Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 0.0e+00 1273.5 653 100.0
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 0.0e+00 1103.6 651 86.5
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 0.0e+00 1096.3 654 86.1
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 0.0e+00 1088.6 654 85.3
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 3.1e-311 1071.2 652 84.2
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 1.3e-306 1055.8 649 83.1
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 1.6e-304 1048.9 653 83.0
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 1.1e-289 999.6 692 75.1
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 3.3e-289 998.0 603 84.9
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 1.2e-288 996.1 692 75.0
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 3.0e-274 948.3 654 74.6
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 1.6e-272 942.6 654 74.3
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 4.8e-272 941.0 657 72.9
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 2.6e-270 935.3 656 73.9
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 2.7e-267 925.2 654 72.6
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 4.6e-267 924.5 656 73.2
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 5.1e-266 921.0 653 75.7
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 5.1e-266 921.0 654 72.6
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 6.7e-266 920.6 654 72.9
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 9.6e-265 916.8 654 72.5
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 1.3e-264 916.4 659 71.8
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 1.6e-264 916.0 656 72.6
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 1.6e-264 916.0 654 73.1
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 1.6e-264 916.0 653 72.4
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 4.8e-264 914.4 650 73.2
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 9.0e-263 910.2 654 71.1
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 9.0e-263 910.2 655 72.1
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 3.4e-262 908.3 656 71.2
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 5.8e-262 907.5 654 71.4
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 3.8e-261 904.8 654 71.1
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 4.9e-261 904.4 654 71.6
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 7.1e-260 900.6 658 70.1
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 9.3e-260 900.2 653 70.3
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 3.5e-259 898.3 654 71.9
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 4.6e-259 897.9 653 71.5
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 7.9e-259 897.1 658 70.1
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 8.7e-258 893.6 658 70.4
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 1.5e-257 892.9 659 69.7
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 1.5e-257 892.9 653 69.7
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 1.3e-256 889.8 654 70.2
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 2.8e-256 888.6 654 69.9
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 2.8e-256 888.6 648 70.7
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 3.7e-256 888.3 655 70.5
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 6.9e-255 884.0 658 69.1
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 1.2e-254 883.2 660 68.8
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 3.4e-254 881.7 658 69.0
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 1.0e-253 880.2 654 69.1
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 1.3e-253 879.8 657 68.6
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 5.0e-253 877.9 654 69.6
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 8.5e-253 877.1 657 69.7
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 8.5e-253 877.1 660 68.2
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 4.2e-252 874.8 691 66.3
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 7.9e-251 870.5 655 67.8
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 3.0e-250 868.6 654 69.0
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 5.1e-250 867.8 654 68.5
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 1.1e-249 866.7 657 68.6
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 1.5e-249 866.3 651 68.4
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 7.4e-249 864.0 662 68.0
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 3.7e-248 861.7 661 67.8
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 8.2e-248 860.5 654 69.6
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 1.4e-247 859.8 660 67.7
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 5.3e-247 857.8 655 67.8
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 4.5e-246 854.7 655 67.9
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 7.7e-246 854.0 654 66.7
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 8.5e-245 850.5 649 67.2
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 1.1e-244 850.1 658 67.5
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 1.9e-244 849.4 655 67.8
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 1.6e-243 846.3 650 67.5
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 3.9e-242 841.6 645 68.1
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 8.8e-242 840.5 656 66.9
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 2.8e-240 835.5 611 71.2
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 2.0e-238 829.3 657 65.4
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 1.0e-237 827.0 659 66.2
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 6.5e-237 824.3 584 72.4
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 1.4e-236 823.2 723 61.8
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 1.2e-235 820.1 587 72.7
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 1.6e-235 819.7 689 64.4
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 3.9e-234 815.1 648 66.2
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 1.7e-232 809.7 658 63.8
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 9.1e-231 803.9 644 65.8
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 5.0e-229 798.1 659 64.9
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 4.0e-226 788.5 654 65.4
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 9.1e-223 777.3 592 68.9
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 1.5e-220 770.0 615 65.5
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 1.1e-215 753.8 864 51.4
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 6.6e-213 744.6 665 59.8
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 3.0e-210 735.7 657 59.7
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 7.5e-201 704.5 683 57.0
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 8.3e-200 701.0 656 56.9
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 4.1e-191 672.2 846 48.3
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 1.7e-189 666.8 508 67.9
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 6.4e-184 648.3 667 53.4
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 3.0e-181 639.4 569 61.0
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.1e-180 637.5 477 71.1
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 5.4e-175 618.6 476 68.5
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 7.3e-164 581.6 563 56.7
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 6.9e-162 575.1 490 62.9
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 4.5e-161 572.4 601 54.7
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 4.2e-143 512.7 436 61.9
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 5.0e-128 462.6 438 58.2
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 1.4e-114 417.9 460 51.7
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 3.7e-107 393.3 345 60.9
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 1.5e-87 328.2 279 64.9
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 1.5e-79 301.6 445 42.7
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 6.2e-78 296.2 411 44.8
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 5.2e-77 293.1 237 62.4
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 1.9e-74 284.6 198 72.2
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 5.6e-71 273.1 202 67.8
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 4.1e-66 256.9 176 71.0
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 8.4e-59 232.6 373 41.8
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.2e-57 228.8 166 67.5
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 8.7e-56 222.6 249 55.4
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 3.0e-48 197.6 142 72.5
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 5.8e-44 183.3 137 67.9
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-41 175.3 399 32.6
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 2.5e-39 167.9 169 55.0
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 5.8e-36 156.8 147 58.5
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 9.3e-34 149.4 97 74.2
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 1.8e-32 145.2 94 74.5
Nn1g08035 Nelumbo nucifera HOM05D001598 ORTHO05D007192 6.7e-32 143.3 89 77.5
BcaB08g37328 Brassica carinata HOM05D001598 ORTHO05D007192 4.8e-30 137.1 93 72.0
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 6.3e-30 136.7 90 71.1
SEGI_32063 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 3.1e-29 134.4 103 67.0
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 1.2e-28 132.5 155 52.3
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 1.2e-28 132.5 79 78.5
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 1.5e-28 132.1 96 75.0
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 7.6e-28 129.8 96 62.5
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 7.9e-25 119.8 176 39.2
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 2.3e-24 118.2 89 71.9
BcaB08g37330 Brassica carinata HOM05D001598 ORTHO05D007192 5.1e-24 117.1 83 71.1
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 5.7e-23 113.6 65 89.2
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 6.3e-22 110.2 202 34.7
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 2.0e-20 105.1 148 48.0
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 1.7e-19 102.1 203 34.0
BcaC04g19497 Brassica carinata HOM05D001598 ORTHO05D007192 1.9e-18 98.6 90 60.0
TAR374G1328 Trochodendron aralioides HOM05D001598 ORTHO05D007192 3.6e-17 94.4 71 69.0
Glyma.16G121250 Glycine max HOM05D001598 ORTHO05D046738 2.3e-16 91.7 72 73.6
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 5.1e-16 90.5 67 67.2
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 2.4e-13 81.6 61 68.9
CBR_g53769 Chara braunii HOM05D000019 ORTHO05D000002 5.3e-13 80.5 61 65.6
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 9.1e-13 79.7 50 76.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 9.1e-13 79.7 50 76.0
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 6.5e-11 73.6 50 70.0
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 1.5e-07 62.4 65 44.6


User provided reference genes

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