Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00575g0004232 Lotus japonicus HOM05D006316 ORTHO05D008032 4.8e-105 384.4 184 100.0
LjContig00576g0014419 Lotus japonicus HOM05D006316 ORTHO05D008032 4.8e-105 384.4 184 100.0
Lj2g0021665 Lotus japonicus HOM05D006316 ORTHO05D008032 1.3e-102 376.3 184 97.3
Lj2g0021371 Lotus japonicus HOM05D006316 ORTHO05D008032 3.3e-85 318.5 156 96.8
Lj4g0011706 Lotus japonicus HOM05D006316 ORTHO05D008032 2.6e-74 282.3 184 77.2
VMungo1215G0091 Vigna mungo HOM05D006316 ORTHO05D008032 3.9e-70 268.5 184 74.5
Medtr4g124260 Medicago truncatula HOM05D006316 ORTHO05D008032 5.1e-70 268.1 184 72.8
arahy.Tifrunner.gnm1.ann1.NEV66G Arachis hypogaea HOM05D006316 ORTHO05D008032 8.6e-70 267.3 184 73.9
arahy.Tifrunner.gnm1.ann1.ZN6V8N Arachis hypogaea HOM05D006316 ORTHO05D008032 8.6e-70 267.3 184 73.9
Glyma.13G117200 Glycine max HOM05D006316 ORTHO05D008032 1.1e-69 266.9 184 73.9
Phvul.003G124500 Phaseolus vulgaris HOM05D006316 ORTHO05D008032 5.6e-69 264.6 184 72.3
Lalb_Chr12g0200491 Lupinus albus HOM05D006316 ORTHO05D008032 2.0e-66 256.1 170 77.1
CiPaw.01G127100 Carya illinoinensis HOM05D006316 ORTHO05D008032 1.7e-65 253.1 186 67.2
C05p48790 Brassica napus HOM05D006316 ORTHO05D008032 7.1e-64 247.7 184 65.8
BolC5t33616H Brassica oleracea HOM05D006316 ORTHO05D008032 7.1e-64 247.7 184 65.8
CSS0049495 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 7.1e-64 247.7 182 68.1
Cfa015754 Carpinus fangiana HOM05D006316 ORTHO05D008032 9.3e-64 247.3 174 69.0
Thhalv10021423m.g Eutrema salsugineum HOM05D006316 ORTHO05D008032 9.3e-64 247.3 184 65.8
QL06p014723 Quercus lobata HOM05D006316 ORTHO05D008032 9.3e-64 247.3 184 66.8
CSS0010190 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 1.2e-63 246.9 182 68.1
GSVIVG01017710001 Vitis vinifera HOM05D006316 ORTHO05D008032 1.2e-63 246.9 184 67.9
DCAR_002560 Daucus carota HOM05D006316 ORTHO05D008032 3.5e-63 245.4 177 68.4
Sp3g15720 Schrenkiella parvula HOM05D006316 ORTHO05D008032 4.6e-63 245.0 184 65.8
BcaC05g28772 Brassica carinata HOM05D006316 ORTHO05D008032 7.8e-63 244.2 184 64.7
PGR031G3724 Punica granatum HOM05D006316 ORTHO05D008032 7.8e-63 244.2 186 66.1
CSS0037556 Camellia sinensis var. sinensis HOM05D006316 ORTHO05D008032 1.0e-62 243.8 182 67.0
Hund12266 Selenicereus undatus HOM05D006316 ORTHO05D008032 1.0e-62 243.8 174 68.4
A05p32260 Brassica napus HOM05D006316 ORTHO05D008032 3.9e-62 241.9 175 67.4
Sc19g0002500 Simmondsia chinensis HOM05D006316 ORTHO05D008032 3.9e-62 241.9 182 67.0
EL10Ac3g06220 Beta vulgaris HOM05D006316 ORTHO05D008032 5.1e-62 241.5 174 67.8
BcaB06g25834 Brassica carinata HOM05D006316 ORTHO05D008032 5.1e-62 241.5 184 64.7
Carub.0003s1730 Capsella rubella HOM05D006316 ORTHO05D008032 5.1e-62 241.5 184 65.2
CARHR092900 Cardamine hirsuta HOM05D006316 ORTHO05D008032 5.1e-62 241.5 176 66.5
TWI74G1230 Tripterygium wilfordii HOM05D006316 ORTHO05D008032 5.1e-62 241.5 180 68.9
Duzib128G0584 Durio zibethinus HOM05D006316 ORTHO05D008032 6.6e-62 241.1 174 66.7
Eucgr.B02199 Eucalyptus grandis HOM05D006316 ORTHO05D008032 6.6e-62 241.1 186 66.7
BraA05t22055Z Brassica rapa HOM05D006316 ORTHO05D008032 1.1e-61 240.4 175 66.9
Cc07_g19930 Coffea canephora HOM05D006316 ORTHO05D008032 1.1e-61 240.4 163 71.8
AL3G30660 Arabidopsis lyrata HOM05D006316 ORTHO05D008032 1.5e-61 240.0 184 64.7
MSTRG.20325 Avicennia marina HOM05D006316 ORTHO05D008032 1.5e-61 240.0 165 69.1
AUR62002525 Chenopodium quinoa HOM05D006316 ORTHO05D008032 1.9e-61 239.6 174 67.2
THA.LOC104826519 Tarenaya hassleriana HOM05D006316 ORTHO05D008032 1.9e-61 239.6 163 72.4
AT3G17590 Arabidopsis thaliana HOM05D006316 ORTHO05D008032 2.5e-61 239.2 184 64.7
COL.COLO4_13438 Corchorus olitorius HOM05D006316 ORTHO05D008032 2.5e-61 239.2 174 66.1
Gohir.D05G000900 Gossypium hirsutum HOM05D006316 ORTHO05D008032 2.5e-61 239.2 174 66.1
Gorai.009G000800 Gossypium raimondii HOM05D006316 ORTHO05D008032 2.5e-61 239.2 174 66.1
Sed0018318 Sechium edule HOM05D006316 ORTHO05D008032 5.6e-61 238.0 186 64.0
Ah.07g202850 Amaranthus hybridus HOM05D006316 ORTHO05D008032 7.3e-61 237.7 172 69.2
Ciclev10005749m.g Citrus clementina HOM05D006316 ORTHO05D008032 7.3e-61 237.7 184 64.1
Aa31LG8G4460 Aethionema arabicum HOM05D006316 ORTHO05D008032 1.3e-60 236.9 184 64.7
Gohir.A05G000600 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.3e-60 236.9 174 65.5
Gohir.D09G137500 Gossypium hirsutum HOM05D006316 ORTHO05D008032 1.3e-60 236.9 174 66.1
HanXRQChr05g0148931 Helianthus annuus HOM05D006316 ORTHO05D008032 2.1e-60 236.1 181 64.6
Lj6A704G50 Lonicera japonica HOM05D006316 ORTHO05D008032 2.8e-60 235.7 163 69.3
Sopen11g008410 Solanum pennellii HOM05D006316 ORTHO05D008032 2.8e-60 235.7 180 65.6
Lsat_1_v5_gn_6_117760 Lactuca sativa HOM05D006316 ORTHO05D008032 3.6e-60 235.3 181 63.5
Manes.05G122900 Manihot esculenta HOM05D006316 ORTHO05D008032 3.6e-60 235.3 175 67.4
CsaV3_3G015610 Cucumis sativus L. HOM05D006316 ORTHO05D008032 4.8e-60 235.0 186 64.0
Migut.B00749 Erythranthe guttata HOM05D006316 ORTHO05D008032 4.8e-60 235.0 165 67.9
Atru.chr4.3188 Acer truncatum HOM05D006316 ORTHO05D008032 8.1e-60 234.2 184 62.0
MELO3C006760.2 Cucumis melo HOM05D006316 ORTHO05D008032 8.1e-60 234.2 186 63.4
CAN.G255.2 Capsicum annuum HOM05D006316 ORTHO05D008032 1.1e-59 233.8 175 65.1
SalBow7G1663 Salvia bowleyana HOM05D006316 ORTHO05D008032 1.4e-59 233.4 165 68.5
TPR.G12708 Trifolium pratense HOM05D006316 ORTHO05D008032 1.8e-59 233.0 167 69.5
Gorai.006G157900 Gossypium raimondii HOM05D006316 ORTHO05D008032 3.1e-59 232.3 174 64.9
Nitab4.5_0000051g0260 Nicotiana tabacum HOM05D006316 ORTHO05D008032 9.0e-59 230.7 165 66.7
ECA246G2315 Erigeron canadensis HOM05D006316 ORTHO05D008032 1.2e-58 230.3 148 74.3
ClCG05G006940 Citrullus lanatus HOM05D006316 ORTHO05D008032 1.5e-58 229.9 186 63.4
Psat4g020720 Pisum sativum HOM05D006316 ORTHO05D008032 2.0e-58 229.6 184 65.8
Actinidia24554 Actinidia chinensis HOM05D006316 ORTHO05D008032 2.6e-58 229.2 172 65.7
Gohir.A09G135800 Gossypium hirsutum HOM05D006316 ORTHO05D008032 2.6e-58 229.2 174 64.4
Nn4g25293 Nelumbo nucifera HOM05D006316 ORTHO05D008032 3.4e-58 228.8 184 61.4
Nitab4.5_0004737g0050 Nicotiana tabacum HOM05D006316 ORTHO05D008032 3.4e-58 228.8 165 66.1
Haze_00749 Corylus avellana HOM05D006316 ORTHO05D008032 5.8e-58 228.0 167 68.3
Sopen11g008420 Solanum pennellii HOM05D006316 ORTHO05D008032 9.9e-58 227.3 175 66.3
Potri.010G004100 Populus trichocarpa HOM05D006316 ORTHO05D008032 1.3e-57 226.9 173 64.2
unitig_578.g15959 Utricularia gibba HOM05D006316 ORTHO05D008032 1.3e-57 226.9 173 64.2
CANSAT56G2492 Cannabis sativa HOM05D006316 ORTHO05D008032 1.7e-57 226.5 174 66.7
Peaxi162Scf00571g00412 Petunia axillaris HOM05D006316 ORTHO05D008032 1.7e-57 226.5 175 63.4
vmacro04190 Vaccinium macrocarpon HOM05D006316 ORTHO05D008032 8.4e-57 224.2 196 59.7
MD13G1137100 Malus domestica HOM05D006316 ORTHO05D008032 1.4e-56 223.4 174 61.5
Aqoxy2G02444 Aquilegia oxysepala HOM05D006316 ORTHO05D008032 1.2e-55 220.3 173 61.3
SGA_v2.0_scaffold131G34373 Striga asiatica HOM05D006316 ORTHO05D008032 3.5e-55 218.8 207 55.6
CDE12G0513 Ceratophyllum demersum HOM05D006316 ORTHO05D008032 1.7e-54 216.5 174 60.9
PSO210G4075 Papaver somniferum HOM05D006316 ORTHO05D008032 1.1e-53 213.8 173 61.3
Sabra10G0003500 Salix brachista HOM05D006316 ORTHO05D008032 1.9e-53 213.0 163 64.4
SHI09041 Sapria himalayana HOM05D006316 ORTHO05D008032 2.5e-53 212.6 189 58.2
PSO761G0163 Papaver somniferum HOM05D006316 ORTHO05D008032 4.3e-53 211.8 173 60.1
TAR365G1184 Trochodendron aralioides HOM05D006316 ORTHO05D008032 4.3e-53 211.8 207 53.6
Thecc.03G258800 Theobroma cacao HOM05D006316 ORTHO05D008032 4.8e-52 208.4 174 61.5
ATR0796G033 Amborella trichopoda HOM05D006316 ORTHO05D008032 8.1e-52 207.6 173 57.8
HPP92_002633 Vanilla planifolia HOM05D006316 ORTHO05D008032 9.9e-50 200.7 148 65.5
AUR62023666 Chenopodium quinoa HOM05D006316 ORTHO05D008032 9.3e-48 194.1 272 42.6
RcHm_v2.0_Chr4g0428001 Rosa chinensis HOM05D006316 ORTHO05D008032 9.3e-48 194.1 161 56.5
FvH4_4g21770 Fragaria vesca HOM05D006316 ORTHO05D008032 7.9e-47 191.0 161 55.9
Zm00001eb354530 Zea mays HOM05D006316 ORTHO05D008032 7.9e-47 191.0 164 55.5
FAN17G2953 Fragaria x ananassa HOM05D006316 ORTHO05D008032 2.3e-46 189.5 161 55.3
FAN12G0215 Fragaria x ananassa HOM05D006316 ORTHO05D008032 3.3e-45 185.7 141 59.6
FAN07G2419 Fragaria x ananassa HOM05D006316 ORTHO05D008032 1.6e-44 183.3 140 59.3
Os02g0723700 Oryza sativa ssp. japonica HOM05D006316 ORTHO05D008032 4.8e-44 181.8 163 52.8
Rhsim13G0235700 Rhododendron simsii HOM05D006316 ORTHO05D008032 5.8e-42 174.9 210 47.6
Mapoly0059s0054 Marchantia polymorpha HOM05D006316 ORTHO05D008032 3.0e-38 162.5 172 48.8
Solyc11g013400.3 Solanum lycopersicum HOM05D006316 ORTHO05D008032 3.9e-38 162.2 139 59.7
Dinv32178 Davidia involucrata HOM05D006316 ORTHO05D008032 4.3e-37 158.7 103 72.8
Prupe.1G208100 Prunus persica HOM05D006316 ORTHO05D008032 4.3e-37 158.7 139 56.8
SMO358G0571 Selaginella moellendorffii HOM05D006316 ORTHO05D008032 5.7e-37 158.3 167 47.3
CBR_g38190 Chara braunii HOM05D006316 ORTHO05D008032 4.5e-34 148.7 171 43.9
TAR362G1307 Trochodendron aralioides HOM05D006316 ORTHO05D008032 3.8e-33 145.6 138 54.3
Glyma.17G042702 Glycine max HOM05D006316 ORTHO05D008032 2.1e-31 139.8 112 63.4
AagrBONN_evm.TU.Sc2ySwM_228.3212 Anthoceros agrestis HOM05D006316 ORTHO05D008032 4.6e-31 138.7 167 42.5
Rhsim04G0168300 Rhododendron simsii HOM05D006316 ORTHO05D008032 2.6e-26 122.9 138 50.0
Rhsim04G0168500 Rhododendron simsii HOM05D006316 ORTHO05D008032 1.3e-25 120.6 138 49.3
Solyc11g013410.2 Solanum lycopersicum HOM05D006316 ORTHO05D008032 4.2e-24 115.5 80 72.5
SEGI_01321 Sequoiadendron giganteum HOM05D006316 ORTHO05D008032 5.5e-24 115.2 101 56.4
Cpa.g.sc146.8 Carica papaya HOM05D006316 ORTHO05D008032 1.8e-22 110.2 62 82.3
Glyma.09G159500 Glycine max HOM05D006316 ORTHO05D008032 2.2e-20 103.2 96 53.1
Cpa.g.c44700 Carica papaya HOM05D006316 ORTHO05D008032 6.9e-19 98.2 55 76.4
MBI18_g03841_MAGBIO Magnolia biondii HOM05D006046 ORTHO05D007580 1.5e-18 97.1 76 61.8
DCAR_030416 Daucus carota HOM05D006316 ORTHO05D008032 2.6e-13 79.7 92 46.7
Cfa025220 Carpinus fangiana HOM05D006316 ORTHO05D008032 1.6e-10 70.5 170 25.9
Ca_21361_v3 Cicer arietinum L. HOM05D006316 ORTHO05D008032 1.9e-08 63.5 61 55.7
RcHm_v2.0_Chr5g0025761 Rosa chinensis HOM05D006316 ORTHO05D008032 1.9e-08 63.5 66 47.0


User provided reference genes

Program Settings