Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 3.6e-208 728.0 367 100.0
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 2.8e-88 329.7 368 52.2
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 3.1e-87 326.2 366 51.1
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 2.6e-86 323.2 366 50.8
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 1.5e-84 317.4 373 49.6
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 7.5e-81 305.1 367 48.2
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.6e-78 297.4 367 47.1
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 5.0e-77 292.4 367 46.9
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 7.2e-76 288.5 366 44.5
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 1.2e-75 287.7 370 45.7
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 4.7e-75 285.8 365 45.5
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 1.0e-74 284.6 368 45.1
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 8.8e-74 281.6 368 45.1
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.5e-73 280.8 366 45.4
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 2.0e-73 280.4 366 45.1
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 2.0e-73 280.4 365 46.8
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 3.4e-73 279.6 365 43.8
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 3.4e-73 279.6 376 46.3
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 4.4e-73 279.3 341 47.2
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 5.7e-73 278.9 367 46.0
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 9.8e-73 278.1 365 45.8
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 2.2e-72 276.9 366 43.7
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 3.7e-72 276.2 366 44.5
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 4.8e-72 275.8 366 44.8
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 4.8e-72 275.8 365 43.6
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 8.3e-72 275.0 316 49.7
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 8.3e-72 275.0 343 47.5
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 1.1e-71 274.6 394 43.9
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 4.1e-71 272.7 335 46.6
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.2e-70 271.2 366 44.0
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 2.0e-70 270.4 334 47.0
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 2.0e-70 270.4 368 45.7
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 2.7e-70 270.0 349 47.6
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 3.5e-70 269.6 370 43.0
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 3.5e-70 269.6 334 46.7
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 4.5e-70 269.2 370 42.7
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 7.7e-70 268.5 348 47.1
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 1.0e-69 268.1 343 44.9
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 1.0e-69 268.1 366 45.6
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.3e-69 267.7 344 47.4
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.3e-69 266.9 368 44.3
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 5.0e-69 265.8 345 45.5
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 8.6e-69 265.0 367 43.1
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 8.6e-69 265.0 368 44.3
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 1.9e-68 263.8 369 42.8
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 2.5e-68 263.5 366 45.6
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.5e-68 263.5 368 44.0
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 2.5e-68 263.5 393 41.2
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 7.2e-68 261.9 352 45.2
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 9.5e-68 261.5 367 42.0
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.1e-67 260.4 368 44.6
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 2.8e-67 260.0 352 44.6
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 6.1e-67 258.8 365 41.4
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 1.4e-66 257.7 368 42.1
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.4e-66 257.7 334 45.8
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 3.0e-66 256.5 382 41.1
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 4.0e-66 256.1 369 42.3
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 4.0e-66 256.1 369 42.3
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 1.5e-65 254.2 369 42.0
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 2.0e-65 253.8 365 41.6
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 4.4e-65 252.7 365 41.9
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 5.7e-65 252.3 389 40.4
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 7.5e-65 251.9 366 42.9
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 7.5e-65 251.9 365 41.6
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 1.3e-64 251.1 365 41.9
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 1.3e-64 251.1 314 46.2
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 1.7e-64 250.8 324 46.3
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.7e-64 250.8 367 40.9
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 3.7e-64 249.6 295 47.5
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 6.3e-64 248.8 370 41.4
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 1.1e-63 248.1 344 44.8
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 3.1e-63 246.5 343 44.3
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 4.1e-63 246.1 370 40.8
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 2.0e-62 243.8 269 52.0
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 2.7e-62 243.4 344 44.8
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 1.0e-61 241.5 363 38.0
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 1.0e-61 241.5 370 40.0
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 2.9e-61 240.0 343 38.8
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 3.8e-61 239.6 347 42.7
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 1.1e-60 238.0 308 43.2
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 2.5e-60 236.9 331 45.3
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 3.3e-60 236.5 308 42.9
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 2.1e-59 233.8 367 38.7
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 3.6e-59 233.0 370 40.3
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 8.0e-59 231.9 370 36.5
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 1.0e-58 231.5 370 40.8
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 4.0e-58 229.6 324 44.4
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 6.8e-58 228.8 342 39.5
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 1.7e-56 224.2 384 36.2
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 4.9e-56 222.6 342 37.4
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 8.3e-56 221.9 370 35.7
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 9.2e-55 218.4 362 35.9
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 9.2e-55 218.4 357 35.9
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 9.2e-55 218.4 362 35.9
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 9.2e-55 218.4 372 37.9
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.6e-54 217.6 186 59.7
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 1.6e-54 217.6 364 36.8
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 1.6e-54 217.6 364 36.8
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 3.5e-54 216.5 356 36.0
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 1.0e-53 214.9 387 35.4
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.0e-53 214.9 347 40.3
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 5.0e-53 212.6 293 45.1
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 8.6e-53 211.8 172 63.4
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 8.6e-53 211.8 384 34.9
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 8.6e-53 211.8 361 36.0
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 1.9e-52 210.7 373 34.0
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 3.3e-52 209.9 333 38.4
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 3.3e-52 209.9 333 38.4
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 4.3e-52 209.5 388 33.0
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 7.3e-52 208.8 183 56.8
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 2.8e-51 206.8 313 38.0
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 5.2e-50 202.6 344 39.5
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 3.4e-49 199.9 371 36.4
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 2.4e-47 193.7 343 36.4
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 5.4e-47 192.6 367 35.7
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 1.6e-46 191.0 340 37.9
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 2.3e-45 187.2 218 49.5
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 6.6e-45 185.7 241 45.6
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.1e-44 184.9 362 37.0
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 5.6e-44 182.6 164 54.3
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 6.4e-40 169.1 342 33.9
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.2e-39 166.8 295 39.0
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 6.0e-38 162.5 366 31.1
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 1.3e-37 161.4 325 36.0
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.2e-35 154.8 285 36.1
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 8.1e-35 152.1 366 31.4
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 1.8e-34 151.0 313 36.4
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 8.9e-34 148.7 366 31.4
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 3.4e-33 146.7 154 48.1
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 6.4e-32 142.5 331 30.2
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 5.4e-31 139.4 347 32.6
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 5.4e-31 139.4 370 30.5
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 1.7e-29 134.4 335 33.7
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 1.2e-27 128.3 334 31.7
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 4.0e-26 123.2 183 36.6
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 4.0e-26 123.2 115 58.3
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 7.8e-22 109.0 99 59.6
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 3.8e-16 90.1 237 30.0
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 9.3e-15 85.5 340 27.4
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 2.1e-11 74.3 144 31.9
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 7.6e-09 65.9 65 52.3
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.9e-08 63.2 65 55.4
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 1.6e-06 58.2 50 62.0
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 6.0e-06 56.2 81 39.5


User provided reference genes

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