Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
LjContig00489g0025793 Lotus japonicus HOM05D008622 ORTHO05D010757 8.8e-37 156.4 75 100.0
CAN.G612.10 Capsicum annuum HOM05D008622 ORTHO05D010757 4.7e-30 134.0 74 90.5
CAN.G877.8 Capsicum annuum HOM05D008622 ORTHO05D010757 4.7e-30 134.0 74 90.5
Peaxi162Scf00110g00044 Petunia axillaris HOM05D008622 ORTHO05D010757 3.9e-29 131.0 74 89.2
PGR111G0016 Punica granatum HOM05D008622 ORTHO05D010757 1.3e-27 125.9 74 83.8
Gohir.1Z050166 Gossypium hirsutum HOM05D008622 ORTHO05D010757 1.7e-27 125.6 74 85.1
PSO548G0027 Papaver somniferum HOM05D008622 ORTHO05D010757 9.1e-26 119.8 74 81.1
Sed0001678 Sechium edule HOM05D008622 ORTHO05D010757 9.1e-26 119.8 69 84.1
Sed0011032 Sechium edule HOM05D008622 ORTHO05D010757 9.1e-26 119.8 69 84.1
Sed0018360 Sechium edule HOM05D008622 ORTHO05D010757 9.1e-26 119.8 69 84.1
Nn020s41492 Nelumbo nucifera HOM05D008622 ORTHO05D010757 3.5e-25 117.9 69 84.1
Glyma.16G088900 Glycine max HOM05D008622 ORTHO05D010757 1.0e-24 116.3 75 76.0
MELO3C028501.2 Cucumis melo HOM05D008622 ORTHO05D010757 1.7e-24 115.5 61 88.5
HanXRQChr00c0496g0575161 Helianthus annuus HOM05D008622 ORTHO05D010757 1.7e-24 115.5 63 88.9
LjContig00318g0003846 Lotus japonicus HOM05D008622 ORTHO05D010757 6.5e-24 113.6 61 86.9
DCAR_032466 Daucus carota HOM05D008622 ORTHO05D010757 1.4e-23 112.5 58 89.7
C06p21400 Brassica napus HOM05D008622 ORTHO05D010757 3.2e-23 111.3 74 75.7
BolSC37t60776H Brassica oleracea HOM05D008622 ORTHO05D010757 3.2e-23 111.3 74 75.7
BolSC45t60930H Brassica oleracea HOM05D008622 ORTHO05D010757 3.2e-23 111.3 74 75.7
BraSC25t45888Z Brassica rapa HOM05D008622 ORTHO05D010757 3.2e-23 111.3 74 75.7
BraSC59t46518Z Brassica rapa HOM05D008622 ORTHO05D010757 3.2e-23 111.3 74 75.7
Gohir.A12G078500 Gossypium hirsutum HOM05D008622 ORTHO05D010757 2.7e-22 108.2 68 79.4
CiPaw.06G085000 Carya illinoinensis HOM05D008622 ORTHO05D010757 3.6e-22 107.8 73 74.0
Migut.H01168 Erythranthe guttata HOM05D008622 ORTHO05D010757 1.4e-21 105.9 66 78.8
Gorai.012G044100 Gossypium raimondii HOM05D008622 ORTHO05D010757 2.3e-21 105.1 63 81.0
CARHR281850 Cardamine hirsuta HOM05D008622 ORTHO05D010757 1.1e-20 102.8 60 81.7
Gorai.001G180700 Gossypium raimondii HOM05D008622 ORTHO05D010757 2.0e-20 102.1 61 82.0
Thhalv10028241m.g Eutrema salsugineum HOM05D008622 ORTHO05D010757 1.3e-19 99.4 59 81.4
Gohir.D08G095680 Gossypium hirsutum HOM05D008622 ORTHO05D010757 1.7e-19 99.0 63 76.2
ATCG00050 Arabidopsis thaliana HOM05D008622 ORTHO05D010757 4.1e-18 94.4 60 75.0
Gohir.D06G105260 Gossypium hirsutum HOM05D008622 ORTHO05D010757 9.1e-18 93.2 61 75.4
Gorai.003G055400 Gossypium raimondii HOM05D008622 ORTHO05D010757 1.3e-16 89.4 46 91.3
Thhalv10001859m.g Eutrema salsugineum HOM05D008622 ORTHO05D010757 2.2e-16 88.6 49 85.7
Glyma.15G248550 Glycine max HOM05D008622 ORTHO05D010757 6.5e-16 87.0 46 87.0
BolSC49t61205H Brassica oleracea HOM05D008622 ORTHO05D010757 1.2e-14 82.8 45 84.4
BolSC44t60843H Brassica oleracea HOM05D008622 ORTHO05D010757 3.6e-14 81.3 61 62.3
BolSC45t60884H Brassica oleracea HOM05D008622 ORTHO05D010757 3.6e-14 81.3 61 62.3
BolSC46t60979H Brassica oleracea HOM05D008622 ORTHO05D010757 3.6e-14 81.3 61 62.3
Sed0025419 Sechium edule HOM05D008622 ORTHO05D010757 3.6e-14 81.3 54 70.4
BolSC29t60522H Brassica oleracea HOM05D008622 ORTHO05D010757 4.7e-14 80.9 46 80.4
Nitab4.5_0016174g0030 Nicotiana tabacum HOM05D001325 ORTHO05D001540 1.0e-13 79.7 56 71.4
Solyc02g011995.1 Solanum lycopersicum HOM05D008622 ORTHO05D010757 1.8e-13 79.0 52 76.9
CiPaw.01G059700 Carya illinoinensis HOM05D008622 ORTHO05D010757 3.0e-13 78.2 48 75.0
ClCG00G002380 Citrullus lanatus HOM05D008622 ORTHO05D010757 4.4e-12 74.3 36 94.4
Nitab4.5_0004864g0050 Nicotiana tabacum HOM05D000540 ORTHO05D000681 1.7e-11 72.4 42 83.3
MCO08G152 Micromonas commoda HOM05D003175 ORTHO05D010757 2.2e-11 72.0 57 56.1
Cre12.g494450 Chlamydomonas reinhardtii HOM05D003175 ORTHO05D010757 1.1e-10 69.7 57 52.6
Carub.0007s0566 Capsella rubella HOM05D003175 ORTHO05D003591 1.3e-08 62.8 70 42.9
SEGI_09210 Sequoiadendron giganteum HOM05D003175 ORTHO05D003591 5.0e-08 60.8 73 39.7
AL7G16580 Arabidopsis lyrata HOM05D003175 ORTHO05D003591 8.5e-08 60.1 64 43.8
BcaNung00682 Brassica carinata HOM05D003175 ORTHO05D003591 8.5e-08 60.1 64 43.8
BcaNung04917 Brassica carinata HOM05D003175 ORTHO05D003591 8.5e-08 60.1 64 43.8
BcaNung04920 Brassica carinata HOM05D003175 ORTHO05D003591 8.5e-08 60.1 64 43.8
A01p03870 Brassica napus HOM05D003175 ORTHO05D003591 8.5e-08 60.1 64 43.8
C01p04180 Brassica napus HOM05D003175 ORTHO05D003591 8.5e-08 60.1 64 43.8
BolC1t00406H Brassica oleracea HOM05D003175 ORTHO05D003591 8.5e-08 60.1 64 43.8
BraA01t00374Z Brassica rapa HOM05D003175 ORTHO05D003591 8.5e-08 60.1 64 43.8
Potri.013G128200 Populus trichocarpa HOM05D003175 ORTHO05D003591 8.5e-08 60.1 64 48.4
Sabra13G0107100 Salix brachista HOM05D003175 ORTHO05D003591 8.5e-08 60.1 64 48.4
AT4G34620 Arabidopsis thaliana HOM05D003175 ORTHO05D003591 3.2e-07 58.2 64 42.2
Aa31LG2G15900 Aethionema arabicum HOM05D003175 ORTHO05D003591 5.5e-07 57.4 64 42.2
Nn4g25758 Nelumbo nucifera HOM05D008622 ORTHO05D010757 5.5e-07 57.4 39 74.4
BraSC58t46475Z Brassica rapa HOM05D008622 ORTHO05D010757 1.2e-06 56.2 28 85.7
Thhalv10026606m.g Eutrema salsugineum HOM05D003175 ORTHO05D003591 1.2e-06 56.2 64 40.6
Sp7g32410 Schrenkiella parvula HOM05D003175 ORTHO05D003591 1.2e-06 56.2 64 40.6
PGR102G2971 Punica granatum HOM05D003175 ORTHO05D003591 1.6e-06 55.8 65 43.1
Pp3c11_14140 Physcomitrium patens HOM05D003175 ORTHO05D003591 3.6e-06 54.7 64 42.2
TWI53G2020 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 4.7e-06 54.3 70 38.6
GSVIVG01015186001 Vitis vinifera HOM05D003175 ORTHO05D003591 4.7e-06 54.3 64 42.2
Ciclev10013100m.g Citrus clementina HOM05D003175 ORTHO05D003591 6.1e-06 53.9 64 42.2
Manes.05G131300 Manihot esculenta HOM05D003175 ORTHO05D003591 6.1e-06 53.9 64 42.2
Sed0010998 Sechium edule HOM05D003175 ORTHO05D003591 6.1e-06 53.9 64 40.6
Atru.chr8.2333 Acer truncatum HOM05D003175 ORTHO05D003591 8.0e-06 53.5 64 42.2
COL.COLO4_18186 Corchorus olitorius HOM05D003175 ORTHO05D003591 8.0e-06 53.5 64 42.2
FvH4_1g07750 Fragaria vesca HOM05D003175 ORTHO05D003591 8.0e-06 53.5 64 42.2
FAN19G2985 Fragaria x ananassa HOM05D003175 ORTHO05D003591 8.0e-06 53.5 64 42.2
Lalb_Chr07g0180911 Lupinus albus HOM05D003175 ORTHO05D003591 8.0e-06 53.5 64 37.5
MBI16_g10338_MAGBIO Magnolia biondii HOM05D003175 ORTHO05D003591 8.0e-06 53.5 64 42.2
MD02G1081900 Malus domestica HOM05D003175 ORTHO05D003591 8.0e-06 53.5 64 42.2
Manes.01G198600 Manihot esculenta HOM05D003175 ORTHO05D003591 8.0e-06 53.5 64 42.2
Nn7g37004 Nelumbo nucifera HOM05D003175 ORTHO05D003591 8.0e-06 53.5 64 43.8
PSO063G1429 Papaver somniferum HOM05D003175 ORTHO05D003591 8.0e-06 53.5 64 45.3
PSO063G6037 Papaver somniferum HOM05D003175 ORTHO05D003591 8.0e-06 53.5 64 42.2
PSO170G4980 Papaver somniferum HOM05D003175 ORTHO05D003591 8.0e-06 53.5 64 42.2
PSO384G0167 Papaver somniferum HOM05D003175 ORTHO05D003591 8.0e-06 53.5 64 42.2
Prupe.7G207200 Prunus persica HOM05D003175 ORTHO05D003591 8.0e-06 53.5 64 42.2
Sed0014824 Sechium edule HOM05D003175 ORTHO05D003591 8.0e-06 53.5 64 42.2
TWI09G0130 Tripterygium wilfordii HOM05D003175 ORTHO05D003591 8.0e-06 53.5 64 42.2


User provided reference genes

Program Settings