05D001969 ORTHO05D009003 2.4e-31 139.0 81 76.5
Nitab4.5_0002260g0270 Nicotiana tabacum HOM05D001969 ORTHO05D009003 4.0e-31 138.3 88 70.5
Actinidia39300 Actinidia chinensis HOM05D001969 ORTHO05D009003 5.3e-31 137.9 88 72.7
MSTRG.23988 Avicennia marina HOM05D001969 ORTHO05D009003 5.3e-31 137.9 88 70.5
PGSC0003DMG400022306 Solanum tuberosum HOM05D001969 ORTHO05D009003 6.9e-31 137.5 88 69.3
Aqoxy6G02660 Aquilegia oxysepala HOM05D001969 ORTHO05D009003 1.2e-30 136.7 88 70.5
Nitab4.5_0003358g0010 Nicotiana tabacum HOM05D001969 ORTHO05D009003 1.2e-30 136.7 88 68.2
Peaxi162Scf00423g00066 Petunia axillaris HOM05D001969 ORTHO05D009003 1.5e-30 136.3 86 68.6
CANSAT78G0375 Cannabis sativa HOM05D001969 ORTHO05D003463 2.0e-30 136.0 88 72.7
CAN.G1310.15 Capsicum annuum HOM05D001969 ORTHO05D009003 1.3e-29 133.3 88 67.0
CAN.G1720.5 Capsicum annuum HOM05D001969 ORTHO05D009003 1.3e-29 133.3 88 68.2
QL08p048209 Quercus lobata HOM05D001969 ORTHO05D009003 3.8e-29 131.7 84 69.0
CANSAT21G1059 Cannabis sativa HOM05D001969 ORTHO05D009003 8.4e-29 130.6 88 68.2
SGA_v2.0_scaffold135G34841 Striga asiatica HOM05D001969 ORTHO05D009003 8.4e-29 130.6 88 65.9
Sed0013701 Sechium edule HOM05D001969 ORTHO05D009003 2.5e-28 129.0 89 66.3
COL.COLO4_13690 Corchorus olitorius HOM05D001969 ORTHO05D009003 3.2e-28 128.6 83 68.7
MD09G1092600 Malus domestica HOM05D001969 ORTHO05D009003 5.5e-28 127.9 89 64.0
MD17G1082700 Malus domestica HOM05D001969 ORTHO05D009003 5.5e-28 127.9 89 66.3
SalBow7G2523 Salvia bowleyana HOM05D001969 ORTHO05D009003 7.1e-28 127.5 88 65.9
SGA_v2.0_scaffold3G01553 Striga asiatica HOM05D001969 ORTHO05D009003 1.2e-27 126.7 80 71.2
Migut.H00150 Erythranthe guttata HOM05D001969 ORTHO05D009003 1.6e-27 126.3 83 67.5
Thecc.02G172900 Theobroma cacao HOM05D001969 ORTHO05D009003 1.6e-27 126.3 83 67.5
Manes.13G150950 Manihot esculenta HOM05D001969 ORTHO05D009003 2.1e-27 125.9 88 70.5
SalBow1G0343 Salvia bowleyana HOM05D001969 ORTHO05D009003 3.5e-27 125.2 81 69.1
SalBow7G4035 Salvia bowleyana HOM05D001969 ORTHO05D009003 3.5e-27 125.2 81 69.1
Glyma.09G257600 Glycine max HOM05D001969 ORTHO05D009003 4.6e-27 124.8 89 62.9
Gohir.A03G159600 Gossypium hirsutum HOM05D001969 ORTHO05D009003 4.6e-27 124.8 83 67.5
RcHm_v2.0_Chr2g0127151 Rosa chinensis HOM05D001969 ORTHO05D009003 4.6e-27 124.8 80 65.0
Lsat_1_v5_gn_2_3941 Lactuca sativa HOM05D001969 ORTHO05D009003 1.0e-26 123.6 82 64.6
Sed0009336 Sechium edule HOM05D001969 ORTHO05D009003 2.3e-26 122.5 88 63.6
Gohir.D02G182700 Gossypium hirsutum HOM05D001969 ORTHO05D009003 3.0e-26 122.1 83 66.3
Glyma.18G235000 Glycine max HOM05D001969 ORTHO05D009003 3.9e-26 121.7 89 61.8
VMungo1127G0255 Vigna mungo HOM05D001969 ORTHO05D009003 5.1e-26 121.3 89 60.7
Cfa003704 Carpinus fangiana HOM05D001969 ORTHO05D009003 1.1e-25 120.2 80 67.5
Phvul.011G177800 Phaseolus vulgaris HOM05D001969 ORTHO05D009003 1.5e-25 119.8 88 59.1
Potri.013G145800 Populus trichocarpa HOM05D001969 ORTHO05D009003 2.5e-25 119.0 88 64.8
Atru.chr6.3054 Acer truncatum HOM05D001969 ORTHO05D009003 3.3e-25 118.6 83 61.4
CiPaw.16G086600 Carya illinoinensis HOM05D001969 ORTHO05D009003 3.3e-25 118.6 88 63.6
MBI04_g38761_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 3.3e-25 118.6 88 61.4
FAN05G0495 Fragaria x ananassa HOM05D001969 ORTHO05D003463 5.7e-25 117.9 80 60.0
MBI06_g08467_MAGBIO Magnolia biondii HOM05D001969 ORTHO05D009003 5.7e-25 117.9 87 58.6
Duzib248G0251 Durio zibethinus HOM05D001969 ORTHO05D009003 7.4e-25 117.5 88 63.6
TPR.G31971 Trifolium pratense HOM05D001669 ORTHO05D006496 2.2e-24 115.9 82 59.8
unitig_748.g8143 Utricularia gibba HOM05D001969 ORTHO05D009003 2.2e-24 115.9 87 58.6
Ca_20693_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 3.7e-24 115.2 84 59.5
Ca_30106_v3 Cicer arietinum L. HOM05D001969 ORTHO05D009003 3.7e-24 115.2 84 59.5
Lj3g0006045 Lotus japonicus HOM05D001969 ORTHO05D009003 3.7e-24 115.2 88 58.0
TWI18G1087 Tripterygium wilfordii HOM05D001969 ORTHO05D009003 4.8e-24 114.8 83 60.2
PGR142G0421 Punica granatum HOM05D001969 ORTHO05D003463 6.3e-24 114.4 85 63.5
Psat7g197120 Pisum sativum HOM05D001969 ORTHO05D009003 8.2e-24 114.0 77 63.6
Medtr4g065010 Medicago truncatula HOM05D001969 ORTHO05D009003 1.4e-23 113.2 84 57.1
TPR.G21647 Trifolium pratense HOM05D001969 ORTHO05D009003 1.8e-23 112.8 77 63.6
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 2.4e-23 112.5 72 70.8
Ciclev10017445m.g Citrus clementina HOM05D001969 ORTHO05D003463 3.1e-23 112.1 78 64.1
GSVIVG01030575001 Vitis vinifera HOM05D001969 ORTHO05D009003 4.1e-23 111.7 68 75.0
Medtr4g046043 Medicago truncatula HOM05D001969 ORTHO05D009003 5.3e-23 111.3 77 63.6
Lj2g0006312 Lotus japonicus HOM05D001969 ORTHO05D009003 6.9e-23 110.9 87 56.3
Lalb_Chr19g0135421 Lupinus albus HOM05D001969 ORTHO05D009003 6.9e-23 110.9 88 55.7
AUR62029451 Chenopodium quinoa HOM05D001969 ORTHO05D009003 9.0e-23 110.5 81 64.2
Haze_15783 Corylus avellana HOM05D001969 ORTHO05D009003 5.9e-22 107.8 72 68.1
Zm00001eb194600 Zea mays HOM05D001969 ORTHO05D009003 1.0e-21 107.1 80 56.2
Zm00001eb225500 Zea mays HOM05D001969 ORTHO05D009003 1.0e-21 107.1 80 56.2
ATR1001G005 Amborella trichopoda HOM05D001969 ORTHO05D009003 1.3e-21 106.7 88 54.5
SEGI_26592 Sequoiadendron giganteum HOM05D001969 ORTHO05D009003 1.3e-21 106.7 81 54.3
Sc03g0002190 Simmondsia chinensis HOM05D001969 ORTHO05D009003 1.3e-21 106.7 87 51.7
Zm00001eb072880 Zea mays HOM05D001969 ORTHO05D009003 1.3e-21 106.7 80 56.2
Zm00001eb414500 Zea mays HOM05D001969 ORTHO05D009003 1.3e-21 106.7 80 56.2
Zm00001eb194610 Zea mays HOM05D001969 ORTHO05D009003 1.7e-21 106.3 80 55.0
Eucgr.K00935 Eucalyptus grandis HOM05D001969 ORTHO05D009003 2.2e-21 105.9 88 55.7
EL10Ac3g05654 Beta vulgaris HOM05D001969 ORTHO05D003463 2.9e-21 105.5 80 58.8
Zm00001eb350110 Zea mays HOM05D001969 ORTHO05D009003 1.9e-20 102.8 80 53.8
Gorai.005G205100 Gossypium raimondii HOM05D001969 ORTHO05D003463 2.5e-20 102.4 69 68.1
Mapoly0071s0092 Marchantia polymorpha HOM05D001969 ORTHO05D009003 2.5e-20 102.4 88 46.6
HPP92_010084 Vanilla planifolia HOM05D001969 ORTHO05D009003 3.2e-20 102.1 87 54.0
HPP92_010093 Vanilla planifolia HOM05D001969 ORTHO05D009003 3.2e-20 102.1 87 54.0
PSO384G2148 Papaver somniferum HOM05D001969 ORTHO05D009003 5.5e-20 101.3 72 58.3
PSO339G1404 Papaver somniferum HOM05D001969 ORTHO05D009003 2.7e-19 99.0 72 56.9
Hma1.2p1_0832F.1_g225700 Hydrangea macrophylla HOM05D001969 ORTHO05D009003 3.6e-19 98.6 88 56.8
Os07g0530300 Oryza sativa ssp. japonica HOM05D001969 ORTHO05D009003 3.6e-19 98.6 80 52.5
THA.LOC104811178 Tarenaya hassleriana HOM05D001969 ORTHO05D009003 3.9e-18 95.1 87 50.6
PSO017G7338 Papaver somniferum HOM05D001969 ORTHO05D009003 1.9e-17 92.8 91 48.4
Aa31LG9G15650 Aethionema arabicum HOM05D001969 ORTHO05D009003 1.3e-16 90.1 92 47.8
CsaV3_6G012510 Cucumis sativus L. HOM05D001969 ORTHO05D003463 1.3e-16 90.1 63 60.3
Pp3c6_17280 Physcomitrium patens HOM05D001969 ORTHO05D009003 1.7e-16 89.7 88 43.2
Manes.06G013500 Manihot esculenta HOM05D001969 ORTHO05D009003 2.8e-16 89.0 59 67.8
Rhsim04G0065900 Rhododendron simsii HOM05D001969 ORTHO05D003463 1.4e-15 86.7 51 72.5
AL3G54010 Arabidopsis lyrata HOM05D001969 ORTHO05D009003 2.0e-14 82.8 83 47.0
SMO351G0323 Selaginella moellendorffii HOM05D001969 ORTHO05D009003 2.6e-14 82.4 79 44.3
Zm00001eb414510 Zea mays HOM05D001969 ORTHO05D009003 2.2e-13 79.3 60 58.3
Cpa.g.sc17.168 Carica papaya HOM05D001969 ORTHO05D003463 2.5e-12 75.9 67 52.2
PSO675G3991 Papaver somniferum HOM05D001969 ORTHO05D009003 1.6e-11 73.2 93 41.9
FAN02G3777 Fragaria x ananassa HOM05D001969 ORTHO05D009003 4.7e-11 71.6 46 60.9
Ah.07g207260 Amaranthus hybridus HOM05D001969 ORTHO05D003463 1.0e-10 70.5 66 50.0
BcaC07g41194 Brassica carinata HOM05D001969 ORTHO05D003463 9.7e-09 63.9 69 44.9
C08p42010 Brassica napus HOM05D001969 ORTHO05D003463 9.7e-09 63.9 69 44.9
BolC8t51763H Brassica oleracea HOM05D001969 ORTHO05D003463 9.7e-09 63.9 69 44.9
Eucgr.K00932 Eucalyptus grandis HOM05D001969 ORTHO05D009003 1.3e-08 63.5 58 50.0
MCO02G305 Micromonas commoda HOM05D001969 ORTHO05D009003 2.2e-08 62.8 73 35.6
A09p58710 Brassica napus HOM05D001969 ORTHO05D003463 6.3e-08 61.2 69 42.0
BraA09t41257Z Brassica rapa HOM05D001969 ORTHO05D003463 6.3e-08 61.2 69 42.0
Thhalv10001991m.g Eutrema salsugineum HOM05D001969 ORTHO05D003463 6.3e-08 61.2 70 41.4
BcaB08g34941 Brassica carinata HOM05D001969 ORTHO05D003463 1.4e-07 60.1 69 40.6
Aa31LG8G17650 Aethionema arabicum HOM05D001969 ORTHO05D003463 9.1e-07 57.4 57 40.4


User provided reference genes

Program Settings