Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00564g0015808 Lotus japonicus HOM05D002380 ORTHO05D008286 5.9e-35 150.2 70 100.0
LjContig00564g0001978 Lotus japonicus HOM05D002380 ORTHO05D008286 1.4e-31 139.0 64 98.4
LjContig00564g0004339 Lotus japonicus HOM05D002380 ORTHO05D008286 1.4e-31 139.0 64 98.4
Glyma.14G046600 Glycine max HOM05D002380 ORTHO05D008286 4.3e-30 134.0 64 93.8
arahy.Tifrunner.gnm1.ann1.C2B2I7 Arachis hypogaea HOM05D002380 ORTHO05D008286 7.4e-30 133.3 64 90.6
arahy.Tifrunner.gnm1.ann1.Y9X1U6 Arachis hypogaea HOM05D002380 ORTHO05D008286 7.4e-30 133.3 64 90.6
Medtr8g465870 Medicago truncatula HOM05D002380 ORTHO05D008286 2.2e-29 131.7 64 90.6
Phvul.008G211500 Phaseolus vulgaris HOM05D002380 ORTHO05D008286 3.4e-27 124.4 66 87.9
Lalb_Chr04g0249901 Lupinus albus HOM05D002380 ORTHO05D008286 1.0e-26 122.9 64 82.8
Prupe.3G212600 Prunus persica HOM05D002380 ORTHO05D008286 4.2e-25 117.5 62 79.0
Cpa.g.sc132.4 Carica papaya HOM05D002380 ORTHO05D008286 5.5e-25 117.1 64 76.6
Cfa014331 Carpinus fangiana HOM05D002380 ORTHO05D008286 7.2e-25 116.7 64 78.1
Potri.014G156800 Populus trichocarpa HOM05D002380 ORTHO05D008286 1.2e-24 115.9 64 75.0
VMungo0647G2578 Vigna mungo HOM05D002380 ORTHO05D008286 1.2e-24 115.9 64 81.2
Aqoxy1G02993 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 2.1e-24 115.2 62 74.2
EL10Ac7g16733 Beta vulgaris HOM05D002380 ORTHO05D008286 3.6e-24 114.4 64 75.0
CiPaw.04G112000 Carya illinoinensis HOM05D002380 ORTHO05D008286 4.7e-24 114.0 64 78.1
MD09G1112100 Malus domestica HOM05D002380 ORTHO05D008286 4.7e-24 114.0 62 75.8
QL08p031162 Quercus lobata HOM05D002380 ORTHO05D008286 6.1e-24 113.6 62 75.8
PGR042G3960 Punica granatum HOM05D002380 ORTHO05D008286 7.9e-24 113.2 65 72.3
Atru.chr6.3236 Acer truncatum HOM05D002380 ORTHO05D008286 1.4e-23 112.5 64 75.0
Gohir.A07G186600 Gossypium hirsutum HOM05D002380 ORTHO05D008286 1.4e-23 112.5 64 71.9
Gohir.D07G193100 Gossypium hirsutum HOM05D002380 ORTHO05D008286 1.8e-23 112.1 64 71.9
PSO541G2284 Papaver somniferum HOM05D002380 ORTHO05D008286 1.8e-23 112.1 64 71.9
PSO675G4452 Papaver somniferum HOM05D002380 ORTHO05D008286 1.8e-23 112.1 64 71.9
GSVIVG01030484001 Vitis vinifera HOM05D002380 ORTHO05D008286 3.9e-23 110.9 62 74.2
ClCG02G002150 Citrullus lanatus HOM05D002380 ORTHO05D008286 5.1e-23 110.5 64 76.6
Gorai.001G216200 Gossypium raimondii HOM05D002380 ORTHO05D008286 5.1e-23 110.5 64 70.3
Sabra14G0118600 Salix brachista HOM05D002380 ORTHO05D008286 5.1e-23 110.5 64 71.9
RcHm_v2.0_Chr2g0158461 Rosa chinensis HOM05D002380 ORTHO05D008286 8.8e-23 109.8 64 73.4
BolC3t14508H Brassica oleracea HOM05D002380 ORTHO05D008286 1.1e-22 109.4 65 73.8
TWI18G0959 Tripterygium wilfordii HOM05D002380 ORTHO05D008286 1.1e-22 109.4 64 73.4
A03p18220 Brassica napus HOM05D002380 ORTHO05D008286 1.5e-22 109.0 64 75.0
CsaV3_7G003340 Cucumis sativus L. HOM05D002380 ORTHO05D008286 2.6e-22 108.2 64 75.0
Hund20419 Selenicereus undatus HOM05D002380 ORTHO05D008286 2.6e-22 108.2 64 70.3
FvH4_6g42610 Fragaria vesca HOM05D002380 ORTHO05D008286 3.3e-22 107.8 64 71.9
FAN14G4830 Fragaria x ananassa HOM05D002380 ORTHO05D008286 3.3e-22 107.8 64 71.9
Rhsim06G0166100 Rhododendron simsii HOM05D002380 ORTHO05D008286 3.3e-22 107.8 63 66.7
Sed0027871 Sechium edule HOM05D002380 ORTHO05D008286 3.3e-22 107.8 64 75.0
vmacro12176 Vaccinium macrocarpon HOM05D002380 ORTHO05D008286 3.3e-22 107.8 63 68.3
Actinidia13740 Actinidia chinensis HOM05D002380 ORTHO05D008286 4.4e-22 107.5 63 68.3
BcaC01g05900 Brassica carinata HOM05D002380 ORTHO05D008286 4.4e-22 107.5 64 73.4
C03p21270 Brassica napus HOM05D002380 ORTHO05D008286 4.4e-22 107.5 64 73.4
BraA03t11082Z Brassica rapa HOM05D002380 ORTHO05D008286 4.4e-22 107.5 64 73.4
Thhalv10016422m.g Eutrema salsugineum HOM05D002380 ORTHO05D008286 4.4e-22 107.5 64 73.4
FAN05G1087 Fragaria x ananassa HOM05D002380 ORTHO05D008286 4.4e-22 107.5 64 71.9
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 4.4e-22 107.5 63 68.3
AUR62040170 Chenopodium quinoa HOM05D002380 ORTHO05D008286 5.7e-22 107.1 64 70.3
Nn1g03403 Nelumbo nucifera HOM05D002380 ORTHO05D008286 5.7e-22 107.1 62 71.0
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 5.7e-22 107.1 63 68.3
Sp4g14960 Schrenkiella parvula HOM05D002380 ORTHO05D008286 7.4e-22 106.7 65 70.8
AL4G28040 Arabidopsis lyrata HOM05D002380 ORTHO05D008286 9.7e-22 106.3 64 71.9
CSS0029680 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D008286 9.7e-22 106.3 63 69.8
CARHR126480 Cardamine hirsuta HOM05D002380 ORTHO05D008286 9.7e-22 106.3 64 71.9
AUR62037919 Chenopodium quinoa HOM05D002380 ORTHO05D008286 1.3e-21 105.9 64 68.8
AUR62044039 Chenopodium quinoa HOM05D002380 ORTHO05D008286 1.3e-21 105.9 64 68.8
DCAR_019750 Daucus carota HOM05D002380 ORTHO05D008286 1.3e-21 105.9 63 71.4
BcaB01g03970 Brassica carinata HOM05D002380 ORTHO05D008286 1.7e-21 105.5 64 71.9
Cc05_g03220 Coffea canephora HOM05D002380 ORTHO05D008286 1.7e-21 105.5 62 69.4
Hma1.2p1_0895F.1_g233700 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 1.7e-21 105.5 64 68.8
MBI19_g40900_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 1.7e-21 105.5 62 67.7
Ciclev10014719m.g Citrus clementina HOM05D002380 ORTHO05D008286 2.2e-21 105.1 64 67.2
Peaxi162Scf00011g02118 Petunia axillaris HOM05D002380 ORTHO05D008286 2.2e-21 105.1 63 68.3
CAN.G855.60 Capsicum annuum HOM05D002380 ORTHO05D008286 2.8e-21 104.8 63 68.3
COL.COLO4_21854 Corchorus olitorius HOM05D002380 ORTHO05D008286 2.8e-21 104.8 64 65.6
Lj1A778T40 Lonicera japonica HOM05D002380 ORTHO05D008286 3.7e-21 104.4 62 69.4
Thecc.01G180100 Theobroma cacao HOM05D002380 ORTHO05D008286 3.7e-21 104.4 64 67.2
Duzib138G0368 Durio zibethinus HOM05D002380 ORTHO05D008286 6.3e-21 103.6 64 65.6
Hma1.2p1_0445F.1_g154520 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 6.3e-21 103.6 64 67.2
Hma1.2p1_0445F.1_g154530 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 6.3e-21 103.6 64 67.2
Sopen01g045360 Solanum pennellii HOM05D002380 ORTHO05D008286 6.3e-21 103.6 63 66.7
PGSC0003DMG400020719 Solanum tuberosum HOM05D002380 ORTHO05D008286 6.3e-21 103.6 63 66.7
Carub.0004s1397 Capsella rubella HOM05D002380 ORTHO05D008286 8.2e-21 103.2 64 70.3
CANSAT64G0203 Cannabis sativa HOM05D002380 ORTHO05D008286 1.1e-20 102.8 65 67.7
SGA_v2.0_scaffold159G37563 Striga asiatica HOM05D002380 ORTHO05D001198 1.1e-20 102.8 63 66.7
Migut.H01235 Erythranthe guttata HOM05D002380 ORTHO05D008286 1.4e-20 102.4 63 66.7
Eucgr.A01100 Eucalyptus grandis HOM05D002380 ORTHO05D008286 1.8e-20 102.1 64 65.6
Solyc01g102950.3 Solanum lycopersicum HOM05D002380 ORTHO05D008286 1.8e-20 102.1 62 66.1
Aa31LG5G4710 Aethionema arabicum HOM05D002380 ORTHO05D008286 2.4e-20 101.7 64 67.2
THA.LOC104826140 Tarenaya hassleriana HOM05D002380 ORTHO05D008286 3.1e-20 101.3 64 68.8
Os08g0422000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D008286 4.1e-20 100.9 62 66.1
ATR0059G008 Amborella trichopoda HOM05D002380 ORTHO05D008286 9.1e-20 99.8 62 59.7
SalBow1G6561 Salvia bowleyana HOM05D002380 ORTHO05D008286 1.2e-19 99.4 64 62.5
CDE04G2212 Ceratophyllum demersum HOM05D002380 ORTHO05D008286 3.4e-19 97.8 62 66.1
SalBow1G4831 Salvia bowleyana HOM05D002380 ORTHO05D008286 1.3e-18 95.9 64 60.9
Lsat_1_v5_gn_5_123621 Lactuca sativa HOM05D002380 ORTHO05D008286 5.0e-18 94.0 62 61.3
HanXRQChr10g0306601 Helianthus annuus HOM05D002380 ORTHO05D008286 1.4e-17 92.4 62 59.7
ECA234G2702 Erigeron canadensis HOM05D002380 ORTHO05D008286 1.6e-16 89.0 62 58.1
HPP92_026432 Vanilla planifolia HOM05D002380 ORTHO05D008286 1.8e-15 85.5 61 55.7
SEGI_31657 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 6.7e-15 83.6 62 54.8
CBR_g12620 Chara braunii HOM05D005350 ORTHO05D008838 8.2e-13 76.6 63 44.4
Mapoly0041s0126 Marchantia polymorpha HOM05D002380 ORTHO05D008286 4.5e-11 70.9 63 46.0
Pp3c11_22720 Physcomitrium patens HOM05D002380 ORTHO05D008286 6.5e-10 67.0 61 45.9
Ca_06119_v3 Cicer arietinum L. HOM05D002380 ORTHO05D008286 8.5e-10 66.6 32 90.6
Haze_12786 Corylus avellana HOM05D002380 ORTHO05D008286 2.5e-09 65.1 41 65.9
Lj5g0008066 Lotus japonicus HOM05D002380 ORTHO05D008286 7.2e-09 63.5 31 90.3
FAN02G0433 Fragaria x ananassa HOM05D002380 ORTHO05D008286 2.1e-08 62.0 32 81.2
MELO3C018839.2 Cucumis melo HOM05D002380 ORTHO05D008286 4.0e-07 57.8 32 78.1


User provided reference genes

Program Settings