Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00564g0001978 Lotus japonicus HOM05D002380 ORTHO05D008286 0.0e+00 1172.1 585 100.0
LjContig00564g0004339 Lotus japonicus HOM05D002380 ORTHO05D008286 0.0e+00 1161.0 585 99.0
Glyma.14G046600 Glycine max HOM05D002380 ORTHO05D008286 0.0e+00 1080.1 585 90.9
Medtr8g465870 Medicago truncatula HOM05D002380 ORTHO05D008286 2.7e-303 1044.6 585 88.5
arahy.Tifrunner.gnm1.ann1.Y9X1U6 Arachis hypogaea HOM05D002380 ORTHO05D008286 4.0e-302 1040.8 590 86.6
VMungo0647G2578 Vigna mungo HOM05D002380 ORTHO05D008286 1.2e-298 1029.2 585 86.7
arahy.Tifrunner.gnm1.ann1.C2B2I7 Arachis hypogaea HOM05D002380 ORTHO05D008286 3.5e-298 1027.7 599 84.8
Phvul.008G211500 Phaseolus vulgaris HOM05D002380 ORTHO05D008286 3.7e-292 1007.7 591 86.3
Ca_06119_v3 Cicer arietinum L. HOM05D002380 ORTHO05D008286 1.3e-273 946.0 553 85.4
Potri.014G156800 Populus trichocarpa HOM05D002380 ORTHO05D008286 1.6e-271 939.1 588 78.1
Gohir.D07G193100 Gossypium hirsutum HOM05D002380 ORTHO05D008286 4.4e-269 931.0 595 77.6
Gohir.A07G186600 Gossypium hirsutum HOM05D002380 ORTHO05D008286 9.9e-269 929.9 595 77.1
Psat0s2606g0080 Pisum sativum HOM05D002380 ORTHO05D008286 2.2e-268 928.7 524 88.5
MD09G1112100 Malus domestica HOM05D002380 ORTHO05D008286 3.7e-268 927.9 586 77.8
Gorai.001G216200 Gossypium raimondii HOM05D002380 ORTHO05D008286 8.3e-268 926.8 595 77.3
Duzib138G0368 Durio zibethinus HOM05D002380 ORTHO05D008286 4.1e-267 924.5 590 76.6
QL08p031162 Quercus lobata HOM05D002380 ORTHO05D008286 7.1e-267 923.7 585 78.6
Ciclev10014719m.g Citrus clementina HOM05D002380 ORTHO05D008286 1.6e-266 922.5 586 77.3
Cfa014331 Carpinus fangiana HOM05D002380 ORTHO05D008286 3.9e-265 917.9 587 77.0
CiPaw.04G112000 Carya illinoinensis HOM05D002380 ORTHO05D008286 4.3e-264 914.4 586 77.8
CSS0029680 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D008286 9.5e-264 913.3 575 77.9
FvH4_6g42610 Fragaria vesca HOM05D002380 ORTHO05D008286 1.4e-262 909.4 587 75.8
TWI18G0959 Tripterygium wilfordii HOM05D002380 ORTHO05D008286 4.0e-262 907.9 585 75.6
GSVIVG01030484001 Vitis vinifera HOM05D002380 ORTHO05D008286 2.0e-261 905.6 586 75.9
Sabra14G0118600 Salix brachista HOM05D002380 ORTHO05D008286 5.8e-261 904.0 667 68.8
RcHm_v2.0_Chr2g0158461 Rosa chinensis HOM05D002380 ORTHO05D008286 1.3e-260 902.9 587 75.5
Actinidia13740 Actinidia chinensis HOM05D002380 ORTHO05D008286 4.9e-260 901.0 556 78.4
Prupe.3G212600 Prunus persica HOM05D002380 ORTHO05D008286 6.4e-260 900.6 538 81.8
Lalb_Chr04g0249901 Lupinus albus HOM05D002380 ORTHO05D008286 4.1e-259 897.9 504 86.7
Hma1.2p1_0445F.1_g154520 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 7.1e-259 897.1 556 78.8
Thecc.01G180100 Theobroma cacao HOM05D002380 ORTHO05D008286 1.0e-257 893.3 588 75.2
HanXRQChr10g0306601 Helianthus annuus HOM05D002380 ORTHO05D008286 1.3e-257 892.9 587 75.1
FAN05G1087 Fragaria x ananassa HOM05D002380 ORTHO05D008286 3.0e-257 891.7 616 72.1
CANSAT64G0203 Cannabis sativa HOM05D002380 ORTHO05D008286 5.1e-257 891.0 591 74.1
PSO541G2284 Papaver somniferum HOM05D002380 ORTHO05D008286 8.6e-257 890.2 578 74.6
Nn1g03403 Nelumbo nucifera HOM05D002380 ORTHO05D008286 4.3e-256 887.9 585 74.2
CAN.G855.60 Capsicum annuum HOM05D002380 ORTHO05D008286 4.7e-255 884.4 585 74.4
Atru.chr6.3236 Acer truncatum HOM05D002380 ORTHO05D008286 6.9e-254 880.6 590 74.9
Sopen01g045360 Solanum pennellii HOM05D002380 ORTHO05D008286 9.0e-254 880.2 585 73.7
FAN14G4830 Fragaria x ananassa HOM05D002380 ORTHO05D008286 2.6e-253 878.6 611 72.2
Cc05_g03220 Coffea canephora HOM05D002380 ORTHO05D008286 3.4e-253 878.2 565 75.2
ClCG02G002150 Citrullus lanatus HOM05D002380 ORTHO05D008286 1.3e-252 876.3 564 76.1
ECA234G2702 Erigeron canadensis HOM05D002380 ORTHO05D008286 1.7e-252 875.9 588 73.0
Solyc01g102950.3 Solanum lycopersicum HOM05D002380 ORTHO05D008286 2.2e-252 875.5 557 75.4
SalBow1G6561 Salvia bowleyana HOM05D002380 ORTHO05D008286 2.9e-252 875.2 586 73.2
Sed0027871 Sechium edule HOM05D002380 ORTHO05D008286 4.9e-252 874.4 563 76.0
SalBow1G4831 Salvia bowleyana HOM05D002380 ORTHO05D008286 1.4e-251 872.8 586 73.2
CsaV3_7G003340 Cucumis sativus L. HOM05D002380 ORTHO05D008286 3.5e-250 868.2 553 75.8
Migut.H01235 Erythranthe guttata HOM05D002380 ORTHO05D008286 7.8e-250 867.1 564 75.7
PGR042G3960 Punica granatum HOM05D002380 ORTHO05D008286 3.0e-249 865.1 593 72.7
Eucgr.A01100 Eucalyptus grandis HOM05D002380 ORTHO05D008286 3.9e-249 864.8 562 74.2
PSO675G4452 Papaver somniferum HOM05D002380 ORTHO05D008286 5.6e-248 860.9 578 73.0
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 6.9e-246 854.0 586 71.7
AUR62037919 Chenopodium quinoa HOM05D002380 ORTHO05D008286 2.6e-245 852.0 582 71.1
AUR62040170 Chenopodium quinoa HOM05D002380 ORTHO05D008286 8.4e-244 847.0 582 71.1
Lj1A778T40 Lonicera japonica HOM05D002380 ORTHO05D008286 1.4e-243 846.3 649 67.5
Carub.0004s1397 Capsella rubella HOM05D002380 ORTHO05D008286 2.4e-243 845.5 586 70.3
CARHR126480 Cardamine hirsuta HOM05D002380 ORTHO05D008286 7.1e-243 844.0 586 69.8
A03p18220 Brassica napus HOM05D002380 ORTHO05D008286 9.3e-243 843.6 586 70.0
BraA03t11082Z Brassica rapa HOM05D002380 ORTHO05D008286 2.7e-242 842.0 586 70.0
Sp4g14960 Schrenkiella parvula HOM05D002380 ORTHO05D008286 4.6e-242 841.3 586 69.8
BolC3t14508H Brassica oleracea HOM05D002380 ORTHO05D008286 1.0e-241 840.1 587 69.8
BcaC01g05900 Brassica carinata HOM05D002380 ORTHO05D008286 3.0e-241 838.6 587 69.7
C03p21270 Brassica napus HOM05D002380 ORTHO05D008286 3.9e-241 838.2 587 69.5
Thhalv10016422m.g Eutrema salsugineum HOM05D002380 ORTHO05D008286 6.7e-241 837.4 586 70.0
Aa31LG5G4710 Aethionema arabicum HOM05D002380 ORTHO05D008286 5.6e-240 834.3 589 68.8
BcaB01g03970 Brassica carinata HOM05D002380 ORTHO05D008286 8.1e-239 830.5 588 68.7
THA.LOC104826140 Tarenaya hassleriana HOM05D002380 ORTHO05D008286 4.0e-238 828.2 556 72.5
AL4G28040 Arabidopsis lyrata HOM05D002380 ORTHO05D008286 6.9e-238 827.4 540 73.3
Peaxi162Scf00011g02118 Petunia axillaris HOM05D002380 ORTHO05D008286 6.9e-238 827.4 600 70.0
Rhsim06G0166100 Rhododendron simsii HOM05D002380 ORTHO05D008286 1.2e-237 826.6 557 72.5
DCAR_019750 Daucus carota HOM05D002380 ORTHO05D008286 1.8e-233 812.8 562 71.5
CDE04G2212 Ceratophyllum demersum HOM05D002380 ORTHO05D008286 3.0e-233 812.0 586 67.9
Os08g0422000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D008286 1.1e-227 793.5 544 70.4
Lsat_1_v5_gn_5_123621 Lactuca sativa HOM05D002380 ORTHO05D008286 2.7e-226 788.9 555 71.0
TAR626G1235 Trochodendron aralioides HOM05D002380 ORTHO05D008286 1.3e-225 786.6 507 76.9
ATR0059G008 Amborella trichopoda HOM05D002380 ORTHO05D008286 8.2e-223 777.3 551 66.8
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 3.4e-221 771.9 586 66.0
AUR62044039 Chenopodium quinoa HOM05D002380 ORTHO05D008286 2.9e-220 768.8 582 66.0
EL10Ac7g16733 Beta vulgaris HOM05D002380 ORTHO05D008286 4.2e-219 765.0 559 67.3
Sc21g0001190 Simmondsia chinensis HOM05D002380 ORTHO05D008286 1.5e-213 746.5 521 71.2
Manes.12G071600 Manihot esculenta HOM05D002380 ORTHO05D008286 7.2e-211 737.6 493 74.2
vmacro12176 Vaccinium macrocarpon HOM05D002380 ORTHO05D008286 7.4e-208 727.6 584 64.4
MELO3C018839.2 Cucumis melo HOM05D002380 ORTHO05D008286 4.8e-207 724.9 512 70.7
Haze_12786 Corylus avellana HOM05D002380 ORTHO05D008286 2.0e-205 719.5 585 65.1
HPP92_026432 Vanilla planifolia HOM05D002380 ORTHO05D008286 9.4e-203 710.7 491 67.6
Hma1.2p1_0445F.1_g154530 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 7.4e-200 701.0 539 66.4
Mapoly0041s0126 Marchantia polymorpha HOM05D002380 ORTHO05D008286 2.1e-194 682.9 543 59.3
Pp3c11_22720 Physcomitrium patens HOM05D002380 ORTHO05D008286 5.7e-192 674.9 549 58.8
Dinv08737 Davidia involucrata HOM05D002380 ORTHO05D008286 8.0e-186 654.4 455 74.5
Aqoxy1G02993 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 1.4e-177 627.1 573 57.6
AagrBONN_evm.TU.Sc2ySwM_368.2332 Anthoceros agrestis HOM05D002380 ORTHO05D008286 4.7e-170 602.1 522 56.9
FAN02G0433 Fragaria x ananassa HOM05D002380 ORTHO05D008286 9.5e-163 577.8 562 56.9
TPR.G26188 Trifolium pratense HOM05D002380 ORTHO05D008286 2.2e-159 566.6 335 84.5
Hma1.2p1_0895F.1_g233700 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 9.5e-155 551.2 319 82.1
Cpa.g.sc132.5 Carica papaya HOM05D002380 ORTHO05D008286 4.7e-154 548.9 382 70.7
COL.COLO4_21855 Corchorus olitorius HOM05D002380 ORTHO05D008286 4.7e-154 548.9 335 79.1
PGSC0003DMG400020719 Solanum tuberosum HOM05D002380 ORTHO05D008286 5.1e-148 528.9 309 79.0
Hund20419 Selenicereus undatus HOM05D002380 ORTHO05D008286 1.5e-144 517.3 358 68.7
SGA_v2.0_scaffold159G37563 Striga asiatica HOM05D002380 ORTHO05D001198 4.4e-144 515.8 563 51.0
AT2G32640 Arabidopsis thaliana HOM05D002380 ORTHO05D008286 5.6e-139 498.8 382 64.1
Zm00001eb179140 Zea mays HOM05D002380 ORTHO05D008286 4.4e-136 489.2 447 56.6
Cre06.g264250 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 1.0e-132 478.0 572 43.5
Ah.15g091260 Amaranthus hybridus HOM05D002380 ORTHO05D008286 7.4e-123 445.3 417 56.6
SMO111G0098 Selaginella moellendorffii HOM05D002380 ORTHO05D008286 8.2e-106 388.7 365 52.9
Cpa.g.sc132.4 Carica papaya HOM05D002380 ORTHO05D008286 3.6e-101 373.2 206 85.4
Cre04.g221550 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 5.9e-96 355.9 627 35.2
unitig_62.g23230 Utricularia gibba HOM05D002380 ORTHO05D008286 2.0e-88 330.9 246 67.1
MBI19_g44049_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 3.8e-87 326.6 235 68.5
MBI19_g40900_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 8.9e-60 235.7 140 76.4
SEGI_31657 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 1.7e-58 231.5 160 66.9
COL.COLO4_21854 Corchorus olitorius HOM05D002380 ORTHO05D008286 1.2e-45 188.7 130 68.5
CBR_g8452 Chara braunii HOM05D002380 ORTHO05D008286 9.8e-43 179.1 149 55.0
SEGI_17941 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 3.2e-41 174.1 158 52.5
Aqoxy1G02984 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 1.1e-36 159.1 99 73.7
MBI19_g42463_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 1.6e-32 145.2 160 51.2
LjContig00564g0015808 Lotus japonicus HOM05D002380 ORTHO05D008286 1.5e-30 138.7 64 98.4
Hund20420 Selenicereus undatus HOM05D002380 ORTHO05D010615 1.1e-28 132.5 85 75.3
CBR_g12620 Chara braunii HOM05D005350 ORTHO05D008838 9.9e-27 125.9 100 52.0
SEGI_28059 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 3.0e-23 114.4 69 75.4
Gohir.A07G186850 Gossypium hirsutum HOM05D002380 ORTHO05D026288 1.1e-20 105.9 71 76.1
Actinidia09730 Actinidia chinensis HOM05D002380 ORTHO05D008286 1.7e-18 98.6 105 50.5
Lalb_Chr04g0249911 Lupinus albus HOM05D002380 ORTHO05D026288 5.4e-17 93.6 80 66.2
CBR_g8454 Chara braunii HOM05D002380 ORTHO05D008286 6.6e-15 86.7 92 43.5
Actinidia09729 Actinidia chinensis HOM05D002380 ORTHO05D026288 1.1e-14 85.9 54 79.6
SEGI_40123 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 3.4e-11 74.3 42 81.0
Lj1P772T14 Lonicera japonica HOM05D002380 ORTHO05D008286 1.9e-09 68.6 83 53.0
Lj5g0008066 Lotus japonicus HOM05D002380 ORTHO05D008286 3.5e-08 64.3 35 80.0
CAN.G96.10 Capsicum annuum HOM05D002380 ORTHO05D026288 6.0e-08 63.5 45 64.4
CBR_g8455 Chara braunii HOM05D002380 ORTHO05D008286 9.6e-06 56.2 57 54.4


User provided reference genes

Program Settings