Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00564g0001423 Lotus japonicus HOM05D004351 ORTHO05D005196 5.5e-124 447.6 217 100.0
LjContig00564g0010016 Lotus japonicus HOM05D004351 ORTHO05D005196 5.2e-106 387.9 209 90.4
Ca_06202_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 3.3e-84 315.5 193 78.8
Ca_06205_v3 Cicer arietinum L. HOM05D004351 ORTHO05D005196 3.3e-84 315.5 193 78.8
TPR.G16412 Trifolium pratense HOM05D004351 ORTHO05D005196 2.3e-82 309.3 194 78.9
Medtr5g089280 Medicago truncatula HOM05D004351 ORTHO05D005196 5.8e-81 304.7 203 75.9
Psat0s4007g0120 Pisum sativum HOM05D004351 ORTHO05D005196 4.1e-79 298.5 170 82.9
Psat0s6670g0080 Pisum sativum HOM05D004351 ORTHO05D005196 5.4e-79 298.1 171 82.5
Glyma.15G055500 Glycine max HOM05D004351 ORTHO05D005196 4.7e-75 285.0 200 73.0
Duzib168G2208 Durio zibethinus HOM05D004351 ORTHO05D005196 2.3e-74 282.7 196 68.9
Lalb_Chr17g0347771 Lupinus albus HOM05D004351 ORTHO05D005196 2.3e-74 282.7 190 73.7
Thecc.09G247500 Theobroma cacao HOM05D004351 ORTHO05D005196 6.8e-74 281.2 197 68.0
Haze_23254 Corylus avellana HOM05D004351 ORTHO05D005196 2.0e-73 279.6 196 71.9
LjContig00564g0013946 Lotus japonicus HOM05D004351 ORTHO05D005196 2.0e-73 279.6 173 76.9
Prupe.4G264000 Prunus persica HOM05D004351 ORTHO05D005196 3.4e-73 278.9 190 71.1
Actinidia06976 Actinidia chinensis HOM05D004351 ORTHO05D005196 5.8e-73 278.1 193 70.5
QL05p016402 Quercus lobata HOM05D004351 ORTHO05D005196 5.8e-73 278.1 190 72.1
TWI31G0625 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 5.8e-73 278.1 194 71.1
ClCG02G022760 Citrullus lanatus HOM05D004351 ORTHO05D005196 7.5e-73 277.7 189 70.4
Gorai.001G133200 Gossypium raimondii HOM05D004351 ORTHO05D005196 7.5e-73 277.7 193 68.9
VMungo0540G1132 Vigna mungo HOM05D004351 ORTHO05D005196 7.5e-73 277.7 200 73.0
TPR.G16392 Trifolium pratense HOM05D004351 ORTHO05D005196 1.7e-72 276.6 199 69.3
MELO3C014554.2 Cucumis melo HOM05D004351 ORTHO05D005196 2.2e-72 276.2 189 70.4
Gohir.D07G123400 Gossypium hirsutum HOM05D004351 ORTHO05D005196 2.2e-72 276.2 193 68.4
Hma1.2p1_0460F.1_g157460 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 3.7e-72 275.4 179 70.4
Ciclev10014772m.g Citrus clementina HOM05D004351 ORTHO05D005196 4.9e-72 275.0 205 68.3
Potri.009G067700 Populus trichocarpa HOM05D004351 ORTHO05D005196 4.9e-72 275.0 195 70.3
PGR119G2369 Punica granatum HOM05D004351 ORTHO05D005196 4.9e-72 275.0 196 68.4
CSS0023003 Camellia sinensis var. sinensis HOM05D004351 ORTHO05D005196 6.4e-72 274.6 197 68.5
Sabra09G0050700 Salix brachista HOM05D004351 ORTHO05D005196 8.3e-72 274.2 195 70.8
Medtr5g089200 Medicago truncatula HOM05D004351 ORTHO05D005196 1.4e-71 273.5 196 69.9
Phvul.006G204400 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 1.4e-71 273.5 205 71.7
Potri.001G273400 Populus trichocarpa HOM05D004351 ORTHO05D005196 2.4e-71 272.7 198 69.7
Dinv36161 Davidia involucrata HOM05D004351 ORTHO05D005196 3.2e-71 272.3 194 68.6
Manes.02G136500 Manihot esculenta HOM05D004351 ORTHO05D005196 3.2e-71 272.3 200 67.0
arahy.Tifrunner.gnm1.ann1.3AG2SN Arachis hypogaea HOM05D004351 ORTHO05D005196 9.2e-71 270.8 191 69.6
SalBow6G0501 Salvia bowleyana HOM05D004351 ORTHO05D005196 9.2e-71 270.8 187 70.6
CsaV3_6G038890 Cucumis sativus L. HOM05D004351 ORTHO05D005196 1.2e-70 270.4 189 68.8
arahy.Tifrunner.gnm1.ann1.A6ZB5M Arachis hypogaea HOM05D004351 ORTHO05D005196 2.7e-70 269.2 191 69.1
Cfa009892 Carpinus fangiana HOM05D004351 ORTHO05D005196 3.5e-70 268.9 191 71.2
Oeu013460.1 Olea europaea HOM05D004351 ORTHO05D005196 3.5e-70 268.9 176 71.0
CiPaw.13G149200 Carya illinoinensis HOM05D004351 ORTHO05D005196 4.6e-70 268.5 211 64.9
Rhsim13G0207700 Rhododendron simsii HOM05D004351 ORTHO05D005196 4.6e-70 268.5 193 68.4
Prupe.4G264100 Prunus persica HOM05D004351 ORTHO05D005196 6.0e-70 268.1 190 69.5
COL.COLO4_24484 Corchorus olitorius HOM05D004351 ORTHO05D005196 7.8e-70 267.7 202 65.3
Rhsim13G0210300 Rhododendron simsii HOM05D004351 ORTHO05D005196 7.8e-70 267.7 203 65.5
TWI79G1476 Tripterygium wilfordii HOM05D004351 ORTHO05D005196 7.8e-70 267.7 194 68.6
Cfa009891 Carpinus fangiana HOM05D004351 ORTHO05D005196 1.7e-69 266.5 191 69.1
MSTRG.18468 Avicennia marina HOM05D004351 ORTHO05D005196 2.3e-69 266.2 172 70.9
Psat2g020840 Pisum sativum HOM05D004351 ORTHO05D005196 3.0e-69 265.8 195 69.7
Actinidia24469 Actinidia chinensis HOM05D004351 ORTHO05D005196 6.6e-69 264.6 191 68.6
GSVIVG01037327001 Vitis vinifera HOM05D004351 ORTHO05D005196 1.1e-68 263.8 198 65.7
Ah.06g194690 Amaranthus hybridus HOM05D004351 ORTHO05D005196 1.9e-68 263.1 191 64.9
A10p25600 Brassica napus HOM05D004351 ORTHO05D005196 1.9e-68 263.1 208 62.5
PSO339G1418 Papaver somniferum HOM05D004351 ORTHO05D005196 1.9e-68 263.1 195 66.7
CANSAT80G2609 Cannabis sativa HOM05D004351 ORTHO05D005196 2.5e-68 262.7 194 66.0
Eucgr.J00682 Eucalyptus grandis HOM05D004351 ORTHO05D005196 2.5e-68 262.7 190 67.4
Aa31LG3G15030 Aethionema arabicum HOM05D004351 ORTHO05D005196 3.3e-68 262.3 194 64.4
RcHm_v2.0_Chr5g0050371 Rosa chinensis HOM05D004351 ORTHO05D005196 3.3e-68 262.3 194 66.5
VMungo0647G2253 Vigna mungo HOM05D004351 ORTHO05D005196 3.3e-68 262.3 200 66.0
QL01p016827 Quercus lobata HOM05D004351 ORTHO05D005196 4.3e-68 261.9 190 68.4
Cpa.g.sc34.180 Carica papaya HOM05D004351 ORTHO05D005196 5.6e-68 261.5 193 65.8
Gohir.A07G119100 Gossypium hirsutum HOM05D004351 ORTHO05D005196 5.6e-68 261.5 197 65.0
Nn7g36761 Nelumbo nucifera HOM05D004351 ORTHO05D005196 7.3e-68 261.2 192 69.8
THA.LOC104811202 Tarenaya hassleriana HOM05D004351 ORTHO05D005196 7.3e-68 261.2 185 66.5
Migut.D00673 Erythranthe guttata HOM05D004351 ORTHO05D005196 9.5e-68 260.8 191 66.5
PGR119G0622 Punica granatum HOM05D004351 ORTHO05D005196 1.6e-67 260.0 192 64.6
Nitab4.5_0009266g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 2.1e-67 259.6 194 63.9
TAR633G2420 Trochodendron aralioides HOM05D004351 ORTHO05D005196 2.8e-67 259.2 191 67.5
Glyma.02G278600 Glycine max HOM05D004351 ORTHO05D005196 3.6e-67 258.8 197 69.5
CAN.G468.6 Capsicum annuum HOM05D004351 ORTHO05D005196 4.7e-67 258.5 195 64.6
AUR62006553 Chenopodium quinoa HOM05D004351 ORTHO05D005196 4.7e-67 258.5 194 64.9
Atru.chr3.3000 Acer truncatum HOM05D004351 ORTHO05D005196 1.1e-66 257.3 191 63.9
AL6G22990 Arabidopsis lyrata HOM05D004351 ORTHO05D005196 1.1e-66 257.3 194 65.5
AT5G12200 Arabidopsis thaliana HOM05D004351 ORTHO05D005196 1.1e-66 257.3 192 64.6
BraA10t44627Z Brassica rapa HOM05D004351 ORTHO05D005196 1.1e-66 257.3 208 61.5
CiPaw.14G111600 Carya illinoinensis HOM05D004351 ORTHO05D005196 1.1e-66 257.3 197 66.0
Glyma.14G036000 Glycine max HOM05D004351 ORTHO05D005196 1.1e-66 257.3 197 69.5
CARHR200920 Cardamine hirsuta HOM05D004351 ORTHO05D005196 1.4e-66 256.9 194 66.5
Lj2C622G21 Lonicera japonica HOM05D004351 ORTHO05D005196 1.4e-66 256.9 180 68.9
Sed0012563 Sechium edule HOM05D004351 ORTHO05D005196 1.4e-66 256.9 205 63.9
SGA_v2.0_scaffold8G04539 Striga asiatica HOM05D004351 ORTHO05D005196 1.8e-66 256.5 184 68.5
Glyma.08G177502 Glycine max HOM05D004351 ORTHO05D005196 2.3e-66 256.1 184 70.1
Cc00_g05720 Coffea canephora HOM05D004351 ORTHO05D005196 4.0e-66 255.4 188 61.2
Thhalv10013212m.g Eutrema salsugineum HOM05D004351 ORTHO05D005196 4.0e-66 255.4 194 63.9
Sc09g0001080 Simmondsia chinensis HOM05D004351 ORTHO05D005196 6.8e-66 254.6 191 66.0
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 8.9e-66 254.2 196 62.8
Cc00_g05700 Coffea canephora HOM05D004351 ORTHO05D005196 8.9e-66 254.2 191 63.4
Sopen11g024720 Solanum pennellii HOM05D004351 ORTHO05D005196 8.9e-66 254.2 191 66.0
Solyc11g064920.2 Solanum lycopersicum HOM05D004351 ORTHO05D005196 1.2e-65 253.8 189 66.7
FAN21G2561 Fragaria x ananassa HOM05D004351 ORTHO05D005196 1.5e-65 253.4 194 64.9
MD03G1164800 Malus domestica HOM05D004351 ORTHO05D005196 2.6e-65 252.7 195 62.1
Sp6g31440 Schrenkiella parvula HOM05D004351 ORTHO05D005196 3.4e-65 252.3 195 64.6
FvH4_3g27770 Fragaria vesca HOM05D004351 ORTHO05D005196 5.8e-65 251.5 201 63.7
Peaxi162Scf00004g04314 Petunia axillaris HOM05D004351 ORTHO05D005196 5.8e-65 251.5 170 69.4
C09p64690 Brassica napus HOM05D004351 ORTHO05D005196 7.6e-65 251.1 196 62.8
unitig_62.g23874 Utricularia gibba HOM05D004351 ORTHO05D005196 9.9e-65 250.8 173 64.2
Carub.0006s1070 Capsella rubella HOM05D004351 ORTHO05D005196 1.3e-64 250.4 192 64.6
Gohir.A08G010200 Gossypium hirsutum HOM05D004351 ORTHO05D005196 4.9e-64 248.4 199 64.8
Nitab4.5_0006764g0060 Nicotiana tabacum HOM05D004351 ORTHO05D005196 4.9e-64 248.4 205 60.5
BcaNung06879 Brassica carinata HOM05D004351 ORTHO05D005196 1.1e-63 247.3 199 63.3
Phvul.008G202200 Phaseolus vulgaris HOM05D004351 ORTHO05D005196 1.1e-63 247.3 151 76.2
HPP92_018205 Vanilla planifolia HOM05D004351 ORTHO05D005196 5.4e-63 245.0 195 64.6
Lj2A623G23 Lonicera japonica HOM05D004351 ORTHO05D005196 7.1e-63 244.6 171 69.0
DCAR_023830 Daucus carota HOM05D004351 ORTHO05D005196 9.2e-63 244.2 194 62.4
ATR1096G054 Amborella trichopoda HOM05D004351 ORTHO05D005196 1.2e-62 243.8 173 67.1
Aqoxy2G00403 Aquilegia oxysepala HOM05D004351 ORTHO05D005196 1.6e-62 243.4 175 68.6
HanXRQChr13g0418801 Helianthus annuus HOM05D004351 ORTHO05D005196 3.5e-62 242.3 172 66.3
ECA240G3738 Erigeron canadensis HOM05D004351 ORTHO05D005196 4.6e-62 241.9 194 61.9
Hund21970 Selenicereus undatus HOM05D004351 ORTHO05D005196 7.8e-62 241.1 176 67.0
EL10Ac4g10103 Beta vulgaris HOM05D004351 ORTHO05D005196 1.3e-61 240.4 195 61.0
FAN11G3899 Fragaria x ananassa HOM05D004351 ORTHO05D005196 1.7e-61 240.0 201 62.7
Gohir.D08G020300 Gossypium hirsutum HOM05D004351 ORTHO05D005196 7.3e-60 234.6 199 62.8
Lsat_1_v5_gn_3_110020 Lactuca sativa HOM05D004351 ORTHO05D005196 1.1e-58 230.7 185 63.2
Zm00001eb150370 Zea mays HOM05D004351 ORTHO05D005196 5.2e-58 228.4 179 63.1
SEGI_39462 Sequoiadendron giganteum HOM05D004351 ORTHO05D005196 1.5e-57 226.9 169 65.7
Os01g0807900 Oryza sativa ssp. japonica HOM05D004351 ORTHO05D005196 5.8e-57 224.9 175 62.9
Dinv15025 Davidia involucrata HOM05D004351 ORTHO05D005196 2.1e-54 216.5 194 56.7
CDE09G1005 Ceratophyllum demersum HOM05D004351 ORTHO05D005196 5.1e-53 211.8 200 58.0
SMO351G0214 Selaginella moellendorffii HOM05D004351 ORTHO05D005196 3.1e-50 202.6 158 61.4
Mapoly0086s0068 Marchantia polymorpha HOM05D004351 ORTHO05D005196 1.5e-49 200.3 190 54.2
Eucgr.J00683 Eucalyptus grandis HOM05D004351 ORTHO05D005196 4.2e-47 192.2 188 57.4
Hma1.2p1_0460F.1_g157450 Hydrangea macrophylla HOM05D004351 ORTHO05D005196 3.0e-45 186.0 116 71.6
TPR.G16403 Trifolium pratense HOM05D004351 ORTHO05D005196 2.5e-44 183.0 114 72.8
AUR62000207 Chenopodium quinoa HOM05D004351 ORTHO05D005196 4.8e-43 178.7 114 69.3
Psat6g063440 Pisum sativum HOM05D004351 ORTHO05D005196 1.7e-40 170.2 96 81.2
Gorai.004G014900 Gossypium raimondii HOM05D004351 ORTHO05D005196 1.4e-39 167.2 108 72.2
vmacro04976 Vaccinium macrocarpon HOM05D004351 ORTHO05D005196 3.2e-39 166.0 99 74.7
Sed0017489 Sechium edule HOM05D004351 ORTHO05D005196 1.6e-38 163.7 192 50.0
PRCOL_00004379 Prasinoderma coloniale HOM05D004351 ORTHO05D005196 1.3e-37 160.6 151 52.3
CBR_g36941 Chara braunii HOM05D004351 ORTHO05D005196 2.3e-37 159.8 144 55.6
Cre02.g097000 Chlamydomonas reinhardtii HOM05D004351 ORTHO05D005196 1.1e-36 157.5 158 46.2
AagrBONN_evm.TU.Sc2ySwM_344.922 Anthoceros agrestis HOM05D004351 ORTHO05D005196 5.8e-33 145.2 99 66.7
Psat6g063400 Pisum sativum HOM05D013666 ORTHO05D015141 3.9e-29 132.5 86 77.9
MCO02G098 Micromonas commoda HOM05D004351 ORTHO05D005196 7.4e-28 128.3 146 43.2
Haze_26731 Corylus avellana HOM05D004351 ORTHO05D005196 2.8e-27 126.3 148 48.6
Psat2g075720 Pisum sativum HOM05D000058 ORTHO05D002699 2.4e-26 123.2 81 70.4
Haze_26934 Corylus avellana HOM05D004351 ORTHO05D005196 2.5e-23 113.2 160 39.4
Sc09g0005690 Simmondsia chinensis HOM05D004351 ORTHO05D005196 4.2e-23 112.5 84 63.1
Pp3c24_19320 Physcomitrium patens HOM05D004351 ORTHO05D005196 1.6e-22 110.5 78 57.7
Psat2g075680 Pisum sativum HOM05D004351 ORTHO05D005196 6.7e-21 105.1 60 80.0
TAR636G1014 Trochodendron aralioides HOM05D004351 ORTHO05D005196 1.4e-15 87.4 84 61.9
TAR636G2603 Trochodendron aralioides HOM05D004351 ORTHO05D005196 1.0e-13 81.3 48 70.8
MBI13_g08984_MAGBIO Magnolia biondii HOM05D004351 ORTHO05D005196 1.5e-09 67.4 51 64.7
MBI13_g09228_MAGBIO Magnolia biondii HOM05D004351 ORTHO05D005196 3.4e-09 66.2 79 48.1
TAR636G0959 Trochodendron aralioides HOM05D004351 ORTHO05D005196 2.2e-08 63.5 56 60.7
QL03p008751 Quercus lobata HOM05D004351 ORTHO05D005196 3.8e-08 62.8 34 73.5
QL06p042225 Quercus lobata HOM05D004351 ORTHO05D005196 4.2e-07 59.3 34 67.6


User provided reference genes

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